ISSag8
- Family IS1182
- Group
Isoform IS1563Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP000114 | ND | Streptococcus agalactiae | Streptococcus agalactiae A909 |
DNA section
IS Length : 1538 bp
Ends
IR Length : 15
IRL : CAGATTGAAGACAAAGTCCTTAGACATTCACTTTTCTAAGGACTTTTCTG
IRR : CAGATTGAAGACAAACTGGAATGTTAATCCAGCTTGTCTTTTCTTTTACT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATACTTATAA | AGACAAGGTTTCTAAACCTTGTCT | TTTTTCTACT | 24 |
ACTAAATAAA | AGACAGTACCTAAGGTACTGTCT | TTTATTTATA | 23 |
ATTAATAAAA | AGAGATGAAATAGATTTCATCTCT | TTTTATTAAA | 24 |
CTAACTAGAA | AAAGACACTAAATCAGTGTCTTT | TTCTTATAAT | 23 |
GGTGTAAAAT | AAAAACTGAGCTATGCTCAGTTTTT | TTGATGAGTC | 25 |
DNA sequence
CAGATTGAAGACAAAGTCCTTAGACATTCACTTTTCTAAGGACTTTTCTGTTTGTCTAGAGTTATAATAAAGGTAAGGTGTTCTGGGAGGTATTGCTATG
TTCCACAAAGAAAATCCTGACTATAATCGAAATCAAGTTGGTTTCTATAGTTTAGATGAGTTGGTTCCCAAAGACCATCTCTTGCGTCAAATTGATGAAG
CGATAGATTTTTCATTTATTTATGACTTAGTGAAAGACAGTTATTGTGCAGATAACGGTCGTCCTAGTTTGGATCCGGTCATGTTAGTAAAAATCCCCAT
GATTCAATGTCTCTTTGGCATTCGTTCCATGCGTCAAACCATCAAGGACATTGAGGTTAATGTGGCTTACCGCTGGTTTCTTGGGTTGACTTTAGAAGAT
AAGGTGCCTCATTTCACAACTTATGGTAAGAACTATAATCGTCGTTTCCAGGATAAACAAGTCATTGAAGCAATTTTTGCTTATATCTTGGGGCTCTGTC
TCAATGCTGGTTTGATTGACCCCACTGATATCTTTGTGGATGGGACTCATATCAAGGCAGCCGCTAACAATCACAAATACATCAATCAAGAAGTCGATGC
ACAAGCTAAATTTATGAGTGATCAGTTGGAGAAGGAAATTGCTAAAGATAGGGAAAAACATGGAAAAAAGTCGCTAGGAATCGCCAAAGAAAAAGAGCCC
ATAAGTAAGAAAATCTCTACAACCGACCCTGATAGTGGTTGGTTTCATAAGGGAGAACATAAGCAAGTTTTTGCTTATAATGCCCAGGTAGCTTGTGATA
AGTATGGTTGGGCACTAGGCTATAGTATCCACGCAGGGAATGTCCATGATAGTCAGGCATTTCCTGAACTCTTTGACAAAATCAAAGCATTGACTCCTCA
CTATCTCATCGCTGATTCTGGTTATAAAACTCCAAGCATCGCGCATTACCTATTAACTATAGGTATCATACCAGTTTTTTCTTATACTAGACCTCGTAGT
AAAAAGGGTATGCTTCGGCTAAAAGACTTTATTTATGATGAGTATTATGATGTTTACCTCTGTCCAGAAAATCACCCCTTATCCTATTCAACGACTACTC
GAGATGGCTATCGTGAGTATAAAAGTAATCCAGCTGTATGCCAGTCTTGTCCCTTATTATCGGTTTGTACCCAATCAAAAAACCATCAAAAAGTAATCAC
TCGTCATCTCTGGAAAGATGATTTAGAGGTCTGTGAAGACATCCGACACCAAAGAGGGATGAAGGAACGCTATCAACAGCGCAAAGAAACCATTGAGCGT
TTGTTTGGAACAGCTAAAGAATACCACAACTTACGTTACACGAGATTAAGAGGAAAGTCCAAAATGGAGGCAACCCTTGGGCTGACTTTAGCGTGCTTAA
ATATGAAAAAATATAGTAAGATAATGGCTGGAATAGTCTTTTTAGTTTGCCTAAAAGTGATCATATCAAGACCAATTGTGATAACAATAGTAAAAGAAAA
GACAAGCTGGATTAACATTCCAGTTTGTCTTCAATCTG
TTCCACAAAGAAAATCCTGACTATAATCGAAATCAAGTTGGTTTCTATAGTTTAGATGAGTTGGTTCCCAAAGACCATCTCTTGCGTCAAATTGATGAAG
CGATAGATTTTTCATTTATTTATGACTTAGTGAAAGACAGTTATTGTGCAGATAACGGTCGTCCTAGTTTGGATCCGGTCATGTTAGTAAAAATCCCCAT
GATTCAATGTCTCTTTGGCATTCGTTCCATGCGTCAAACCATCAAGGACATTGAGGTTAATGTGGCTTACCGCTGGTTTCTTGGGTTGACTTTAGAAGAT
AAGGTGCCTCATTTCACAACTTATGGTAAGAACTATAATCGTCGTTTCCAGGATAAACAAGTCATTGAAGCAATTTTTGCTTATATCTTGGGGCTCTGTC
TCAATGCTGGTTTGATTGACCCCACTGATATCTTTGTGGATGGGACTCATATCAAGGCAGCCGCTAACAATCACAAATACATCAATCAAGAAGTCGATGC
ACAAGCTAAATTTATGAGTGATCAGTTGGAGAAGGAAATTGCTAAAGATAGGGAAAAACATGGAAAAAAGTCGCTAGGAATCGCCAAAGAAAAAGAGCCC
ATAAGTAAGAAAATCTCTACAACCGACCCTGATAGTGGTTGGTTTCATAAGGGAGAACATAAGCAAGTTTTTGCTTATAATGCCCAGGTAGCTTGTGATA
AGTATGGTTGGGCACTAGGCTATAGTATCCACGCAGGGAATGTCCATGATAGTCAGGCATTTCCTGAACTCTTTGACAAAATCAAAGCATTGACTCCTCA
CTATCTCATCGCTGATTCTGGTTATAAAACTCCAAGCATCGCGCATTACCTATTAACTATAGGTATCATACCAGTTTTTTCTTATACTAGACCTCGTAGT
AAAAAGGGTATGCTTCGGCTAAAAGACTTTATTTATGATGAGTATTATGATGTTTACCTCTGTCCAGAAAATCACCCCTTATCCTATTCAACGACTACTC
GAGATGGCTATCGTGAGTATAAAAGTAATCCAGCTGTATGCCAGTCTTGTCCCTTATTATCGGTTTGTACCCAATCAAAAAACCATCAAAAAGTAATCAC
TCGTCATCTCTGGAAAGATGATTTAGAGGTCTGTGAAGACATCCGACACCAAAGAGGGATGAAGGAACGCTATCAACAGCGCAAAGAAACCATTGAGCGT
TTGTTTGGAACAGCTAAAGAATACCACAACTTACGTTACACGAGATTAAGAGGAAAGTCCAAAATGGAGGCAACCCTTGGGCTGACTTTAGCGTGCTTAA
ATATGAAAAAATATAGTAAGATAATGGCTGGAATAGTCTTTTTAGTTTGCCTAAAAGTGATCATATCAAGACCAATTGTGATAACAATAGTAAAAGAAAA
GACAAGCTGGATTAACATTCCAGTTTGTCTTCAATCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1491 bp | 496 aa | 98 | 1588 | + | No |
Chemistry : DDE
ORF sequence :
MFHKENPDYNRNQVGFYSLDELVPKDHLLRQIDEAIDFSFIYDLVKDSYCADNGRPSLDPVMLVKIPMIQCLFGIRSMRQTIKDIEVNVAYRWFLGLTLE
DKVPHFTTYGKNYNRRFQDKQVIEAIFAYILGLCLNAGLIDPTDIFVDGTHIKAAANNHKYINQEVDAQAKFMSDQLEKEIAKDREKHGKKSLGIAKEKE
PISKKISTTDPDSGWFHKGEHKQVFAYNAQVACDKYGWALGYSIHAGNVHDSQAFPELFDKIKALTPHYLIADSGYKTPSIAHYLLTIGIIPVFSYTRPR
SKKGMLRLKDFIYDEYYDVYLCPENHPLSYSTTTRDGYREYKSNPAVCQSCPLLSVCTQSKNHQKVITRHLWKDDLEVCEDIRHQRGMKERYQQRKETIE
RLFGTAKEYHNLRYTRLRGKSKMEATLGLTLACLNMKKYSKIMAGIVFLVCLKVIISRPIVITIVKEKTSWINIPVCLQSETRFLNLVFFLLDNLL
DKVPHFTTYGKNYNRRFQDKQVIEAIFAYILGLCLNAGLIDPTDIFVDGTHIKAAANNHKYINQEVDAQAKFMSDQLEKEIAKDREKHGKKSLGIAKEKE
PISKKISTTDPDSGWFHKGEHKQVFAYNAQVACDKYGWALGYSIHAGNVHDSQAFPELFDKIKALTPHYLIADSGYKTPSIAHYLLTIGIIPVFSYTRPR
SKKGMLRLKDFIYDEYYDVYLCPENHPLSYSTTTRDGYREYKSNPAVCQSCPLLSVCTQSKNHQKVITRHLWKDDLEVCEDIRHQRGMKERYQQRKETIE
RLFGTAKEYHNLRYTRLRGKSKMEATLGLTLACLNMKKYSKIMAGIVFLVCLKVIISRPIVITIVKEKTSWINIPVCLQSETRFLNLVFFLLDNLL
Blast result :
Comments
There are 5 copies of ISSag8 in the chromosome of Streptococcus agalactiae A909. Note that there is no stop site for the transposase gene within the element. The translational stop site for this transposase gene is located outside the IS element.The transposase is between 482 and 496 aa long.
ISSag8 is 86% aa similar to IS1562.
ISSag8 is 86% aa similar to IS1562.
References
1] DeBoy,R (2005) Direct submission
2] Tettelin,H., Masignani,V., Cieslewicz,M.J., Donati,C., Medini,D., Ward,N.L., Angiuoli,S.V., Crabtree,J., Jones,A.L., Durkin,A.S., Deboy,R.T., Davidsen,T.M., Mora,M., Scarselli,M., Margarit Y, Ros,I., Peterson,J.D., Hauser,C.R., Sundaram,J.P., Nelson,W.C., Madupu,R., Brinkac,L.M., Dodson,R.J., Rosovitz,M.J., Sullivan,S.A., Daugherty,S.C., Haft,D.H., Selengut,J., Gwinn,M.L., Zhou,L., Zafar,N., Khouri,H., Radune,D., Dimitrov,G., Watkins,K., O'connor,K.J., Smith,S., Utterback,T.R., White,O., Rubens,C.E., Grandi,G., Madoff,L.C., Kasper,D.L., Telford,J.L., Wessels,M.R., Rappuoli,R. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (39), 13950-13955
3] ISfinder annotation (2008)
2] Tettelin,H., Masignani,V., Cieslewicz,M.J., Donati,C., Medini,D., Ward,N.L., Angiuoli,S.V., Crabtree,J., Jones,A.L., Durkin,A.S., Deboy,R.T., Davidsen,T.M., Mora,M., Scarselli,M., Margarit Y, Ros,I., Peterson,J.D., Hauser,C.R., Sundaram,J.P., Nelson,W.C., Madupu,R., Brinkac,L.M., Dodson,R.J., Rosovitz,M.J., Sullivan,S.A., Daugherty,S.C., Haft,D.H., Selengut,J., Gwinn,M.L., Zhou,L., Zafar,N., Khouri,H., Radune,D., Dimitrov,G., Watkins,K., O'connor,K.J., Smith,S., Utterback,T.R., White,O., Rubens,C.E., Grandi,G., Madoff,L.C., Kasper,D.L., Telford,J.L., Wessels,M.R., Rappuoli,R. and Fraser,C.M. (2005) Proc. Natl. Acad. Sci. U.S.A. 102 (39), 13950-13955
3] ISfinder annotation (2008)