ISThsp2
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Thiomonas sp. | Thiomonas sp. 3As |
DNA section
IS Length : 2644 bp
Ends
IR Length : 24/28
IRL : TGTTCGTGCCGAACGAAAATTGACCCACTTTTGAAGGTTATGCCGACGCA
IRR : TGTTCGTGCCGATGGAATTTTGACCCACCGTGCCGATTCAATTTTGACCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CTTGAGCTTG | GTCTCGAG | CGCTTCTTTG | 8 |
DNA sequence
TGTTCGTGCCGAACGAAAATTGACCCACTTTTGAAGGTTATGCCGACGCAAAATTGACCCGGGTGTTCCACCTACCCTGCTGCTTTTTTAGGCACGGGGA
GCAGGAGTGATCACCATGGACATGATTGGCAAGATCCGGCGGATGCATTTCCGCCAGAACAAATCCGTTCGAGAGATTGCCCGCAGTACGGGGCTGTCGC
GCAACACGGTGCGTACCTGGCTACGCCAGCCGGGCGATGTCGTACCGCGGTACGCGGCGCGGCGAACACAACCCTCGCGCAAGCTCGCGCCCTATGTGGA
GTGGCTCCGGCAGGCCGTGGCCATTGATGCGCAGCGTCCTAAAGCGCAGCGGCGCACGGCCAGGGCATTGCATGCCGAGTTGAAGCGACAAGGCTATGAC
GGCGCCTACAGCCGCGTCACCGATTTACTGCGCGCTTGGCGACAGGCCGATGGCACGAGCGCTGTGCACGCCTTCGTGCCCTTGACGTTTGCGCTGGGCG
AAGCCTTCCAGTTCGACTGGAGTGAAGAGAGCATGGTGGTGGGCGGCGTGCCGTACCGCGTGCAGGTTGCCCACGTCAAGCTGTGCGCCAGCCGTGCCTT
CTGGCTGGGGGCCTATCCCAGCCAAGGTCACGAGATGCTGTTTGACGCCCATACCCAGGCGTTTGCCGCCTTCGGCGGAGTGCCGCATCGCGGCATCTAT
GACAACATGAAGACAGCCGTCGACAAAGTGCACCCGCGCAAGAAGCGCGACGTCAACGCGCGCTTTGCGGCGATGTGCAGCCACTACCTGTTCGACCCCG
ACTTCTGCAACGTCGCTTCCGGTTGGGAGAAGGGGGTGGTGGAGAAGAACGTCCAGGACAGCAGGCGACGTGTGTGGATTGAGGCCCTGTCGACGCCCTG
GCGCTCCTTTGCCGAACTCAATGCCTGGCTGGCCATGCGCTGCCGTGGCTTGTGGCAGGAGATCTTCCATCCCGAGTTCAGCCAGTTCACCGTGGCCGAG
ATGCTCGAGCACGAGCAGCCGCACCTCATGCCCATGCCCACAGCGTTCGACGGCTATGTGGACAACACGGTCAAGGTCAGCAGCACCTGTCTGGTGGCCA
TGGCTGGCAATCGTTACTCCGTGCCCTGTGAACTCGCCGGGCGGCGGGTGAGCACCCGGGTGTATCCCACCGAGGTGGTCGTGGTGCATGACGGCGTGTG
TGTGGCCCGCCATGCGCGGCTGGCCAACCGGGGACAGACCACCTACGACTGGCAGCACTATGTGCCGCTGATTCAACGCAAACCCGGGGCGTTGCGCAAC
GGCGCGCCGTTTGCCGATCTGCCCCAGCCCTTGCAGCAACTGCGCCAGGCGCTGCTGCGGCAAGACGGGGGCGACCGGCTCATGGCCCAGGTGCTGGCGC
TGGTGCCCGCATCCGGGCTGGAGGCGGTCCTGGTGGCCGCTGCGCTGGTGCTGGAAGCCACGGCCCCGTCCGGGCGCATCAGCGTGGAGCATGTGGTCAA
CGTGATGGGGCGCTTGCAGACCGGCCCCCAGCCCGCCCAAGTGACCACGGCCTTGACGATGGCCGATCCACCCCGCGCCGACACGGCCCGCTATGACCGC
CTGCGGGTGACTGACGAGGAGCGAGATCATGCGTGAGGTCATTGCGGAACTCAAGGCGTTGCGGCTGCACGGCATGGCCGGCGCCTGGGCCGATTTGCAA
GGTCTGGGGACGAACGCCAGGCTGGATGCCGCGCAGTGGCTCGTCGAGCATTTGCTGCAGGCCGAGCAGGAAGATCGCGCCGTGCGCTCGGTACGCCATC
AAATCCTCTCGGCCCGCTTCCCGGTGCACCGCGATCTAGCGGGGTTTGACTTTGATGCCTCAAGGGTTGATCGCACGCTGGTGGGGCAACTCGCCAGCAT
GGCCTTTACCGAAGCCGCGCACAACGTCGTGCTGGTGGGCGGGCCCGGCACGGGAAAGAGCCATCTGGGCACGGCCATCGGCGTGGCGGGCATCACGCAG
CACGGCAAGCGGGTGCGGTTTTACTCCACCGTCGATCTGGTCAACGCGCTGGAGCAGGAGAAGGCGCAGGGCAAAGCCGGGCGGATTGCGGCAAGCCTCT
TGCGTATGGACTTGGTCATTCTCGATGAGCTGGGGTATCTGCCCTTCAGTCAGGCGGGCGGGGCTTTGTTGTTCCATCTGCTGTCCAAGCTCTACGAGCA
CACCAGCGTGCTGATCACGACCAATCTGGCCTTCGGCGAGTGGTCCAGCGTGTTCATCGATGCGAAGATGACCACCGCCTTGCTCGACCGGCTCACACAC
CACTGCCACATTCTGGAAACCGGGAACGAGAGCTACCGCTTCCGTCACAGCACGGAAACCGCCAAGACCCGCATCAAGGCGCGGGAGCAAAGGCGTTCGG
GCACAGCACAGGCACCCCAGCCCGCTGAGCCCGAGACACCGCTTTGACCCCCACAAGCCCTTGGGGCAAGCCGCTCTGGGCTACGCCCGACGCAGCTTGC
CCCAAGGATCCAAACCCACCCACCAGGAGCCAACCCCACGCAAAAACCGTAGACTTATCCACACCCGACTGCGACGCAGTCGGCCTTAGACCCCGGGTCA
AAATTGAATCGGCACGGTGGGTCAAAATTCCATCGGCACGAACA
GCAGGAGTGATCACCATGGACATGATTGGCAAGATCCGGCGGATGCATTTCCGCCAGAACAAATCCGTTCGAGAGATTGCCCGCAGTACGGGGCTGTCGC
GCAACACGGTGCGTACCTGGCTACGCCAGCCGGGCGATGTCGTACCGCGGTACGCGGCGCGGCGAACACAACCCTCGCGCAAGCTCGCGCCCTATGTGGA
GTGGCTCCGGCAGGCCGTGGCCATTGATGCGCAGCGTCCTAAAGCGCAGCGGCGCACGGCCAGGGCATTGCATGCCGAGTTGAAGCGACAAGGCTATGAC
GGCGCCTACAGCCGCGTCACCGATTTACTGCGCGCTTGGCGACAGGCCGATGGCACGAGCGCTGTGCACGCCTTCGTGCCCTTGACGTTTGCGCTGGGCG
AAGCCTTCCAGTTCGACTGGAGTGAAGAGAGCATGGTGGTGGGCGGCGTGCCGTACCGCGTGCAGGTTGCCCACGTCAAGCTGTGCGCCAGCCGTGCCTT
CTGGCTGGGGGCCTATCCCAGCCAAGGTCACGAGATGCTGTTTGACGCCCATACCCAGGCGTTTGCCGCCTTCGGCGGAGTGCCGCATCGCGGCATCTAT
GACAACATGAAGACAGCCGTCGACAAAGTGCACCCGCGCAAGAAGCGCGACGTCAACGCGCGCTTTGCGGCGATGTGCAGCCACTACCTGTTCGACCCCG
ACTTCTGCAACGTCGCTTCCGGTTGGGAGAAGGGGGTGGTGGAGAAGAACGTCCAGGACAGCAGGCGACGTGTGTGGATTGAGGCCCTGTCGACGCCCTG
GCGCTCCTTTGCCGAACTCAATGCCTGGCTGGCCATGCGCTGCCGTGGCTTGTGGCAGGAGATCTTCCATCCCGAGTTCAGCCAGTTCACCGTGGCCGAG
ATGCTCGAGCACGAGCAGCCGCACCTCATGCCCATGCCCACAGCGTTCGACGGCTATGTGGACAACACGGTCAAGGTCAGCAGCACCTGTCTGGTGGCCA
TGGCTGGCAATCGTTACTCCGTGCCCTGTGAACTCGCCGGGCGGCGGGTGAGCACCCGGGTGTATCCCACCGAGGTGGTCGTGGTGCATGACGGCGTGTG
TGTGGCCCGCCATGCGCGGCTGGCCAACCGGGGACAGACCACCTACGACTGGCAGCACTATGTGCCGCTGATTCAACGCAAACCCGGGGCGTTGCGCAAC
GGCGCGCCGTTTGCCGATCTGCCCCAGCCCTTGCAGCAACTGCGCCAGGCGCTGCTGCGGCAAGACGGGGGCGACCGGCTCATGGCCCAGGTGCTGGCGC
TGGTGCCCGCATCCGGGCTGGAGGCGGTCCTGGTGGCCGCTGCGCTGGTGCTGGAAGCCACGGCCCCGTCCGGGCGCATCAGCGTGGAGCATGTGGTCAA
CGTGATGGGGCGCTTGCAGACCGGCCCCCAGCCCGCCCAAGTGACCACGGCCTTGACGATGGCCGATCCACCCCGCGCCGACACGGCCCGCTATGACCGC
CTGCGGGTGACTGACGAGGAGCGAGATCATGCGTGAGGTCATTGCGGAACTCAAGGCGTTGCGGCTGCACGGCATGGCCGGCGCCTGGGCCGATTTGCAA
GGTCTGGGGACGAACGCCAGGCTGGATGCCGCGCAGTGGCTCGTCGAGCATTTGCTGCAGGCCGAGCAGGAAGATCGCGCCGTGCGCTCGGTACGCCATC
AAATCCTCTCGGCCCGCTTCCCGGTGCACCGCGATCTAGCGGGGTTTGACTTTGATGCCTCAAGGGTTGATCGCACGCTGGTGGGGCAACTCGCCAGCAT
GGCCTTTACCGAAGCCGCGCACAACGTCGTGCTGGTGGGCGGGCCCGGCACGGGAAAGAGCCATCTGGGCACGGCCATCGGCGTGGCGGGCATCACGCAG
CACGGCAAGCGGGTGCGGTTTTACTCCACCGTCGATCTGGTCAACGCGCTGGAGCAGGAGAAGGCGCAGGGCAAAGCCGGGCGGATTGCGGCAAGCCTCT
TGCGTATGGACTTGGTCATTCTCGATGAGCTGGGGTATCTGCCCTTCAGTCAGGCGGGCGGGGCTTTGTTGTTCCATCTGCTGTCCAAGCTCTACGAGCA
CACCAGCGTGCTGATCACGACCAATCTGGCCTTCGGCGAGTGGTCCAGCGTGTTCATCGATGCGAAGATGACCACCGCCTTGCTCGACCGGCTCACACAC
CACTGCCACATTCTGGAAACCGGGAACGAGAGCTACCGCTTCCGTCACAGCACGGAAACCGCCAAGACCCGCATCAAGGCGCGGGAGCAAAGGCGTTCGG
GCACAGCACAGGCACCCCAGCCCGCTGAGCCCGAGACACCGCTTTGACCCCCACAAGCCCTTGGGGCAAGCCGCTCTGGGCTACGCCCGACGCAGCTTGC
CCCAAGGATCCAAACCCACCCACCAGGAGCCAACCCCACGCAAAAACCGTAGACTTATCCACACCCGACTGCGACGCAGTCGGCCTTAGACCCCGGGTCA
AAATTGAATCGGCACGGTGGGTCAAAATTCCATCGGCACGAACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1521 bp | 506 aa | 116 | 1636 | + | No |
Chemistry : DDE
ORF sequence :
MDMIGKIRRMHFRQNKSVREIARSTGLSRNTVRTWLRQPGDVVPRYAARRTQPSRKLAPYVEWLRQAVAIDAQRPKAQRRTARALHAELKRQGYDGAYSR
VTDLLRAWRQADGTSAVHAFVPLTFALGEAFQFDWSEESMVVGGVPYRVQVAHVKLCASRAFWLGAYPSQGHEMLFDAHTQAFAAFGGVPHRGIYDNMKT
AVDKVHPRKKRDVNARFAAMCSHYLFDPDFCNVASGWEKGVVEKNVQDSRRRVWIEALSTPWRSFAELNAWLAMRCRGLWQEIFHPEFSQFTVAEMLEHE
QPHLMPMPTAFDGYVDNTVKVSSTCLVAMAGNRYSVPCELAGRRVSTRVYPTEVVVVHDGVCVARHARLANRGQTTYDWQHYVPLIQRKPGALRNGAPFA
DLPQPLQQLRQALLRQDGGDRLMAQVLALVPASGLEAVLVAAALVLEATAPSGRISVEHVVNVMGRLQTGPQPAQVTTALTMADPPRADTARYDRLRVTD
EERDHA
VTDLLRAWRQADGTSAVHAFVPLTFALGEAFQFDWSEESMVVGGVPYRVQVAHVKLCASRAFWLGAYPSQGHEMLFDAHTQAFAAFGGVPHRGIYDNMKT
AVDKVHPRKKRDVNARFAAMCSHYLFDPDFCNVASGWEKGVVEKNVQDSRRRVWIEALSTPWRSFAELNAWLAMRCRGLWQEIFHPEFSQFTVAEMLEHE
QPHLMPMPTAFDGYVDNTVKVSSTCLVAMAGNRYSVPCELAGRRVSTRVYPTEVVVVHDGVCVARHARLANRGQTTYDWQHYVPLIQRKPGALRNGAPFA
DLPQPLQQLRQALLRQDGGDRLMAQVLALVPASGLEAVLVAAALVLEATAPSGRISVEHVVNVMGRLQTGPQPAQVTTALTMADPPRADTARYDRLRVTD
EERDHA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
819 bp | 272 aa | 1629 | 2447 | + | No |
AG : IS21 helper
ORF sequence :
MREVIAELKALRLHGMAGAWADLQGLGTNARLDAAQWLVEHLLQAEQEDRAVRSVRHQILSARFPVHRDLAGFDFDASRVDRTLVGQLASMAFTEAAHNV
VLVGGPGTGKSHLGTAIGVAGITQHGKRVRFYSTVDLVNALEQEKAQGKAGRIAASLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVLITTNL
AFGEWSSVFIDAKMTTALLDRLTHHCHILETGNESYRFRHSTETAKTRIKAREQRRSGTAQAPQPAEPETPL
VLVGGPGTGKSHLGTAIGVAGITQHGKRVRFYSTVDLVNALEQEKAQGKAGRIAASLLRMDLVILDELGYLPFSQAGGALLFHLLSKLYEHTSVLITTNL
AFGEWSSVFIDAKMTTALLDRLTHHCHILETGNESYRFRHSTETAKTRIKAREQRRSGTAQAPQPAEPETPL
Blast result :
Comments
ISThsp2 is 75% (ORFA) aa similar to ISPst2 and 83% (ORFB) to ISPst3
References