ISThsp8

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 1929 bp

Ends


IR Length : 24/32

IRL : CCGGAGTTCGACAGTTTGAGTCAAAAATTGGCTGAAAACGCCGACCCGGC
IRR : CCGGAGTTCGACAGTTACGGTCGTAAGTACGCGATATCGTTAGGGTGAGC

Insertion site


Left flankDirect repeatRight flankDR Length
CGCGACAACCTGACACACCCGCGCCG6

DNA sequence

CCGGAGTTCGACAGTTTGAGTCAAAAATTGGCTGAAAACGCCGACCCGGCCTTGACGGAACAAAGGGTTAGCCTCGTTTTTGGAAAAGTACGTGTGGTGG
CACGTTTTTCCACATTGTGAGGCTGTTGCCATTGGCAGATGGGTTGGTGTATTGTGGCGGCATGTTCATCAAGATCACCACCTCCGGCGGTCGCCGCTAC
GTCCAGCTCGTGGAGTCCTACCGGGATGAGAGCGGGCGGGTGAAGAAACGCACGGTGGCCACCCTGGGGCGCGCCGACCAAGCTGGCAGCCAGCTTGAGA
GCGTGATCCGCGGCCTGCAGCGACTTCGCAGCGACACGCCGCCGGAGGCCGGCGCGGTGGCGACAGTGGCCGACGTGCGGTTCGAGTCCAGCCGCGCCCT
GGGCGACGTATGGGCGCTGACCGAGCTGTGGGACGAATTGGGATTTGGCGAGCTGCGCCGGGTTTTTGGTCGCACGCGCAGCCGCATCGACGTCGAGGCG
CTGGTGCGCCTGATGGTGCTCAACCGCCTGTGCGACCCGACGTCCAAGCTCGGCGTGCTGCGCTGGTTGCAGACGGTGGCGCTGCCGCGCTTTGCGCCCA
AGGAGGTGACGCATCAGCACCTGCTGCGGGCGATGGATGCGCTGGTCGAACACCAGGACTGCGTCCAGGCGGCGTTGGCCGGGCTGCTGCGCCCGCTGAT
CGACCAGGATCTGTCGGTGGTGTTCTACGACATGACCACCATCGGCGTGGAGGGCCAGACCGAGTTGGCCGGCGACCTGCGCCAGTTCGGCCTGTCCAAG
GACGGGGGGATGCGTCGCCAGTTCATGCTCGGCGTGGTGCAGACGGCCGAGGGACTGCCGCTGACGCATCGGGTCTGGGAAGGGAACACGGCCGAGGCAC
CGACGCTCAGCACCGTGGTCCAGGAGGTTCTGGCGCTGTACCCGGTCAAGCGCGTGGTGCTGGTGGCCGATCGCGGTCTGCTCAGCCTGGACAATCTGGA
GTGGCTGCGCGGGCAACGCGTGGGCGGCACCGAGCAGCCACTGGAGTTCATCCTGGCCGTGCCGGGGCGGCGTTATGCCGAATTCTCGGAGATTCTGGAG
CCGATCCACGCGCAGCGCTGCGCGGCAGCCACCCGCGAGGTCCTCGGCGAGACCCGCTGGCAGGACCTGCGCCTGGTCTGGGCCCACGATCCGCGCCGCG
CCCTGGAACAAACCGCAGCGCGCCGCCAGCATATCGGAGAACTCACGCAGGAAGCCCAGCAGCGTGCTGGCAAGCTTGATGCGCAAGAAGGCGGCACCGC
CTTCAGAGGCCGGCGCCTGAGCGACTCCGGTGCTAAGGCCTGGCTGTATCGCGCGGTCTCCGAGGCGCATCTGGGCTCGATCATCAAGGTCGACCTGCAA
TCGGATCTGTTCACCTACGTCATCGACGACAAGGCGCTGGCGCGTGCAGAACTGGGCGACGGCAAGCTGTTGTTGGTGACCAATGTGCCAGAGTTGTCGG
CGCTTGAGGTTCTGCGACGCTACAAGAGCCTGGCCGACATCGAGCGCGGCTTCAAGATTCTCAAATCCGAGATCGAGATCGCCCCGGTGTTCCACCGCTT
GCCCGACCGCATCCGTGCCCATGCGCTGATCTGCTTCATCGCTCTGGTGCTGTACCGCGTCATGCGCATGCGCCTCAAGGACGCCGGCTCCAAGCTGTCG
CCCGAACGTGCACTCGAGCAACTGCGACGCATCCAATACCACCAGGTCCACCTCGGCGGCGAGCGCCGCGACGGCACGTCCTCGCTCAGCGACGCCGACC
ACGCCATCCTCCAAGGACTCAAGCTTCCGAAACCCGCCATCGACGACCAACTCGCACTCCTGTAGGGGCACGTTTCAACGCTCACCCTAACGATATCGCG
TACTTACGACCGTAACTGTCGAACTCCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1704 bp567 aa1621865+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFIKITTSGGRRYVQLVESYRDESGRVKKRTVATLGRADQAGSQLESVIRGLQRLRSDTPPEAGAVATVADVRFESSRALGDVWALTELWDELGFGELRR
VFGRTRSRIDVEALVRLMVLNRLCDPTSKLGVLRWLQTVALPRFAPKEVTHQHLLRAMDALVEHQDCVQAALAGLLRPLIDQDLSVVFYDMTTIGVEGQT
ELAGDLRQFGLSKDGGMRRQFMLGVVQTAEGLPLTHRVWEGNTAEAPTLSTVVQEVLALYPVKRVVLVADRGLLSLDNLEWLRGQRVGGTEQPLEFILAV
PGRRYAEFSEILEPIHAQRCAAATREVLGETRWQDLRLVWAHDPRRALEQTAARRQHIGELTQEAQQRAGKLDAQEGGTAFRGRRLSDSGAKAWLYRAVS
EAHLGSIIKVDLQSDLFTYVIDDKALARAELGDGKLLLVTNVPELSALEVLRRYKSLADIERGFKILKSEIEIAPVFHRLPDRIRAHALICFIALVLYRV
MRMRLKDAGSKLSPERALEQLRRIQYHQVHLGGERRDGTSSLSDADHAILQGLKLPKPAIDDQLALL

 

Blast result :
Comments
ISThsp8 is 76% aa similar to ISCARN23.
References
1] Stephanie Weiss (2008) Direct submission.