ISAcma8
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009925 | ND | Acaryochloris marina | Acaryochloris marina MBIC11017 plasmid pREB7 Acaryochloris marina MBIC11017 plasmid pREB4 Acaryochloris marina MBIC11017 plasmid pREB2 Acaryochloris marina MBIC11017 |
DNA section
IS Length : 1398 bp
Ends
IR Length : 32/35
IRL : TAACCCTCTTTTATCACTTTAGACAGATAAAAAATAGACTATTCTCAGTT
IRR : TATCCCTCTTTTATCACTTTAGACAGAGAGAAAATCAGGATGCTTGAGCA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTGCTGAAATGAATATACAGCTGGCGGCTA | AGGTCTGGGCTAAATGTTACTTCTTTTTAA | 0 | |
| CTAGTGTCCTGAATAGAATGGCGACTGCTA | AGCCAATGGATTCAGTCGATGGACGAGTCA | 0 | |
| TAAATTTTTTACCCTAGACCGTTCCCTCCA | AGACTCACAAACTTCCATCACAGACACCCG | 0 | |
| CTAGTGTCCTGAATAGAATGGCGACTGCTA | TCTTGCAAGAGATCATCCAGGTTGACTTTC | 0 | |
| TGGTGAGGAGGATTCTACCTACAGCCACCA | TGAAGGATGCGCTGTTTATGATGCCGACGG | 0 | |
| TTTAAGTCCTTCTCAATATGGCGACTGC | TA | TCCATCAAATCAGCAACAAGCTTGAGAT | 2 |
| TCTGAAACAAGATTAGGTTGTTTGCAGATT | AAGGTTCAGCCACTATGTCTTGGGCCCAGC | 0 | |
| AGAAAGTTAATCTCTTAACCGTCTAGAG | TA | CAAAACCTAACTTCTCCAACTCGGAAGT | 2 |
| CTAGCGTCCTGAATAGTATGGCGACTGC | TA | TAGAAACAAGCATGCCAAAACACATCCT | 2 |
| GTAAAGTCTGGCAACAACATGCAGTGACCT | AGACTGGTGCTGATACCAATTACCCAGCTA | 0 | |
| TAGCGGTAAAAGGATGCTCTACTTTCATC | TACTCTAGACGGTTAAGAGATTAACTTTCT | 0 | |
| ACTGACTTAAGCTCAATCAAACAGCTAGCT | TACCAAATCCGACTTACTAACCCCCGAAAC | 0 | |
| TGACTTGTCACGCTAAGTCTCCTGGGTTGT | TACTGCGTACGACTTGCGGCTTAACATTGT | 0 | |
| AGAAAGTTAATCTCTTAACCGTCTAGAGTA | ACTGCCATCCTTACTATCAGGAGATTTAGC | 0 | |
| TCAGAGTCACTTCTTGATATAGTCAAAATC | TACTCTAGACGGTTAAGAGATTAACTTTCT | 0 | |
| AGAAAGTTAATATCTTAGCCGCCTAGAGTA | CTGTGATTATTAAGATTAAGACACCAATAA | 0 | |
| ATCGGATTTTAATCAAATTGAAATTTAATT | TAAGGTGATGTTGGCGGGATTGCTGAGTGC | 0 | |
| AGAAAGTTAATATCTTAGCCGCCTAGAGTA | GCTCTAAGGTTAAGACCCCTTGATCAAATG | 0 | |
| CTTTGCCAACTATGTAGGCCAGTCCCAC | CA | AAGACCACCATTACGGGTGCCAAGATTG | 2 |
DNA sequence
TAACCCTCTTTTATCACTTTAGACAGATAAAAAATAGACTATTCTCAGTTTCTATTTTTCTAATGAGTGATGTCAGCTTCAAGAAGTCCAGAACCAACCA
TTGGCTTTGTTGATGAGTACTGCCAACTATTTGCAGAGTTATTTCCCCAAGTCCGCAGTTATGAAGCCTTCAAGCATCTCCATCTGGGGATGATTAGTGA
TATCAAACGTAAATCATTGCCCGCCATTGCAAGAGCAGTGGGCTTGGAGAACCATCAAAGCCTGCATCATTTTCTGAGTGAATCACCTTGGGTAGCGTCA
CATTTGTCTGACAAGAGATTGGACATCATCTTGAAAATACTGGATGGGCGCAGGTTAATTCTATTGATCGATGAGACGGGCGATTGCAAAAAAGGCAAGA
GTACCGACTATGTGAAACGGCAGTATATCGGCAATGTGGGCAAGAAAGAGAATGGCATCGTCGCAGTCACTGCCTACGGGCTGTTTCAAGGGATGATTTT
GCCTTTGTCCTTTGAAGTGTACAAACCCCGAGAACGTCTTAAAGAGGAGGATGAGTATCTCAGCAAACCCCAAATTGCTGCTGGAATGATCCGACAGTTG
CAAGGGATGGGCTTTTGCTTTGAGCTCGTCCTGGCTGACAGCTTGTATGGGGAAGCTCAAACAAACTTTGTGAATGTCTTAGAGGAGTTAAAGCTGCCCT
ATATCCTAGCGATTCGTAGCAATCATGCGGTGTGGTTACCCGCAGAACAAGCAGTCTTTGCCGAACCGTGGCAGTCATTTGAACGAACCTTCAGCAATGG
CACCACTGAAACTCGTTACAGGCAAGAGATCATTTATGGCCAGCGACACCACCAGAAGCGCTATTGGCTATTAACCACGGACCCCCAAACGCTACCAGAG
AACTCAACCTCTTATGTCATGGCAGCGGCACCCGAGATCAAGCTGGATGAAATTGGGGATTGCTATGGCTTCAGAACTTGGATTGAGTATGGTCTCAAAC
AGTCTAAAGATACCTTGGGTTGGGCTGATTTTCGCATGACGCACTACGAACAAATTGAAAAGTGGTGGGAGATAGTGATGAGCGCTTTCTTGATGGTGAG
TTTGTTCGCTGATGTCTTCAATGACTCTTGTCCAGTGGCACATCAACACTTTGCGCAGCATCCTTGGTGGGATAACCAAAACGGGTGGAAGAATCTGCTC
AATAATGTGCGCTTGATCATTCAACCGTTAATCAGTTGGAATCTTCTAAAGCGCTGGTTAGAAGTCTTTCCCAGCCGTGCTTTGAAAAAGGGGTTTGAGC
AACTCACATCAAAGATGGAGGCATTTTGCTGTCCACTGGTGAGGAAATTGCTCAAGCATCCTGATTTTCTCTCTGTCTAAAGTGATAAAAGAGGGATA
TTGGCTTTGTTGATGAGTACTGCCAACTATTTGCAGAGTTATTTCCCCAAGTCCGCAGTTATGAAGCCTTCAAGCATCTCCATCTGGGGATGATTAGTGA
TATCAAACGTAAATCATTGCCCGCCATTGCAAGAGCAGTGGGCTTGGAGAACCATCAAAGCCTGCATCATTTTCTGAGTGAATCACCTTGGGTAGCGTCA
CATTTGTCTGACAAGAGATTGGACATCATCTTGAAAATACTGGATGGGCGCAGGTTAATTCTATTGATCGATGAGACGGGCGATTGCAAAAAAGGCAAGA
GTACCGACTATGTGAAACGGCAGTATATCGGCAATGTGGGCAAGAAAGAGAATGGCATCGTCGCAGTCACTGCCTACGGGCTGTTTCAAGGGATGATTTT
GCCTTTGTCCTTTGAAGTGTACAAACCCCGAGAACGTCTTAAAGAGGAGGATGAGTATCTCAGCAAACCCCAAATTGCTGCTGGAATGATCCGACAGTTG
CAAGGGATGGGCTTTTGCTTTGAGCTCGTCCTGGCTGACAGCTTGTATGGGGAAGCTCAAACAAACTTTGTGAATGTCTTAGAGGAGTTAAAGCTGCCCT
ATATCCTAGCGATTCGTAGCAATCATGCGGTGTGGTTACCCGCAGAACAAGCAGTCTTTGCCGAACCGTGGCAGTCATTTGAACGAACCTTCAGCAATGG
CACCACTGAAACTCGTTACAGGCAAGAGATCATTTATGGCCAGCGACACCACCAGAAGCGCTATTGGCTATTAACCACGGACCCCCAAACGCTACCAGAG
AACTCAACCTCTTATGTCATGGCAGCGGCACCCGAGATCAAGCTGGATGAAATTGGGGATTGCTATGGCTTCAGAACTTGGATTGAGTATGGTCTCAAAC
AGTCTAAAGATACCTTGGGTTGGGCTGATTTTCGCATGACGCACTACGAACAAATTGAAAAGTGGTGGGAGATAGTGATGAGCGCTTTCTTGATGGTGAG
TTTGTTCGCTGATGTCTTCAATGACTCTTGTCCAGTGGCACATCAACACTTTGCGCAGCATCCTTGGTGGGATAACCAAAACGGGTGGAAGAATCTGCTC
AATAATGTGCGCTTGATCATTCAACCGTTAATCAGTTGGAATCTTCTAAAGCGCTGGTTAGAAGTCTTTCCCAGCCGTGCTTTGAAAAAGGGGTTTGAGC
AACTCACATCAAAGATGGAGGCATTTTGCTGTCCACTGGTGAGGAAATTGCTCAAGCATCCTGATTTTCTCTCTGTCTAAAGTGATAAAAGAGGGATA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1311 bp | 436 aa | 70 | 1380 | + | No |
Chemistry : DDE
ORF sequence :
MSASRSPEPTIGFVDEYCQLFAELFPQVRSYEAFKHLHLGMISDIKRKSLPAIARAVGLENHQSLHHFLSESPWVASHLSDKRLDIILKILDGRRLILLI
DETGDCKKGKSTDYVKRQYIGNVGKKENGIVAVTAYGLFQGMILPLSFEVYKPRERLKEEDEYLSKPQIAAGMIRQLQGMGFCFELVLADSLYGEAQTNF
VNVLEELKLPYILAIRSNHAVWLPAEQAVFAEPWQSFERTFSNGTTETRYRQEIIYGQRHHQKRYWLLTTDPQTLPENSTSYVMAAAPEIKLDEIGDCYG
FRTWIEYGLKQSKDTLGWADFRMTHYEQIEKWWEIVMSAFLMVSLFADVFNDSCPVAHQHFAQHPWWDNQNGWKNLLNNVRLIIQPLISWNLLKRWLEVF
PSRALKKGFEQLTSKMEAFCCPLVRKLLKHPDFLSV
DETGDCKKGKSTDYVKRQYIGNVGKKENGIVAVTAYGLFQGMILPLSFEVYKPRERLKEEDEYLSKPQIAAGMIRQLQGMGFCFELVLADSLYGEAQTNF
VNVLEELKLPYILAIRSNHAVWLPAEQAVFAEPWQSFERTFSNGTTETRYRQEIIYGQRHHQKRYWLLTTDPQTLPENSTSYVMAAAPEIKLDEIGDCYG
FRTWIEYGLKQSKDTLGWADFRMTHYEQIEKWWEIVMSAFLMVSLFADVFNDSCPVAHQHFAQHPWWDNQNGWKNLLNNVRLIIQPLISWNLLKRWLEVF
PSRALKKGFEQLTSKMEAFCCPLVRKLLKHPDFLSV
Blast result :
Comments
ISAcma8 is 71% aa similar to ISNpu5.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)
2] ISfinder annotation (2009)