ISAisp4
- Family IS110
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008782 | ND | Acidovorax sp. | Acidovorax sp. JS42 |
DNA section
IS Length : 1614 bp
Ends
Left end : CTAACTGTCATGACCCTTGCGGTTCACCCTGGATGATGGAAGACACTGGGGGCGTGCGGGCCAGCGCGGGTAGAGGTCGGTCAATTCTTTGATGGCACTC
Right end : GCCCGCTGCCGCCTGAGACGCGCTTGCCCGCTGACCATCGGCCTTGGCCAGCCTCAGGTCAGGTGTCGGCACGTCCGGTGGCGGGTGTCTTCCACATTAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CATTGCACCG | GCGATACAAA | 0 | |
| CTCCAGCGCG | TGATGCTGGC | 0 | |
| GAGAACAGTC | CTCCATGGCC | 0 | |
| GCTGATCTGG | AGGCTCTGTT | 0 | |
| CAGCATTGGC | CCCGTCGGTC | 0 | |
| GCCTTCGGGT | CAATTCGTCG | 0 | |
| TAACCAACGT | TGCTCGCGGT | 0 | |
| ACTGCTGCCA | CCAACGTCTA | 0 | |
| CGGCGCTCCA | CGAATGAAAT | 0 | |
| GTTTGAGCAT | CCGGCTACAG | 0 | |
| GGGTAGCGCC | CAATCAGGCG | 0 | |
| CAATCAGGCG | CGGCTTTTAG | 0 | |
| TGCTGGCCAA | AGCCTCTCTT | 0 |
DNA sequence
CTAACTGTCATGACCCTTGCGGTTCACCCTGGATGATGGAAGACACTGGGGGCGTGCGGGCCAGCGCGGGTAGAGGTCGGTCAATTCTTTGATGGCACTC
GACCGCGATCGCTAACTTGACCCGCTGCCGACCACTCGTACCCAGGATTGCCTGCGGGCGTTGCCCAGACCCAGCCGGGTCAGAGCGCGCCTGACAGCCC
ACATTAAAGAGAGCCGCCGGGCTTGCCCGGCAGGCCGTTGGTCGGCGGCACCTTGGCTGGTCCGCACGCTTGTGATTGTCATTCAAGCTGCAGGAGAGCC
GCAATGGATTTGACCCCGATGCACAAGCGCGTCATTGCGCTGGACGTTCACCAGGCCAAGATCACGGCCTGCGCCGTTGTCGAACATGACGATGGCCGGG
TAGAGGTCACCAAGCGAGACTTCGGCGCCTTCAAACGCGACCGCCGCGCCTTGGCGCAGTGGGCGCTGGAGATGGCCCCTGAGGTCGTGGTGATGGAGAG
CACAGGGGTGTATTGGAAAAGCCCGTTTGCGGCGCTGGAGGCGGTGGGCCTTATTGCTTGGGTGGTCAACGCGCGGCATGTCAAGGCTGTGCCCGGTCGC
AAGACCGACATGGCCGATGCACAGTGGCTGGCCACGCTGGCGCGTGCGGGTTTGCTGCGCGCCTCGTTCATTCCACCGGTGCAGATGCGCCAGCTTCGCC
TGGTAGCGCGCCAGCGGCAAAAGCTGGTGGGCATGTGCAGCGCCGAGAAGAACCGGCTGCACAAGGTGCTGGTGGACGCGGGCATTCGCATCAACGTGCT
GGTGGCCGACATCCACGGACAGAGCGCGCGTGCCATGGTCAAAGCCCTGATCGAGGGACAGCCCATGCACGAGGTGCTGAACCACAAGGGGCGGCTGCGA
GCGAGCAGGCAAGAACTGTGCGAGGCCCTGAGCACCGAGCAGTTCAGCGCAGTGCACCGCTTTGTGGCCCAGGAGATCGTGCAGCACATTGAGCAGATCG
AGCAGCGCATCGCCCGCATGGACCAGTACCTGCTGCAGGGCCTGCAACCCTGGCAGCCACAGCTCAGGCTGCTGCAGACCCTGCCGGGCATCGACGAGCA
GGGGGCGGCCATGCTGCTGGTGGAGATTGGTGCGGACATGAGCGTGTTTGGCAGTGCAGAGCGCCTGGCCAGTTGGGTGGGCATCTGCCCAGGCAACAAC
GAGAGCGCGGGCAAGCGCAAAACCGGGCGCATCCGCAAGGGCAACGCCTGGGTCAGAAGGCTGCTGTGCGAGTTCGCCCAGGCTGCAGCACGAACGCGCT
GCGCACTCAAGGCCAAGTTCGACGCGCTGACCATCCGAAAGGGCCACAAGAAGTCAGTGGTGGCGCTGGCCCACAAGATGCTGCGCACCATCTACGCCAT
GCTCAGCAACGCAAGCCACTACCAGGACAAGGAGGTCGATTACGAGGCGCTGAACGTTCAGCGCAACGCGCCGCGCTGGATCAAAATGCTGCGCAAGCAC
GGCTTCATCGCCACGCCCGCTGCCGCCTGAGACGCGCTTGCCCGCTGACCATCGGCCTTGGCCAGCCTCAGGTCAGGTGTCGGCACGTCCGGTGGCGGGT
GTCTTCCACATTAA
GACCGCGATCGCTAACTTGACCCGCTGCCGACCACTCGTACCCAGGATTGCCTGCGGGCGTTGCCCAGACCCAGCCGGGTCAGAGCGCGCCTGACAGCCC
ACATTAAAGAGAGCCGCCGGGCTTGCCCGGCAGGCCGTTGGTCGGCGGCACCTTGGCTGGTCCGCACGCTTGTGATTGTCATTCAAGCTGCAGGAGAGCC
GCAATGGATTTGACCCCGATGCACAAGCGCGTCATTGCGCTGGACGTTCACCAGGCCAAGATCACGGCCTGCGCCGTTGTCGAACATGACGATGGCCGGG
TAGAGGTCACCAAGCGAGACTTCGGCGCCTTCAAACGCGACCGCCGCGCCTTGGCGCAGTGGGCGCTGGAGATGGCCCCTGAGGTCGTGGTGATGGAGAG
CACAGGGGTGTATTGGAAAAGCCCGTTTGCGGCGCTGGAGGCGGTGGGCCTTATTGCTTGGGTGGTCAACGCGCGGCATGTCAAGGCTGTGCCCGGTCGC
AAGACCGACATGGCCGATGCACAGTGGCTGGCCACGCTGGCGCGTGCGGGTTTGCTGCGCGCCTCGTTCATTCCACCGGTGCAGATGCGCCAGCTTCGCC
TGGTAGCGCGCCAGCGGCAAAAGCTGGTGGGCATGTGCAGCGCCGAGAAGAACCGGCTGCACAAGGTGCTGGTGGACGCGGGCATTCGCATCAACGTGCT
GGTGGCCGACATCCACGGACAGAGCGCGCGTGCCATGGTCAAAGCCCTGATCGAGGGACAGCCCATGCACGAGGTGCTGAACCACAAGGGGCGGCTGCGA
GCGAGCAGGCAAGAACTGTGCGAGGCCCTGAGCACCGAGCAGTTCAGCGCAGTGCACCGCTTTGTGGCCCAGGAGATCGTGCAGCACATTGAGCAGATCG
AGCAGCGCATCGCCCGCATGGACCAGTACCTGCTGCAGGGCCTGCAACCCTGGCAGCCACAGCTCAGGCTGCTGCAGACCCTGCCGGGCATCGACGAGCA
GGGGGCGGCCATGCTGCTGGTGGAGATTGGTGCGGACATGAGCGTGTTTGGCAGTGCAGAGCGCCTGGCCAGTTGGGTGGGCATCTGCCCAGGCAACAAC
GAGAGCGCGGGCAAGCGCAAAACCGGGCGCATCCGCAAGGGCAACGCCTGGGTCAGAAGGCTGCTGTGCGAGTTCGCCCAGGCTGCAGCACGAACGCGCT
GCGCACTCAAGGCCAAGTTCGACGCGCTGACCATCCGAAAGGGCCACAAGAAGTCAGTGGTGGCGCTGGCCCACAAGATGCTGCGCACCATCTACGCCAT
GCTCAGCAACGCAAGCCACTACCAGGACAAGGAGGTCGATTACGAGGCGCTGAACGTTCAGCGCAACGCGCCGCGCTGGATCAAAATGCTGCGCAAGCAC
GGCTTCATCGCCACGCCCGCTGCCGCCTGAGACGCGCTTGCCCGCTGACCATCGGCCTTGGCCAGCCTCAGGTCAGGTGTCGGCACGTCCGGTGGCGGGT
GTCTTCCACATTAA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1227 bp | 408 aa | 304 | 1530 | + | No |
Chemistry : DEDD
ORF sequence :
MDLTPMHKRVIALDVHQAKITACAVVEHDDGRVEVTKRDFGAFKRDRRALAQWALEMAPEVVVMESTGVYWKSPFAALEAVGLIAWVVNARHVKAVPGRK
TDMADAQWLATLARAGLLRASFIPPVQMRQLRLVARQRQKLVGMCSAEKNRLHKVLVDAGIRINVLVADIHGQSARAMVKALIEGQPMHEVLNHKGRLRA
SRQELCEALSTEQFSAVHRFVAQEIVQHIEQIEQRIARMDQYLLQGLQPWQPQLRLLQTLPGIDEQGAAMLLVEIGADMSVFGSAERLASWVGICPGNNE
SAGKRKTGRIRKGNAWVRRLLCEFAQAAARTRCALKAKFDALTIRKGHKKSVVALAHKMLRTIYAMLSNASHYQDKEVDYEALNVQRNAPRWIKMLRKHG
FIATPAAA
TDMADAQWLATLARAGLLRASFIPPVQMRQLRLVARQRQKLVGMCSAEKNRLHKVLVDAGIRINVLVADIHGQSARAMVKALIEGQPMHEVLNHKGRLRA
SRQELCEALSTEQFSAVHRFVAQEIVQHIEQIEQRIARMDQYLLQGLQPWQPQLRLLQTLPGIDEQGAAMLLVEIGADMSVFGSAERLASWVGICPGNNE
SAGKRKTGRIRKGNAWVRRLLCEFAQAAARTRCALKAKFDALTIRKGHKKSVVALAHKMLRTIYAMLSNASHYQDKEVDYEALNVQRNAPRWIKMLRKHG
FIATPAAA
Blast result :
Comments
ISAisp4 is 80% aa similar to ISAfe3.
There is 13 copies of ISAisp4 into Acidovorax sp. JS42 genome.
There is 13 copies of ISAisp4 into Acidovorax sp. JS42 genome.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chertkov,O., Brettin,T., Bruce,D., Han,C., Tapia,R., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Stahl,D. and Richardson,P. (2006) Direct Submission GenBank.
2]ISfinder annotation (2008).
2]ISfinder annotation (2008).