ISGdi15
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus |
DNA section
IS Length : 1602 bp
Ends
IR Length : 10/11
IRL : gtgccagcCGTAATCGGGCCTGAGCGGTCGTCGTCGATTGGCGGTCTCCC
IRR : ---gccctCTTAATCGGGCGGGTTTTTTGGTCAAGTTTTTCATTCTTCGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGCAGAAGAGGGA | TGGATAAAA | 0 |
DNA sequence
GTGCCAGCCGTAATCGGGCCTGAGCGGTCGTCGTCGATTGGCGGTCTCCCGGGCCGGAAAGAAGGTAGAGTTGCCGCGGTGAAACAGCAGCGCGGGAGGC
GTGCGATGGAATTCTTTTGCGGTCTCGATGTGTCGATCGACGAAACGGCGGTCTGTGTGGTGGACGAGCAGGGCACCGTGCATCTGGAAACGACGGTGGC
CACGGACCCGGCTGCGCTCAGGGATGCCGTGAAGCCGTTCCTGCCGCGCCTGCGCCGTATGGGTCACGAGGCAGGTTCCCTGTCGCCCTGGCTGCATCCG
GAGATGCTGGCGCTGGGCCTGCCGGCGGTCTGCCTGGAGACGAAACACGTGCGGGCGGCGATGTCGGCGCAGCGCAACAAGACCGACAAGGCGGACGCGC
TGGGGATCGCGCATATCGTGCGCACCGGCTGGTTCCGGACGGCCCATATCAAGAGCGAAGCAAGCTATCGGCTGCGTCTGATCCTGACCCAGCGCAGCAC
GCTCAAGCGCAAATTCATGGATCTCGAGAATACGATCCGCCATTCGCTCAAGGCGTTCGGTATCCGCCTGGGCACGGTCTCGCGGGCGCGCTTCGACACC
GCCGTTCGCGAGGCCGTGGCGCAGGACGCGCTGACCCGCGATCTCATGGAGGCGATGCTGCGGGCGAAGGCCGTGCTCTGGGAAGAATATACCCGGCTGC
ACAAGCTGGTGGTGCGGATCGTCGCGGGTGACGAGGTGTGCCGGCGGTTCATGGCCATTCCGGGGGTGGGGCCGGTGACCGCGCTTGGCGTGATGACGGC
GATCGACGATCCGTCGCGCTTCCGGCGCTCGCGCGACGTCGCGGCGTATTTCGGCCTGACGTCGCGGCGCTGGCAGTCGGGTACCAGCATCGATGTGCAG
GGACGCATCAGCAAGGCCGGCGATCCGGAGGTGCGGCGGTCCCTCTATGAAGCGGCGTCGGTCCTGCTGACGCGTTTCAAGGGGCGCGACAAGCTGCGGA
CCTGGGGCCTGGAACTGGCGAAACGGTCCTGCCATCGCAAGGCGGCGGTCGCCGTGGCGCGCAAGATGGCCGTGATCATGCATGCCATGTGGCTCGACGG
AACGGTCTATGACGGCGGTCCGGCCGTCGATCCCGAAGAGCGGGCCCGTCATATCGCTTGCAAGAACCGCAAATTGCCGCGGGCGCTCGCGTGAGTGTCC
AGCTGCAAAGGAATGTTCCGCCGCGTGTCGGGATGACCGCGGCGTTCTGAACAGGGAGATCCGCCAAGGCGGATGGGGAAGGGTGCAGTCGAGGACGACG
GGAAGCACGATATCTTGCCTGGAGCACGCGCAGGTGAACGCCTCGTGGGACTCCGCTCGAGTGCCTGTGATGCTGCCCCGTGAATCCGATGGCAAAATGC
GCCACGACGAAAGGCCGGCCGCCCATCCACGGATGGGGCGGCATATCAGTCGTCGCTGAGCGCGGAAGAGTGCACGGCGTGCCACGAACCCTCAGTCAGG
GCCGAGATGCCAGTCCAGGAGCAGAACTGTGATCGTGAAAGGAAGCTAAAGGAAAACGAAGAATGAAAAACTTGACCAAAAAACCCGCCCGATTAAGAGG
GC
GTGCGATGGAATTCTTTTGCGGTCTCGATGTGTCGATCGACGAAACGGCGGTCTGTGTGGTGGACGAGCAGGGCACCGTGCATCTGGAAACGACGGTGGC
CACGGACCCGGCTGCGCTCAGGGATGCCGTGAAGCCGTTCCTGCCGCGCCTGCGCCGTATGGGTCACGAGGCAGGTTCCCTGTCGCCCTGGCTGCATCCG
GAGATGCTGGCGCTGGGCCTGCCGGCGGTCTGCCTGGAGACGAAACACGTGCGGGCGGCGATGTCGGCGCAGCGCAACAAGACCGACAAGGCGGACGCGC
TGGGGATCGCGCATATCGTGCGCACCGGCTGGTTCCGGACGGCCCATATCAAGAGCGAAGCAAGCTATCGGCTGCGTCTGATCCTGACCCAGCGCAGCAC
GCTCAAGCGCAAATTCATGGATCTCGAGAATACGATCCGCCATTCGCTCAAGGCGTTCGGTATCCGCCTGGGCACGGTCTCGCGGGCGCGCTTCGACACC
GCCGTTCGCGAGGCCGTGGCGCAGGACGCGCTGACCCGCGATCTCATGGAGGCGATGCTGCGGGCGAAGGCCGTGCTCTGGGAAGAATATACCCGGCTGC
ACAAGCTGGTGGTGCGGATCGTCGCGGGTGACGAGGTGTGCCGGCGGTTCATGGCCATTCCGGGGGTGGGGCCGGTGACCGCGCTTGGCGTGATGACGGC
GATCGACGATCCGTCGCGCTTCCGGCGCTCGCGCGACGTCGCGGCGTATTTCGGCCTGACGTCGCGGCGCTGGCAGTCGGGTACCAGCATCGATGTGCAG
GGACGCATCAGCAAGGCCGGCGATCCGGAGGTGCGGCGGTCCCTCTATGAAGCGGCGTCGGTCCTGCTGACGCGTTTCAAGGGGCGCGACAAGCTGCGGA
CCTGGGGCCTGGAACTGGCGAAACGGTCCTGCCATCGCAAGGCGGCGGTCGCCGTGGCGCGCAAGATGGCCGTGATCATGCATGCCATGTGGCTCGACGG
AACGGTCTATGACGGCGGTCCGGCCGTCGATCCCGAAGAGCGGGCCCGTCATATCGCTTGCAAGAACCGCAAATTGCCGCGGGCGCTCGCGTGAGTGTCC
AGCTGCAAAGGAATGTTCCGCCGCGTGTCGGGATGACCGCGGCGTTCTGAACAGGGAGATCCGCCAAGGCGGATGGGGAAGGGTGCAGTCGAGGACGACG
GGAAGCACGATATCTTGCCTGGAGCACGCGCAGGTGAACGCCTCGTGGGACTCCGCTCGAGTGCCTGTGATGCTGCCCCGTGAATCCGATGGCAAAATGC
GCCACGACGAAAGGCCGGCCGCCCATCCACGGATGGGGCGGCATATCAGTCGTCGCTGAGCGCGGAAGAGTGCACGGCGTGCCACGAACCCTCAGTCAGG
GCCGAGATGCCAGTCCAGGAGCAGAACTGTGATCGTGAAAGGAAGCTAAAGGAAAACGAAGAATGAAAAACTTGACCAAAAAACCCGCCCGATTAAGAGG
GC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1089 bp | 362 aa | 106 | 1194 | + | No |
Chemistry : DEDD
ORF sequence :
MEFFCGLDVSIDETAVCVVDEQGTVHLETTVATDPAALRDAVKPFLPRLRRMGHEAGSLSPWLHPEMLALGLPAVCLETKHVRAAMSAQRNKTDKADALG
IAHIVRTGWFRTAHIKSEASYRLRLILTQRSTLKRKFMDLENTIRHSLKAFGIRLGTVSRARFDTAVREAVAQDALTRDLMEAMLRAKAVLWEEYTRLHK
LVVRIVAGDEVCRRFMAIPGVGPVTALGVMTAIDDPSRFRRSRDVAAYFGLTSRRWQSGTSIDVQGRISKAGDPEVRRSLYEAASVLLTRFKGRDKLRTW
GLELAKRSCHRKAAVAVARKMAVIMHAMWLDGTVYDGGPAVDPEERARHIACKNRKLPRALA
IAHIVRTGWFRTAHIKSEASYRLRLILTQRSTLKRKFMDLENTIRHSLKAFGIRLGTVSRARFDTAVREAVAQDALTRDLMEAMLRAKAVLWEEYTRLHK
LVVRIVAGDEVCRRFMAIPGVGPVTALGVMTAIDDPSRFRRSRDVAAYFGLTSRRWQSGTSIDVQGRISKAGDPEVRRSLYEAASVLLTRFKGRDKLRTW
GLELAKRSCHRKAAVAVARKMAVIMHAMWLDGTVYDGGPAVDPEERARHIACKNRKLPRALA
Blast result :
Comments
ISGdi15 is 42% aa similar to ISEch3.
References
1] Miriam Land (2008) Direct submission.