ISGdi15

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus
DNA section
IS Length : 1602 bp

Ends


IR Length : 10/11

IRL : gtgccagcCGTAATCGGGCCTGAGCGGTCGTCGTCGATTGGCGGTCTCCC
IRR : ---gccctCTTAATCGGGCGGGTTTTTTGGTCAAGTTTTTCATTCTTCGT

Insertion site


Left flankDirect repeatRight flankDR Length
GGGCAGAAGAGGGATGGATAAAA0

DNA sequence

GTGCCAGCCGTAATCGGGCCTGAGCGGTCGTCGTCGATTGGCGGTCTCCCGGGCCGGAAAGAAGGTAGAGTTGCCGCGGTGAAACAGCAGCGCGGGAGGC
GTGCGATGGAATTCTTTTGCGGTCTCGATGTGTCGATCGACGAAACGGCGGTCTGTGTGGTGGACGAGCAGGGCACCGTGCATCTGGAAACGACGGTGGC
CACGGACCCGGCTGCGCTCAGGGATGCCGTGAAGCCGTTCCTGCCGCGCCTGCGCCGTATGGGTCACGAGGCAGGTTCCCTGTCGCCCTGGCTGCATCCG
GAGATGCTGGCGCTGGGCCTGCCGGCGGTCTGCCTGGAGACGAAACACGTGCGGGCGGCGATGTCGGCGCAGCGCAACAAGACCGACAAGGCGGACGCGC
TGGGGATCGCGCATATCGTGCGCACCGGCTGGTTCCGGACGGCCCATATCAAGAGCGAAGCAAGCTATCGGCTGCGTCTGATCCTGACCCAGCGCAGCAC
GCTCAAGCGCAAATTCATGGATCTCGAGAATACGATCCGCCATTCGCTCAAGGCGTTCGGTATCCGCCTGGGCACGGTCTCGCGGGCGCGCTTCGACACC
GCCGTTCGCGAGGCCGTGGCGCAGGACGCGCTGACCCGCGATCTCATGGAGGCGATGCTGCGGGCGAAGGCCGTGCTCTGGGAAGAATATACCCGGCTGC
ACAAGCTGGTGGTGCGGATCGTCGCGGGTGACGAGGTGTGCCGGCGGTTCATGGCCATTCCGGGGGTGGGGCCGGTGACCGCGCTTGGCGTGATGACGGC
GATCGACGATCCGTCGCGCTTCCGGCGCTCGCGCGACGTCGCGGCGTATTTCGGCCTGACGTCGCGGCGCTGGCAGTCGGGTACCAGCATCGATGTGCAG
GGACGCATCAGCAAGGCCGGCGATCCGGAGGTGCGGCGGTCCCTCTATGAAGCGGCGTCGGTCCTGCTGACGCGTTTCAAGGGGCGCGACAAGCTGCGGA
CCTGGGGCCTGGAACTGGCGAAACGGTCCTGCCATCGCAAGGCGGCGGTCGCCGTGGCGCGCAAGATGGCCGTGATCATGCATGCCATGTGGCTCGACGG
AACGGTCTATGACGGCGGTCCGGCCGTCGATCCCGAAGAGCGGGCCCGTCATATCGCTTGCAAGAACCGCAAATTGCCGCGGGCGCTCGCGTGAGTGTCC
AGCTGCAAAGGAATGTTCCGCCGCGTGTCGGGATGACCGCGGCGTTCTGAACAGGGAGATCCGCCAAGGCGGATGGGGAAGGGTGCAGTCGAGGACGACG
GGAAGCACGATATCTTGCCTGGAGCACGCGCAGGTGAACGCCTCGTGGGACTCCGCTCGAGTGCCTGTGATGCTGCCCCGTGAATCCGATGGCAAAATGC
GCCACGACGAAAGGCCGGCCGCCCATCCACGGATGGGGCGGCATATCAGTCGTCGCTGAGCGCGGAAGAGTGCACGGCGTGCCACGAACCCTCAGTCAGG
GCCGAGATGCCAGTCCAGGAGCAGAACTGTGATCGTGAAAGGAAGCTAAAGGAAAACGAAGAATGAAAAACTTGACCAAAAAACCCGCCCGATTAAGAGG
GC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1089 bp362 aa1061194+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MEFFCGLDVSIDETAVCVVDEQGTVHLETTVATDPAALRDAVKPFLPRLRRMGHEAGSLSPWLHPEMLALGLPAVCLETKHVRAAMSAQRNKTDKADALG
IAHIVRTGWFRTAHIKSEASYRLRLILTQRSTLKRKFMDLENTIRHSLKAFGIRLGTVSRARFDTAVREAVAQDALTRDLMEAMLRAKAVLWEEYTRLHK
LVVRIVAGDEVCRRFMAIPGVGPVTALGVMTAIDDPSRFRRSRDVAAYFGLTSRRWQSGTSIDVQGRISKAGDPEVRRSLYEAASVLLTRFKGRDKLRTW
GLELAKRSCHRKAAVAVARKMAVIMHAMWLDGTVYDGGPAVDPEERARHIACKNRKLPRALA

 

Blast result :
Comments
ISGdi15 is 42% aa similar to ISEch3.
References
1] Miriam Land (2008) Direct submission.