ISSlo1

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009092 ND Shewanella loihica
Shewanella loihica PV-4
DNA section
IS Length : 1345 bp

Ends


IR Length : 11

IRL : ggatgatgagATGGACACCTCTTGTGAAGTCGGCGTCAAAAGCGCCATAT
IRR : -------tatATGGACACCTCGGATAGATCAAACATTTTGTGAGTAACAG

Insertion site


Left flankDirect repeatRight flankDR Length
GAGCCCACATTGTGCTTGCG0
AAGCCCACACCGTGCTTGCG0
AAGCCCACACTGTGCTCCAA0
GAGCCCACACAGTGCTCGCG0
AAGCCCACATTGTGCTTGTG0

DNA sequence

GGATGATGAGATGGACACCTCTTGTGAAGTCGGCGTCAAAAGCGCCATATTGAATTTACAAGGTTCAATGTCAACAAAAGGTGTCCACTATGAAAGTTAC
TCTAATTGGTATCGATTTGGCAAAAAATGTTCTTCAGGTTTGCGGTGTCAATCAAGTCGGTAAAACGCTCTTTAATCGCACCGTTAAACGCACTCAACTG
TTGAAAACGCTCGTTCAGTATCCAGATGCAGTGATTGCCATGGAAGCCTGTAGTGGCTCAAATTATTGGGGCCGAGAGCTGTTGTCGCGTGGATTTGAGG
TAAAACTTATCCCACCACAGCATGTGAAGCCCTTCGTGAAAGGCAATAAAAATGACCGCAATGATGCCTTTGCAATCTGTGAGGCTGCGATGCGCCCCAA
CATTATCTTCGTTAAGCCAAGAACCTTAGCGCAGGTCGATATCATTATTTCCCATCGAATTCGCGAGCGTCGTATTCGTGTCAGAACCGCGTTGACCAAT
CAAATACGTGGATTGTTGAGTGAATACGGCATTGTTATTCCCAAAGGCCGCGACCCGCTCAACCTTGCTCTACCTGAGTTACTCGAAGATGCCGATAACT
CACTAACCACCACCGCCCGCAGGTATATCAGAGAGTTACTTGATGAGCTATATGCCATCAATGCTTCGATTAAAGCACTGGAAAAAGAGATTCGACTACA
GGCAAGAAATCATGAAGATACCAAGCGGTTAACCGCCATACGAGGTGTCGCTGAAATTATTGCTACGGCGTCGGTATCGTTCGCTGGTGATGGTTCTGGG
TATCAAAATGGGCGACATTTCTCGGCAAATTTGGGGCTGGTACCGAAAGAATTCTCAAGTGGTGGAAAACAGAAATTAGGAGCTATCACCAAGCGGGGAA
ACAGCTATCTAAGACGACAGCTGATTCAAGGTGCTTGGTCTGTCATACGCTATGCAAAGAATAATGACGACAGGTTATCTGTCTGGGCAAGAAAGGTCAT
TGAACGAAGAGGCAAACAGAAAGCGGCGGTAGCTGTGGCCAACAAACTCGCCAGGATAATTTGGGCGATGCTTTACTACAAAACGGAGTACAGACCTAGC
TAAACAACAAGAACAATTACATACCCTAAAAACCGAACACAATTAATGAAGTAACAGGTAATACCGGCCTTCGTAAATGCTGAGAGAGCACAAGGTGTTG
TAACACCGAACGGACGATAAGCAGCGAAGGCGCGGTTCTCATTAAGGCCAGAGCACAATGATGCTCACAAACAGGTCGGATATACGTACGCAGTATTACT
TTCTGTTACTCACAAAATGTTTGATCTATCCGAGGTGTCCATATA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1014 bp337 aa901103+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MKVTLIGIDLAKNVLQVCGVNQVGKTLFNRTVKRTQLLKTLVQYPDAVIAMEACSGSNYWGRELLSRGFEVKLIPPQHVKPFVKGNKNDRNDAFAICEAA
MRPNIIFVKPRTLAQVDIIISHRIRERRIRVRTALTNQIRGLLSEYGIVIPKGRDPLNLALPELLEDADNSLTTTARRYIRELLDELYAINASIKALEKE
IRLQARNHEDTKRLTAIRGVAEIIATASVSFAGDGSGYQNGRHFSANLGLVPKEFSSGGKQKLGAITKRGNSYLRRQLIQGAWSVIRYAKNNDDRLSVWA
RKVIERRGKQKAAVAVANKLARIIWAMLYYKTEYRPS

 

Blast result :
Comments
There are 5 copies of ISSlo1 encoded on the Shewanella loihica PV-4 genome. The ISSlo1 transposase has 81% identity to ISShes7. The inverted repeat are not at the termini of the IS but start at position 11 on the 5' end and at position 4 on the 3' end.
References
1] Romine, M.F. (2008) Direct submission.