ISPst10
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Pseudomonas stutzeri | Pseudomonas stutzeri |
DNA section
IS Length : 1113 bp
Ends
IR Length : 22/27
IRL : GGCGGCGGCAAAAACTGAGTGCAACACCTGACCATTCCGGTACGGTGCTG
IRR : GGCGGTTGCAGGAGCTGAGTGCAACACGGTTATTGAATTGAAGTCGGAGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTGAAAAA | CAT | AATCATTACC | 3 |
DNA sequence
GGCGGCGGCAAAAACTGAGTGCAACACCTGACCATTCCGGTACGGTGCTGCCCCTATGTCTTATACCGAACTCAGCGTTGAAGAACGCGCCACCATTCAA
ATCGGCAATGCCCAAGGCTTCAGCCTGCGCAGGATTGCCCGCTTGATTAACCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGTAATCGAGATGCCT
TCGGCGGCTACTCGGCCCGCGTCGCTCAACAACAGATGCAGGCCCGCCGTCAGGTGTGCCGACCGATACGAAAGCTGTTGCCGGGTAGCGAGCGCTTCGA
GTTGGTGGCCCATATGCTGCGTGAGCGTTTGTCCCCCGAGCAAATTGCCGGCAAGCTGCGCAGCATGAACATGCCCAATCTCAGAGATGCCTACGTCTGT
CGCGAGACGATCTATAACGCGATCTATGCCCTGCCGGTCGGCGAACTGCGCAAGGAGCTGATCATCTGCCTGCGCCAAAGCAAGACGACACGTAGACCGC
GCTCTGGCGGCGTGGATCGGCGAGGGCAGATCCCCGAGATGGTCAGCATTCATGTACGCCCGCCAGAGATCGAAGACCGGCTGATGCCGGGGCATTGGGA
AGGCGATCTGATCAAGGGGAAGGCCAACGCCTCGTCTGTAGGGACGTTGGTGGAGCGCACCAGTGGTTATCTGATGCTGGTGAAGATGAATGATGCGACG
GCGACCTCGGCGATGGAGGGCTTCAGTGCAGCGCTCAATAGAATGCCACTGGCAATGCGCAAGAGCATGACCTACGACCAGGGTCGGGAGATGGCGCGGC
ACGCCGAGATCACCCAGCAAACCGGCATAGCGATCTACTTCTGCGACCCTCACAGCCCTTGGCAACGCGGTAGCAACGAGAACATCAATGGCCTGATCCG
CCAGTACCTGCCCAAAGGCACAGACCTGTCGGTACATAGCCAGGAAGATCTGGATGCCATAGCGTTGCAACTGAATATGCGTCCGCGTAAACGCTTCGAC
TTCAAATGCCCAATCGAAGTTATGGGTAAGGTGATGCAGGAAGCCATGGCTATGCGGCATGATGCTCCGACTTCAATTCAATAACCGTGTTGCACTCAGC
TCCTGCAACCGCC
ATCGGCAATGCCCAAGGCTTCAGCCTGCGCAGGATTGCCCGCTTGATTAACCGATCCCCTTCGACCATCAGCCGGGAGCTGCGCCGTAATCGAGATGCCT
TCGGCGGCTACTCGGCCCGCGTCGCTCAACAACAGATGCAGGCCCGCCGTCAGGTGTGCCGACCGATACGAAAGCTGTTGCCGGGTAGCGAGCGCTTCGA
GTTGGTGGCCCATATGCTGCGTGAGCGTTTGTCCCCCGAGCAAATTGCCGGCAAGCTGCGCAGCATGAACATGCCCAATCTCAGAGATGCCTACGTCTGT
CGCGAGACGATCTATAACGCGATCTATGCCCTGCCGGTCGGCGAACTGCGCAAGGAGCTGATCATCTGCCTGCGCCAAAGCAAGACGACACGTAGACCGC
GCTCTGGCGGCGTGGATCGGCGAGGGCAGATCCCCGAGATGGTCAGCATTCATGTACGCCCGCCAGAGATCGAAGACCGGCTGATGCCGGGGCATTGGGA
AGGCGATCTGATCAAGGGGAAGGCCAACGCCTCGTCTGTAGGGACGTTGGTGGAGCGCACCAGTGGTTATCTGATGCTGGTGAAGATGAATGATGCGACG
GCGACCTCGGCGATGGAGGGCTTCAGTGCAGCGCTCAATAGAATGCCACTGGCAATGCGCAAGAGCATGACCTACGACCAGGGTCGGGAGATGGCGCGGC
ACGCCGAGATCACCCAGCAAACCGGCATAGCGATCTACTTCTGCGACCCTCACAGCCCTTGGCAACGCGGTAGCAACGAGAACATCAATGGCCTGATCCG
CCAGTACCTGCCCAAAGGCACAGACCTGTCGGTACATAGCCAGGAAGATCTGGATGCCATAGCGTTGCAACTGAATATGCGTCCGCGTAAACGCTTCGAC
TTCAAATGCCCAATCGAAGTTATGGGTAAGGTGATGCAGGAAGCCATGGCTATGCGGCATGATGCTCCGACTTCAATTCAATAACCGTGTTGCACTCAGC
TCCTGCAACCGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 56 | 1084 | + | No |
Chemistry : DDE
ORF sequence :
MSYTELSVEERATIQIGNAQGFSLRRIARLINRSPSTISRELRRNRDAFGGYSARVAQQQMQARRQVCRPIRKLLPGSERFELVAHMLRERLSPEQIAGK
LRSMNMPNLRDAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNRMPLAMRKSMTYDQGREMARHAEITQQTGIAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEDLD
AIALQLNMRPRKRFDFKCPIEVMGKVMQEAMAMRHDAPTSIQ
LRSMNMPNLRDAYVCRETIYNAIYALPVGELRKELIICLRQSKTTRRPRSGGVDRRGQIPEMVSIHVRPPEIEDRLMPGHWEGDLIKGKANASSVGTLVE
RTSGYLMLVKMNDATATSAMEGFSAALNRMPLAMRKSMTYDQGREMARHAEITQQTGIAIYFCDPHSPWQRGSNENINGLIRQYLPKGTDLSVHSQEDLD
AIALQLNMRPRKRFDFKCPIEVMGKVMQEAMAMRHDAPTSIQ
Blast result :
Comments
ISPst10 is 96% aa similar to ISUnCu4.
References
1] Laurent Poirel (2008) Diret submission.