ISAcma9

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009925 ND Acaryochloris marina
Acaryochloris marina MBIC11017
DNA section
IS Length : 896 bp

Ends


IR Length : 16/17

IRL : GAGGCTGTTTGAGAAGTCAGGGAAGCTCTCAAGAGAGTAATCTGTCACTG
IRR : GAGGCTGTTTGAAAAGTTTAGTATTCCTGCGCCAGCCTTCGAACCATCAG

Insertion site


Left flankDirect repeatRight flankDR Length
GTGAATTATGTCGTCATAGATGAATAGCATAAGATGTGGGACAAACGCATAATTAAATTTT3

DNA sequence

GAGGCTGTTTGAGAAGTCAGGGAAGCTCTCAAGAGAGTAATCTGTCACTGTAGAATTTCTGACAGGAACTTGAGAGCAATGTCTACAGCTTACGATAGCG
ACCTAACAGCAGAGCAATGGGAATTACTCGAACCTCTGATTCCCGCTGCTAAACCAGGAGGCAGACCACGAACCACTGATATGCTCAGTGTGGTTAATGC
CATCTTTTATCTCGTTGTGACCGGCTGTCAGTGGCGACAGTTGCCTCATGATTTTCACTGCTGGTCAACGGTGTATAGCTATTTTCGAAAGTGGCGTGAT
GATGGTACTTGGAGGCAAATCAATGAACATCTACGGATGCAAGTCCGGGTGAGTGAAGACCGTCATCCGAGTCCCAGTGCAGCTATCTGTGATGCTCAAT
CGGTCAAAGTGGGCAATCCTCGGTGTCAATCCATTGGGTTTGATGGTGGCAAACTCATCAAGGGGCGTAAGCGTCATGTCCTCGTTGATACCTTGGGTCT
AATCCTGATGGTGGTCGTCACTGCTGCGAATATCTCTGACCAACGGGGGGCCAAAATTCTGTTTTGGAAAGCTCGACGCCAAGGGGCGAGCCTGGGCCGT
TTGGTTCGGATATGGGCAGATGCTGGCTATCAAGGAGAAGCCTTGATGCAGTGGGTCATGGACCGTTTTCGCTATATTTTGGAAGTCATCAAACGCTCTG
ATAATTTAGCTGGGTTCAAGGTTGTTCCCAAACGATGGATTGTAGAGCGGACGTTTGGATGGTTGTTGTGGTCTCGACGGCTCAACAAAGATTATGAAGT
GCTGACCAGAACGGCTGAAGCCCTTGTTTATGTGGCGATGATTCGACTGATGGTTCGAAGGCTGGCGCAGGAATACTAAACTTTTCAAACAGCCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
801 bp266 aa79879+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTAYDSDLTAEQWELLEPLIPAAKPGGRPRTTDMLSVVNAIFYLVVTGCQWRQLPHDFHCWSTVYSYFRKWRDDGTWRQINEHLRMQVRVSEDRHPSPS
AAICDAQSVKVGNPRCQSIGFDGGKLIKGRKRHVLVDTLGLILMVVVTAANISDQRGAKILFWKARRQGASLGRLVRIWADAGYQGEALMQWVMDRFRYI
LEVIKRSDNLAGFKVVPKRWIVERTFGWLLWSRRLNKDYEVLTRTAEALVYVAMIRLMVRRLAQEY

 

Blast result :
Comments
Only one copy found.
ISAcma9 is 95% aa similar to ISAcma5.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)