ISSlo1
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009092 | ND | Shewanella loihica | Shewanella loihica PV-4 |
DNA section
IS Length : 1345 bp
Ends
IR Length : 11
IRL : ggatgatgagATGGACACCTCTTGTGAAGTCGGCGTCAAAAGCGCCATAT
IRR : -------tatATGGACACCTCGGATAGATCAAACATTTTGTGAGTAACAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GAGCCCACAT | TGTGCTTGCG | 0 | |
AAGCCCACAC | CGTGCTTGCG | 0 | |
AAGCCCACAC | TGTGCTCCAA | 0 | |
GAGCCCACAC | AGTGCTCGCG | 0 | |
AAGCCCACAT | TGTGCTTGTG | 0 |
DNA sequence
GGATGATGAGATGGACACCTCTTGTGAAGTCGGCGTCAAAAGCGCCATATTGAATTTACAAGGTTCAATGTCAACAAAAGGTGTCCACTATGAAAGTTAC
TCTAATTGGTATCGATTTGGCAAAAAATGTTCTTCAGGTTTGCGGTGTCAATCAAGTCGGTAAAACGCTCTTTAATCGCACCGTTAAACGCACTCAACTG
TTGAAAACGCTCGTTCAGTATCCAGATGCAGTGATTGCCATGGAAGCCTGTAGTGGCTCAAATTATTGGGGCCGAGAGCTGTTGTCGCGTGGATTTGAGG
TAAAACTTATCCCACCACAGCATGTGAAGCCCTTCGTGAAAGGCAATAAAAATGACCGCAATGATGCCTTTGCAATCTGTGAGGCTGCGATGCGCCCCAA
CATTATCTTCGTTAAGCCAAGAACCTTAGCGCAGGTCGATATCATTATTTCCCATCGAATTCGCGAGCGTCGTATTCGTGTCAGAACCGCGTTGACCAAT
CAAATACGTGGATTGTTGAGTGAATACGGCATTGTTATTCCCAAAGGCCGCGACCCGCTCAACCTTGCTCTACCTGAGTTACTCGAAGATGCCGATAACT
CACTAACCACCACCGCCCGCAGGTATATCAGAGAGTTACTTGATGAGCTATATGCCATCAATGCTTCGATTAAAGCACTGGAAAAAGAGATTCGACTACA
GGCAAGAAATCATGAAGATACCAAGCGGTTAACCGCCATACGAGGTGTCGCTGAAATTATTGCTACGGCGTCGGTATCGTTCGCTGGTGATGGTTCTGGG
TATCAAAATGGGCGACATTTCTCGGCAAATTTGGGGCTGGTACCGAAAGAATTCTCAAGTGGTGGAAAACAGAAATTAGGAGCTATCACCAAGCGGGGAA
ACAGCTATCTAAGACGACAGCTGATTCAAGGTGCTTGGTCTGTCATACGCTATGCAAAGAATAATGACGACAGGTTATCTGTCTGGGCAAGAAAGGTCAT
TGAACGAAGAGGCAAACAGAAAGCGGCGGTAGCTGTGGCCAACAAACTCGCCAGGATAATTTGGGCGATGCTTTACTACAAAACGGAGTACAGACCTAGC
TAAACAACAAGAACAATTACATACCCTAAAAACCGAACACAATTAATGAAGTAACAGGTAATACCGGCCTTCGTAAATGCTGAGAGAGCACAAGGTGTTG
TAACACCGAACGGACGATAAGCAGCGAAGGCGCGGTTCTCATTAAGGCCAGAGCACAATGATGCTCACAAACAGGTCGGATATACGTACGCAGTATTACT
TTCTGTTACTCACAAAATGTTTGATCTATCCGAGGTGTCCATATA
TCTAATTGGTATCGATTTGGCAAAAAATGTTCTTCAGGTTTGCGGTGTCAATCAAGTCGGTAAAACGCTCTTTAATCGCACCGTTAAACGCACTCAACTG
TTGAAAACGCTCGTTCAGTATCCAGATGCAGTGATTGCCATGGAAGCCTGTAGTGGCTCAAATTATTGGGGCCGAGAGCTGTTGTCGCGTGGATTTGAGG
TAAAACTTATCCCACCACAGCATGTGAAGCCCTTCGTGAAAGGCAATAAAAATGACCGCAATGATGCCTTTGCAATCTGTGAGGCTGCGATGCGCCCCAA
CATTATCTTCGTTAAGCCAAGAACCTTAGCGCAGGTCGATATCATTATTTCCCATCGAATTCGCGAGCGTCGTATTCGTGTCAGAACCGCGTTGACCAAT
CAAATACGTGGATTGTTGAGTGAATACGGCATTGTTATTCCCAAAGGCCGCGACCCGCTCAACCTTGCTCTACCTGAGTTACTCGAAGATGCCGATAACT
CACTAACCACCACCGCCCGCAGGTATATCAGAGAGTTACTTGATGAGCTATATGCCATCAATGCTTCGATTAAAGCACTGGAAAAAGAGATTCGACTACA
GGCAAGAAATCATGAAGATACCAAGCGGTTAACCGCCATACGAGGTGTCGCTGAAATTATTGCTACGGCGTCGGTATCGTTCGCTGGTGATGGTTCTGGG
TATCAAAATGGGCGACATTTCTCGGCAAATTTGGGGCTGGTACCGAAAGAATTCTCAAGTGGTGGAAAACAGAAATTAGGAGCTATCACCAAGCGGGGAA
ACAGCTATCTAAGACGACAGCTGATTCAAGGTGCTTGGTCTGTCATACGCTATGCAAAGAATAATGACGACAGGTTATCTGTCTGGGCAAGAAAGGTCAT
TGAACGAAGAGGCAAACAGAAAGCGGCGGTAGCTGTGGCCAACAAACTCGCCAGGATAATTTGGGCGATGCTTTACTACAAAACGGAGTACAGACCTAGC
TAAACAACAAGAACAATTACATACCCTAAAAACCGAACACAATTAATGAAGTAACAGGTAATACCGGCCTTCGTAAATGCTGAGAGAGCACAAGGTGTTG
TAACACCGAACGGACGATAAGCAGCGAAGGCGCGGTTCTCATTAAGGCCAGAGCACAATGATGCTCACAAACAGGTCGGATATACGTACGCAGTATTACT
TTCTGTTACTCACAAAATGTTTGATCTATCCGAGGTGTCCATATA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1014 bp | 337 aa | 90 | 1103 | + | No |
Chemistry : DEDD
ORF sequence :
MKVTLIGIDLAKNVLQVCGVNQVGKTLFNRTVKRTQLLKTLVQYPDAVIAMEACSGSNYWGRELLSRGFEVKLIPPQHVKPFVKGNKNDRNDAFAICEAA
MRPNIIFVKPRTLAQVDIIISHRIRERRIRVRTALTNQIRGLLSEYGIVIPKGRDPLNLALPELLEDADNSLTTTARRYIRELLDELYAINASIKALEKE
IRLQARNHEDTKRLTAIRGVAEIIATASVSFAGDGSGYQNGRHFSANLGLVPKEFSSGGKQKLGAITKRGNSYLRRQLIQGAWSVIRYAKNNDDRLSVWA
RKVIERRGKQKAAVAVANKLARIIWAMLYYKTEYRPS
MRPNIIFVKPRTLAQVDIIISHRIRERRIRVRTALTNQIRGLLSEYGIVIPKGRDPLNLALPELLEDADNSLTTTARRYIRELLDELYAINASIKALEKE
IRLQARNHEDTKRLTAIRGVAEIIATASVSFAGDGSGYQNGRHFSANLGLVPKEFSSGGKQKLGAITKRGNSYLRRQLIQGAWSVIRYAKNNDDRLSVWA
RKVIERRGKQKAAVAVANKLARIIWAMLYYKTEYRPS
Blast result :
Comments
There are 5 copies of ISSlo1 encoded on the Shewanella loihica PV-4 genome. The ISSlo1 transposase has 81% identity to ISShes7. The inverted repeat are not at the termini of the IS but start at position 11 on the 5' end and at position 4 on the 3' end.
References
1] Romine, M.F. (2008) Direct submission.