ISHwa14

  • Family IS5
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1070 bp

Ends


IR Length : 21/25

IRL : GAGCCTGTTATAGAAAGCCTCACATGCGAAGCAGCAGGGTTTGGAGACAG
IRR : GAGCCTATTATAGAAACCATCTCATAGCTTGAGCTTCTCGCGGCCAGGGT

Insertion site


Left flankDirect repeatRight flankDR Length
TGTAATTATATATTGAGGAGCTACTTAC8

DNA sequence

GAGCCTGTTATAGAAAGCCTCACATGCGAAGCAGCAGGGTTTGGAGACAGTGTCTACAAGCTCCAAAGCCCTACGAAACGAAGTTTCGGTCGACGAGTTC
TTGAATGCAACGGCTACCGAGACGGTTCCGCTGTTTGAGCATCTCGACTTCGAGTTTCTACTGGAGTACGAAGTGTTCGCCCCCGGCGAGCGGGGGCGAA
CGCGAGTTCACAAACCACCAGACCTCTTTTGCGGCTTTCTACACTGTTACTACGTGGATGTCTACGGCACTTGTCCGATCACACGAGAACTCCAGCATAG
CCTTGTCTGGTACTACTGCGGACTCGACAAACCGCCGTCCAGAGACACTATTGATCGGTTTCTCACTGATCTCGAACACGTCGTTGACGATGTTTTCGAC
AGACTCATCGAGCAGGCCGCCGCCCGCGGCCTGCTCGACTCCACGTACTCCATCGATTCAACTCATGTCGAAGCGATCCAGCACAACGACGCCGCCTCGT
GGAACTACGACCCAACAGCCGAGGAGTACTACTACGGCTTCGGCTGTACACTCGTCTCAACCGGCGCAAAGATCCCGATAGCAGCGGAGTTCACACAGGC
TAAACAAGCGGATCAGGAGACGGCGATGCGCGTCACACGTGACGCGCTCGCCGTCGATACACCAATCTGGATGCTCGGAGACAGCGCCTACGATATCCTC
GACTGGCACGACCACCTGCTGACCGCAGGTGTCGTGCCAGTCGCCCCGTACAATCCACGAAACACTACCGACCCGAAAGACATCGAGTACAGAGTCGAAG
ACCGTATCGAAGAACACAGCGAGGGGGTTCAGCTCAAGCAATCCATCTTAGATGAGACGTACAATAACCGGACAGGAGTCGAACGAACCAACGATGCGGT
CAAGGACTGCGGTCTCGGGCACGTCCGCGCCCGAGGCCGCGTCCACGCACGAACAGAAGTGTTCCTTGCGCTGTGTCTCCGTCTCGTCGTTGCAATCACC
AACTTCGAGCGGGGGAGACGACCCTGGCCGCGAGAAGCTCAAGCTATGAGATGGTTTCTATAATAGGCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa501063+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTSSKALRNEVSVDEFLNATATETVPLFEHLDFEFLLEYEVFAPGERGRTRVHKPPDLFCGFLHCYYVDVYGTCPITRELQHSLVWYYCGLDKPPSRDT
IDRFLTDLEHVVDDVFDRLIEQAAARGLLDSTYSIDSTHVEAIQHNDAASWNYDPTAEEYYYGFGCTLVSTGAKIPIAAEFTQAKQADQETAMRVTRDAL
AVDTPIWMLGDSAYDILDWHDHLLTAGVVPVAPYNPRNTTDPKDIEYRVEDRIEEHSEGVQLKQSILDETYNNRTGVERTNDAVKDCGLGHVRARGRVHA
RTEVFLALCLRLVVAITNFERGRRPWPREAQAMRWFL

 

Blast result :
Comments
ISHwa14 is 82% aa similar to ISHma6.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968