ISThsp2

  • Family IS21
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Thiomonas sp.
Thiomonas sp. 3As
DNA section
IS Length : 2644 bp

Ends


IR Length : 24/28

IRL : TGTTCGTGCCGAACGAAAATTGACCCACTTTTGAAGGTTATGCCGACGCA
IRR : TGTTCGTGCCGATGGAATTTTGACCCACCGTGCCGATTCAATTTTGACCC

Insertion site


Left flankDirect repeatRight flankDR Length
CTTGAGCTTGGTCTCGAGCGCTTCTTTG8

DNA sequence

TGTTCGTGCCGAACGAAAATTGACCCACTTTTGAAGGTTATGCCGACGCAAAATTGACCCGGGTGTTCCACCTACCCTGCTGCTTTTTTAGGCACGGGGA
GCAGGAGTGATCACCATGGACATGATTGGCAAGATCCGGCGGATGCATTTCCGCCAGAACAAATCCGTTCGAGAGATTGCCCGCAGTACGGGGCTGTCGC
GCAACACGGTGCGTACCTGGCTACGCCAGCCGGGCGATGTCGTACCGCGGTACGCGGCGCGGCGAACACAACCCTCGCGCAAGCTCGCGCCCTATGTGGA
GTGGCTCCGGCAGGCCGTGGCCATTGATGCGCAGCGTCCTAAAGCGCAGCGGCGCACGGCCAGGGCATTGCATGCCGAGTTGAAGCGACAAGGCTATGAC
GGCGCCTACAGCCGCGTCACCGATTTACTGCGCGCTTGGCGACAGGCCGATGGCACGAGCGCTGTGCACGCCTTCGTGCCCTTGACGTTTGCGCTGGGCG
AAGCCTTCCAGTTCGACTGGAGTGAAGAGAGCATGGTGGTGGGCGGCGTGCCGTACCGCGTGCAGGTTGCCCACGTCAAGCTGTGCGCCAGCCGTGCCTT
CTGGCTGGGGGCCTATCCCAGCCAAGGTCACGAGATGCTGTTTGACGCCCATACCCAGGCGTTTGCCGCCTTCGGCGGAGTGCCGCATCGCGGCATCTAT
GACAACATGAAGACAGCCGTCGACAAAGTGCACCCGCGCAAGAAGCGCGACGTCAACGCGCGCTTTGCGGCGATGTGCAGCCACTACCTGTTCGACCCCG
ACTTCTGCAACGTCGCTTCCGGTTGGGAGAAGGGGGTGGTGGAGAAGAACGTCCAGGACAGCAGGCGACGTGTGTGGATTGAGGCCCTGTCGACGCCCTG
GCGCTCCTTTGCCGAACTCAATGCCTGGCTGGCCATGCGCTGCCGTGGCTTGTGGCAGGAGATCTTCCATCCCGAGTTCAGCCAGTTCACCGTGGCCGAG
ATGCTCGAGCACGAGCAGCCGCACCTCATGCCCATGCCCACAGCGTTCGACGGCTATGTGGACAACACGGTCAAGGTCAGCAGCACCTGTCTGGTGGCCA
TGGCTGGCAATCGTTACTCCGTGCCCTGTGAACTCGCCGGGCGGCGGGTGAGCACCCGGGTGTATCCCACCGAGGTGGTCGTGGTGCATGACGGCGTGTG
TGTGGCCCGCCATGCGCGGCTGGCCAACCGGGGACAGACCACCTACGACTGGCAGCACTATGTGCCGCTGATTCAACGCAAACCCGGGGCGTTGCGCAAC
GGCGCGCCGTTTGCCGATCTGCCCCAGCCCTTGCAGCAACTGCGCCAGGCGCTGCTGCGGCAAGACGGGGGCGACCGGCTCATGGCCCAGGTGCTGGCGC
TGGTGCCCGCATCCGGGCTGGAGGCGGTCCTGGTGGCCGCTGCGCTGGTGCTGGAAGCCACGGCCCCGTCCGGGCGCATCAGCGTGGAGCATGTGGTCAA
CGTGATGGGGCGCTTGCAGACCGGCCCCCAGCCCGCCCAAGTGACCACGGCCTTGACGATGGCCGATCCACCCCGCGCCGACACGGCCCGCTATGACCGC
CTGCGGGTGACTGACGAGGAGCGAGATCATGCGTGAGGTCATTGCGGAACTCAAGGCGTTGCGGCTGCACGGCATGGCCGGCGCCTGGGCCGATTTGCAA
GGTCTGGGGACGAACGCCAGGCTGGATGCCGCGCAGTGGCTCGTCGAGCATTTGCTGCAGGCCGAGCAGGAAGATCGCGCCGTGCGCTCGGTACGCCATC
AAATCCTCTCGGCCCGCTTCCCGGTGCACCGCGATCTAGCGGGGTTTGACTTTGATGCCTCAAGGGTTGATCGCACGCTGGTGGGGCAACTCGCCAGCAT
GGCCTTTACCGAAGCCGCGCACAACGTCGTGCTGGTGGGCGGGCCCGGCACGGGAAAGAGCCATCTGGGCACGGCCATCGGCGTGGCGGGCATCACGCAG
CACGGCAAGCGGGTGCGGTTTTACTCCACCGTCGATCTGGTCAACGCGCTGGAGCAGGAGAAGGCGCAGGGCAAAGCCGGGCGGATTGCGGCAAGCCTCT
TGCGTATGGACTTGGTCATTCTCGATGAGCTGGGGTATCTGCCCTTCAGTCAGGCGGGCGGGGCTTTGTTGTTCCATCTGCTGTCCAAGCTCTACGAGCA
CACCAGCGTGCTGATCACGACCAATCTGGCCTTCGGCGAGTGGTCCAGCGTGTTCATCGATGCGAAGATGACCACCGCCTTGCTCGACCGGCTCACACAC
CACTGCCACATTCTGGAAACCGGGAACGAGAGCTACCGCTTCCGTCACAGCACGGAAACCGCCAAGACCCGCATCAAGGCGCGGGAGCAAAGGCGTTCGG
GCACAGCACAGGCACCCCAGCCCGCTGAGCCCGAGACACCGCTTTGACCCCCACAAGCCCTTGGGGCAAGCCGCTCTGGGCTACGCCCGACGCAGCTTGC
CCCAAGGATCCAAACCCACCCACCAGGAGCCAACCCCACGCAAAAACCGTAGACTTATCCACACCCGACTGCGACGCAGTCGGCCTTAGACCCCGGGTCA
AAATTGAATCGGCACGGTGGGTCAAAATTCCATCGGCACGAACA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
1521 bp506 aa1161636+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MDMIGKIRRMHFRQNKSVREIARSTGLSRNTVRTWLRQPGDVVPRYAARRTQPSRKLAPYVEWLRQAVAIDAQRPKAQRRTARALHAELKRQGYDGAYSR
VTDLLRAWRQADGTSAVHAFVPLTFALGEAFQFDWSEESMVVGGVPYRVQVAHVKLCASRAFWLGAYPSQGHEMLFDAHTQAFAAFGGVPHRGIYDNMKT
AVDKVHPRKKRDVNARFAAMCSHYLFDPDFCNVASGWEKGVVEKNVQDSRRRVWIEALSTPWRSFAELNAWLAMRCRGLWQEIFHPEFSQFTVAEMLEHE
QPHLMPMPTAFDGYVDNTVKVSSTCLVAMAGNRYSVPCELAGRRVSTRVYPTEVVVVHDGVCVARHARLANRGQTTYDWQHYVPLIQRKPGALRNGAPFA
DLPQPLQQLRQALLRQDGGDRLMAQVLALVPASGLEAVLVAAALVLEATAPSGRISVEHVVNVMGRLQTGPQPAQVTTALTMADPPRADTARYDRLRVTD
EERDHA

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
819 bp272 aa16292447+No
ORF function : Accessory Gene
AG : IS21 helper

ORF sequence :

MREVIAELKALRLHGMAGAWADLQGLGTNARLDAAQWLVEHLLQAEQEDRAVRSVRHQILSARFPVHRDLAGFDFDASRVDRTLVGQLASMAFTEAAHNV
VLVGGPGTGKSHLGTAIGVAGITQHGKRVRFYSTVDLVNALEQEKAQGKAGRIAASLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVLITTNL
AFGEWSSVFIDAKMTTALLDRLTHHCHILETGNESYRFRHSTETAKTRIKAREQRRSGTAQAPQPAEPETPL

 

Blast result :
Comments
ISThsp2 is 75% (ORFA) aa similar to ISPst2 and 83% (ORFB) to ISPst3
References