ISOt4

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Orientia tsutsugamushi
Orientia tsutsugamushi Ikeda
DNA section
IS Length : 988 bp

Ends


IR Length : 15/18

IRL : ACGCCAGATTAGGATAAGTGGAAATATGAAATGTAGAGAATAAGAGGTAT
IRR : ACGTCAATTTAGGATAAGGAGTCAAGAGAAGAAGAAGAGATAAGATGAGG

Insertion site


Left flankDirect repeatRight flankDR Length
AAGTTTAGCATATAAATCTAAATAT5

DNA sequence

ACGCCAGATTAGGATAAGTGGAAATATGAAATGTAGAGAATAAGAGGTATACAAAGAGAGAATGTTGAGTTATAAAAAAATTTTAAATAAACAAGGAATA
ACACAACATGAAAAAATGTATTATAACAGTATACTATTTAATAGACAATTTTTACAAGATATATCAAGAGTGGGAGAGCAAAGAGATTAATACCAAGTAG
TAATCAAAAGAACAGAGATGAGAAGTTGTCCTTAGATGAGTTATTAACAATAGCGATATATTTTTATGTATCTCAATGCAAAGATTGTAAAAATTATTAT
CTATATTACTTGAGTTATAAGTATAAAGGATACTTTTGCTTACCAAGCTATAGTAGAATAATACAACTGTGGCCTAGAATGTTGCTACCATTAGCAATAT
TAATGCATTGTCTCAAAGGAGATGAGACTGGTATATTTACATCGATTCTACAAAGTTAGCAATTTGTCATAATAAACGTACCTCCAGCAATAGAGTTTTT
AACAAAATTTCTAAAATTGGTAAAAGTAGTTATGGCTCATTCTTAGACTTTAAGTTACATCTTATAATCAATAATAAAGGCGAAATAATGTCAGTTAAAA
TTACTAAAGGCAATAAAAGTGACATATCTGTAGCTTCAGTTTTTTCTGAAGGCTTATCTGGTAAATTGTTTGGTGATAAAGCTTACATATCTAAAGAGTT
ATTTCATCAACTGCTGACTAATGGTCTACGTTTATTTACTAATCTTGGTAAAGATATGAAAACATATTTATTGGACATACAAGATAATCGGTTATTAAAT
AAACGTTCTTTAATTGAGTCTGTCTTTAATGTACTAAAAAAACATATGCTTTTAGAGCATACTAGACACCGTTCTCATCTTAATTTTTTTGTTCATATAA
TTGCTTCTCTTGCTAGTTATTCTATCTCTAAACTTAATCCTCATCTTATCTCTTCTTCTTCTCTTGACTCCTTATCCTAAATTGACGT
Recoding section
  • Recoding by frameshift
  • Frame
  • Type
  • Experimentally demonstrated

Stimulators :

  • Shine-Dalgarno sequence :
  • Secondary structure :

Recoding motif :

Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
755 bp251 aa226980+Yes
ORF function : Transposase
Chemistry : DDE

ORF sequence :

 

Blast result :
Comments
The protein is degenerate, there is a frameshift at position 436 ( ponctual mutation).
The transposase of ISOt4 is 64% aa similar to ISPasp2.
References
1]Nakayama,K., Yamashita,A., Kurokawa,K., et al. (2008) DNA Res.
2]Hattori,M., Yamashita,A., Toh,H., Oshima,K. and Shiba,T. (2005) Direct submission GenBank.