ISSpe2
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009901 | ND | Shewanella pealeana | Shewanella pealeana ATCC 700345 |
DNA section
IS Length : 1383 bp
Ends
IR Length : 15/17
IRL : taatggaATGGACCCATCCACTTTTAATCGGCCTCGCAATGGGCCACGAT
IRR : ----ataATGGACCCATCCGGTTTGCAAGATATTTAATATCGACTTTGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCGCCATGGA | TGGGGAAGTG | 0 | |
| AGACCAAGGA | TGGTCGAAGG | 0 | |
| GAGCCATGGA | TGGCGATTCT | 0 | |
| CCGCCATGGA | TGGGGAAGTG | 0 | |
| GAGTCATGGA | TGGCGAATAT | 0 | |
| GAGTCATGGA | TGGCGATTCT | 0 | |
| TCGCCATGGA | TGGCATGAAG | 0 | |
| ACCACATGGA | TGGTGAATGC | 0 |
DNA sequence
taatggaATGGACCCATCCACTTTTAATCGGCCTCGCAATGGGCCACGATGTAGTTGCTTAAACTCATCAGAAAGAGGACGGGTCCACTATGAACATTAC
TACAATTGGTCTTGATATCGCAAAGTCCGTTTTTCATTTTGTTGGCGTTAATAAAGCCGGAAAGCTTGTCAAAAAGAAGATAATTAAGCGCAAAGAGTTA
GTGCTTTTTCTTGCTCAAATAGAACCTTGCCTTGTTGTGATGGAAGCCTGTGGCGGTGCAAACTATTGGGCTAGGGAGTTCGAGAAAGTTGGCCATCAAG
TTAAGTTAATAGCACCCCAGTATGTCGTTCCCTACAGACAAGGAAATAAGAATGACTATAACGATGCACTTGCGATAGCTGAAGCAGCACAACGCCCCAA
CATGCGCTTTGTAGAGCCTAAGCCAGTAGAGCAGCAAGATATTCAGATGCTGCATCGAATGAGAGAAAGACTAAACAAACAATCTACTGCACTGATAAAT
CAAGTGAGAGGTATGCTCGCTGAGTACGGCATTGTCATCACAAAAGGAAAAGCGTCTTTTAGGACAAAGCTACCAGATATTCTAGAAAATGCCGATAACG
AATTAACAGTCAAAGGCCGAAGTGTTTTTTATCAACTATATGAAGAGTTTAATGACATTGAGAAGCGACTTAAAAACTGTGATGCCCAAGTTCAACAAGA
GGTGAAAAGTAACCAAGTATGCCAGCGCTTAGAAAGCGTACCAGGCATTGGCCCTGTGACTGCCACAGCATTTTATGCAGCTGTTGGGCAAGGTAAAGAT
TTTACCAATGGGAGACATTTTTCAGCATGGTGCGGTCTAGTACCCAAACAGCATAGTAGTGGCGGGAAAAATAATTTGCTTGGTATTAGTAAGCGAGGAA
ACGCTTATTTGAGAACGCTATTTATCCACGGGGCAAGAACTGTCTTACAGCATAGTTCTAATAAAACTGACAGATTTAGTTGCTGGGCTAGCGCACTTGC
AGAAAGGCGTGGCTTTAACAGAGCTTGTGTTGCCGTAGCTAATAAGCTTGCACGAATAGCGTGGGTTATAGCAGCAAGAGAAGATGAATACCGTATCACA
GTATAAATTAATCATTAACGCGTCAACTTAACGAGATAATCATAAGTTTTGCTAACCACCAAGTTGCCAAGATAATTGATTTGATGATGAGACAGTCAGA
CTGTTCTGCTTAAAACCTTGCTTCGCCACAGGCTCTAAAGAAGCCGTAAGGATGATAAGGAAAGTAGAAGCAAATATCCATCAGGGCCAGAGGAGTACCT
CAATAACAGGCCGAATATATGGGTGCAATGAACTCTTCTCAAAGTCGATATTAAATATCTTGCAAACCGGATGGGTCCATata
TACAATTGGTCTTGATATCGCAAAGTCCGTTTTTCATTTTGTTGGCGTTAATAAAGCCGGAAAGCTTGTCAAAAAGAAGATAATTAAGCGCAAAGAGTTA
GTGCTTTTTCTTGCTCAAATAGAACCTTGCCTTGTTGTGATGGAAGCCTGTGGCGGTGCAAACTATTGGGCTAGGGAGTTCGAGAAAGTTGGCCATCAAG
TTAAGTTAATAGCACCCCAGTATGTCGTTCCCTACAGACAAGGAAATAAGAATGACTATAACGATGCACTTGCGATAGCTGAAGCAGCACAACGCCCCAA
CATGCGCTTTGTAGAGCCTAAGCCAGTAGAGCAGCAAGATATTCAGATGCTGCATCGAATGAGAGAAAGACTAAACAAACAATCTACTGCACTGATAAAT
CAAGTGAGAGGTATGCTCGCTGAGTACGGCATTGTCATCACAAAAGGAAAAGCGTCTTTTAGGACAAAGCTACCAGATATTCTAGAAAATGCCGATAACG
AATTAACAGTCAAAGGCCGAAGTGTTTTTTATCAACTATATGAAGAGTTTAATGACATTGAGAAGCGACTTAAAAACTGTGATGCCCAAGTTCAACAAGA
GGTGAAAAGTAACCAAGTATGCCAGCGCTTAGAAAGCGTACCAGGCATTGGCCCTGTGACTGCCACAGCATTTTATGCAGCTGTTGGGCAAGGTAAAGAT
TTTACCAATGGGAGACATTTTTCAGCATGGTGCGGTCTAGTACCCAAACAGCATAGTAGTGGCGGGAAAAATAATTTGCTTGGTATTAGTAAGCGAGGAA
ACGCTTATTTGAGAACGCTATTTATCCACGGGGCAAGAACTGTCTTACAGCATAGTTCTAATAAAACTGACAGATTTAGTTGCTGGGCTAGCGCACTTGC
AGAAAGGCGTGGCTTTAACAGAGCTTGTGTTGCCGTAGCTAATAAGCTTGCACGAATAGCGTGGGTTATAGCAGCAAGAGAAGATGAATACCGTATCACA
GTATAAATTAATCATTAACGCGTCAACTTAACGAGATAATCATAAGTTTTGCTAACCACCAAGTTGCCAAGATAATTGATTTGATGATGAGACAGTCAGA
CTGTTCTGCTTAAAACCTTGCTTCGCCACAGGCTCTAAAGAAGCCGTAAGGATGATAAGGAAAGTAGAAGCAAATATCCATCAGGGCCAGAGGAGTACCT
CAATAACAGGCCGAATATATGGGTGCAATGAACTCTTCTCAAAGTCGATATTAAATATCTTGCAAACCGGATGGGTCCATata
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1017 bp | 338 aa | 90 | 1106 | + | No |
Chemistry : DEDD
ORF sequence :
MNITTIGLDIAKSVFHFVGVNKAGKLVKKKIIKRKELVLFLAQIEPCLVVMEACGGANYWAREFEKVGHQVKLIAPQYVVPYRQGNKNDYNDALAIAEAA
QRPNMRFVEPKPVEQQDIQMLHRMRERLNKQSTALINQVRGMLAEYGIVITKGKASFRTKLPDILENADNELTVKGRSVFYQLYEEFNDIEKRLKNCDAQ
VQQEVKSNQVCQRLESVPGIGPVTATAFYAAVGQGKDFTNGRHFSAWCGLVPKQHSSGGKNNLLGISKRGNAYLRTLFIHGARTVLQHSSNKTDRFSCWA
SALAERRGFNRACVAVANKLARIAWVIAAREDEYRITV
QRPNMRFVEPKPVEQQDIQMLHRMRERLNKQSTALINQVRGMLAEYGIVITKGKASFRTKLPDILENADNELTVKGRSVFYQLYEEFNDIEKRLKNCDAQ
VQQEVKSNQVCQRLESVPGIGPVTATAFYAAVGQGKDFTNGRHFSAWCGLVPKQHSSGGKNNLLGISKRGNAYLRTLFIHGARTVLQHSSNKTDRFSCWA
SALAERRGFNRACVAVANKLARIAWVIAAREDEYRITV
Blast result :
Comments
There are 8 copies of ISSpe2 encoded in the Shewanella pealeana genome.
The transposase encoded by ISSpe2 has 90% identity to ISSde4.
The inverted repeats are not at the termini of the IS but start at position 8 on the left end and at position 4 on the right end.
The transposase encoded by ISSpe2 has 90% identity to ISSde4.
The inverted repeats are not at the termini of the IS but start at position 8 on the left end and at position 4 on the right end.
References
1] Romine, M. F. (2008) Direct submission.