ISAcma6

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009925 ND Acaryochloris marina
Acaryochloris marina MBIC11017 plasmid pREB5
Acaryochloris marina MBIC11017
DNA section
IS Length : 1059 bp

Ends


IR Length : 18/20

IRL : GGCGTTGTTGCATGAATAGGTGCTGCGGATTAGGCGCGGGCTAGAGTTTA
IRR : GGCTTTGTTGCATGAATCGCGTAAAGGCTAGATGAATTGCCTCTCCTCGT

Insertion site


Left flankDirect repeatRight flankDR Length
CAAGATTCAAGCCTCTTTTCAGGTCAGTAATATAGAGTTCGCCCTGTCCGG9
TAGACTGGTTGGAGCTTTCGGCAATTAAACCACCAAACTCATCACGGGTTA9
ATGACACCTGGATGATTTGCGATGGCGAACTGCAACGCTTGCAGGCTTGTG9
GGCCCCTATCGAACCTTTGAAATCTTTGAGCCTAAATTGCGGTTGATATCG9
ATCACAACTCCATCACCCAGGGTTTTGATCGACTATTTTTTTACCGCCTTA9
GGAGGGTTGTGCTGTCTTTCGCTGGTCATTTCCAAAGCCGAAAGTTGGACT9
TGGTATCTCGATAAGGTTTCACCGATAAACCATCAACTTCCGTCAAAGTCC9
TGGAGTTTGTGAATGGTTGTAATTCCACATTGCTGAAGTTGGCTGAGATGG9
GAGTATTCTCTAAATATTTCGAGGAGTAACTACAAAGCTAAATTGGAGAGC9
GCAATTCCTGTTAACTCCACTATTCCAAACCCATAAAGGTGCCAGGTGATA9

DNA sequence

GGCGTTGTTGCATGAATAGGTGCTGCGGATTAGGCGCGGGCTAGAGTTTATGTACCACCAAAAACCGCTAGCCCATGAGTTACCAAATCCGCAACTGGTC
CGAGTATAACGCTGGTCTCAAACAGCGGGGAAGTGTGACCTTCTGGCTCGAACAATCAGCTATCGTTCATTGGCTAGAAACCACACCGAGACAAAAGCGG
GGAGCCTCTCTGACCTATAGCGATACAGCAATCTCCACCTTCGAGACCGTCAAATGTATCTATGGTTTAGCAGGGCGTCAAACCGAAGGATTTCTAAATT
CATTGTTTGAGTTGATGGGAATTGAGCTTCCCGTTTGTGACCACAGCACCGTCTCTCGGCGGAAAGGTCAGCTATCGATTTCATTGCCCGTTATACCTAA
GCAAGGTGCCATTCACGTCGTTATCGATAGCACAGGGATCAAAGTCTATGGTGAAGGAGAGTGGAAAACCAGGCAACATGGTGTGAGCAAACGTCGGACG
TGGCGTAAACTTCACTTGAGTGTTGATGAGTCCACTGGAGAAATTCTCACGGGTGTCGTGACAACCAATGACGTTCAGGATGGTGAAGTGTTTGAAGATC
TCCTTGAAGGCATCGACGATGAGATTGAACAGGTCTCTGCTGACGGAGCCTATGACCAAAGTCATTGCTATGATGCCCTCATGGAGCGCAATGCCACAGC
TGCAATTCCCCCAAGGAAGAATGCCAAAATTTGGCAACATGGAAACTGCAATGCTCCACCCCATCCACGAGATCAAAATCTCAGAGCCATCCGAAAACAG
GGACGAAAGAGGTGGAAAAAACAAGCCCACTATCATCGGCGGTCTCTAGCTGAAACGACGATGTTTCGCTTCAAAACTATCTTTGGGGGTCAGGTACGTT
CCCGTAACTTTGATAATCAAGCCACAGAGTTACTCCTGCAGTGTGCGGCACTCAATCGAATGATTCAGATCGCCAAACCCGAGACTGTTTGGGTTGAAGC
TTAAGAATAACGAGGAGAGGCAATTCATCTAGCCTTTACGCGATTCATGCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
930 bp309 aa751004+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYQIRNWSEYNAGLKQRGSVTFWLEQSAIVHWLETTPRQKRGASLTYSDTAISTFETVKCIYGLAGRQTEGFLNSLFELMGIELPVCDHSTVSRRKGQL
SISLPVIPKQGAIHVVIDSTGIKVYGEGEWKTRQHGVSKRRTWRKLHLSVDESTGEILTGVVTTNDVQDGEVFEDLLEGIDDEIEQVSADGAYDQSHCYD
ALMERNATAAIPPRKNAKIWQHGNCNAPPHPRDQNLRAIRKQGRKRWKKQAHYHRRSLAETTMFRFKTIFGGQVRSRNFDNQATELLLQCAALNRMIQIA
KPETVWVEA

 

Blast result :
Comments
ISAcma6 is 62% aa similar to ISAs4.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C.,Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S.,Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and
Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.
2] ISfinder annotation (2009)