ISPst10

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Pseudomonas stutzeri
Pseudomonas stutzeri
DNA section
IS Length : 1113 bp

Ends


IR Length : 22/27

IRL : GGCGGCGGCAAAAACTGAGTGCAACACCTGACCATTCCGGTACGGTGCTG
IRR : GGCGGTTGCAGGAGCTGAGTGCAACACGGTTATTGAATTGAAGTCGGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
TATTGAAAAACATAATCATTACC3

DNA sequence

GGCGGCGGCAAAAACTGAGTGCAACACCTGACCATTCCGGTACGGTGCTGCCCCTATGTCTTATACCGAACTCAGCGTTGAAGAACGCGCCACCATTCAA
ATCGGCAATGCCCAAGGCTTCAGCCTGCGCAGGATTGCCCGCTTGATTAACCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGTAATCGAGATGCCT
TCGGCGGCTACTCGGCCCGCGTCGCTCAACAACAGATGCAGGCCCGCCGTCAGGTGTGCCGACCGATACGAAAGCTGTTGCCGGGTAGCGAGCGCTTCGA
GTTGGTGGCCCATATGCTGCGTGAGCGTTTGTCCCCCGAGCAAATTGCCGGCAAGCTGCGCAGCATGAACATGCCCAATCTCAGAGATGCCTACGTCTGT
CGCGAGACGATCTATAACGCGATCTATGCCCTGCCGGTCGGCGAACTGCGCAAGGAGCTGATCATCTGCCTGCGCCAAAGCAAGACGACACGTAGACCGC
GCTCTGGCGGCGTGGATCGGCGAGGGCAGATCCCCGAGATGGTCAGCATTCATGTACGCCCGCCAGAGATCGAAGACCGGCTGATGCCGGGGCATTGGGA
AGGCGATCTGATCAAGGGGAAGGCCAACGCCTCGTCTGTAGGGACGTTGGTGGAGCGCACCAGTGGTTATCTGATGCTGGTGAAGATGAATGATGCGACG
GCGACCTCGGCGATGGAGGGCTTCAGTGCAGCGCTCAATAGAATGCCACTGGCAATGCGCAAGAGCATGACCTACGACCAGGGTCGGGAGATGGCGCGGC
ACGCCGAGATCACCCAGCAAACCGGCATAGCGATCTACTTCTGCGACCCTCACAGCCCTTGGCAACGCGGTAGCAACGAGAACATCAATGGCCTGATCCG
CCAGTACCTGCCCAAAGGCACAGACCTGTCGGTACATAGCCAGGAAGATCTGGATGCCATAGCGTTGCAACTGAATATGCGTCCGCGTAAACGCTTCGAC
TTCAAATGCCCAATCGAAGTTATGGGTAAGGTGATGCAGGAAGCCATGGCTATGCGGCATGATGCTCCGACTTCAATTCAATAACCGTGTTGCACTCAGC
TCCTGCAACCGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa561084+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSYTELSVEERATIQIGNAQGFSLRRIARLINRSPSTISRELRRNRDAFGGYSARVAQQQMQARRQVCRPIRKLLPGSERFELVAHMLRERLSPEQIAGK
LRSMNMPNLRDAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNRMPLAMRKSMTYDQGREMARHAEITQQTGIAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEDLD
AIALQLNMRPRKRFDFKCPIEVMGKVMQEAMAMRHDAPTSIQ

 

Blast result :
Comments
ISPst10 is 96% aa similar to ISUnCu4.
References
1] Laurent Poirel (2008) Diret submission.