ISGdi10

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Gluconacetobacter diazotrophicus
Gluconacetobacter diazotrophicus PAl 5
DNA section
IS Length : 1229 bp

Ends


IR Length : 24/28

IRL : TGTAGAAGTCTCGACTAAATCTGACGGATGGTGTCTGCTGAAGCTCAACC
IRR : TGTAGAAGTTTGCACTTAATCTGACGGACGGCTTGAAGTGGCCGGCGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
TTCACGGCACATCAAGTTGAGATGCCATCGTTG7
CTTGGAAGAATCCCTGCCACTCCTCGCGCCTT8
ACCTCGCGCATATCCGTAGTGCGGGGGCGACCG7
CCTTGCGGACATCCTTGATTTCGATGATCGGCG7

DNA sequence

TGTAGAAGTCTCGACTAAATCTGACGGATGGTGTCTGCTGAAGCTCAACCAGGGCTGCGGCGGGGGCGGAGTGGCCGGGCGACGCAGCCCCCGCCGCAGC
CATCGGAGGATATCCTCATGACCCGTGACCAGAAGATCATCCGCGCCAAAGTTGGCCTGCTGGAACTATCGAAGCAACTGGGCAACGTCTCCCAGGCCTG
CAAGATGATGGGGTATTCGCGCGACAGCTTCTACCGCTTCAAGGAGCTCTACGACAAAGGCGGCGAAATCGCGCTCCAGGAACTCTCCCGCCGCAAACCC
TTGCTGAAAAACCGCGTCGAGCCGGCGGTTGAGGAAGCAGTGGTCGCGATCGCCATCGAACAACCGGCCTGGGGCCAGGCCCGCGTGGCCAACGAACTGC
TCAAGCGCGGCGTCACCGTCTCTCCTTTCGGGGTGCGCAGCATCTGGCTGCGCCACGACCTCGCTACCATGAAGCTCCGCCTCAAGGCGCTCGAAGCCAA
GATGGCCCAGGAACGGCTGATCCTCACCGAAAGCCAGCTTGCGGCCCTGGAGAAGGCCAAGGCCGACAAGGAGGCCTGGGGCGAGTTCGAGACCGAATGT
CCCGGCTATTGCGGCGCCCAGGATACCTTCTATGTCGGCACCCTGAAGGGCGTCGGTCGCGTCTACCAGCAGACCTTCGTCGATACCTACAGCAAGGTCG
GCTTCGCCAAGCTCTATGACCGCAAGACCCCGGTTACCGCTGCCGACCTGCTCAACGACCGCGTCATCCCCTTCTTCGAGCTGCACGATCTCCCGCTCCA
GCGCGTGCTGACCGACCGGGGCACCGAATTCTGCGGCTCTCATGACCGCCATGAATACGAACTCTATCTGGCGGTGGAGAACATCGACCATACCCGCACC
AAGGCGCGCAGCCCGCAGACCAACGGCATCGTCGAGCGCTTCCACAAGACCATGCTCGACGAGTTCTATCGTGTCACTTTTCGCCGCAAGATCTACGACA
GCATCCACGAACTCCAGGCAGACCTCGACGAATGGATGGATGACTTCAACCGCAATCGCACCCACCAGGGACGATACTGCTTCGGCAAAACCCCGATGCA
AACCTTCCTTGACGCAGCCCACCACGCCCGCGAAAAAGATATCGGGCGCCACGTCGAACACCACATGAACGCGTAGCATCCACGCCGGCCACTTCAAGCC
GTCCGTCAGATTAAGTGCAAACTTCTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1059 bp352 aa1181176+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTRDQKIIRAKVGLLELSKQLGNVSQACKMMGYSRDSFYRFKELYDKGGEIALQELSRRKPLLKNRVEPAVEEAVVAIAIEQPAWGQARVANELLKRGVT
VSPFGVRSIWLRHDLATMKLRLKALEAKMAQERLILTESQLAALEKAKADKEAWGEFETECPGYCGAQDTFYVGTLKGVGRVYQQTFVDTYSKVGFAKLY
DRKTPVTAADLLNDRVIPFFELHDLPLQRVLTDRGTEFCGSHDRHEYELYLAVENIDHTRTKARSPQTNGIVERFHKTMLDEFYRVTFRRKIYDSIHELQ
ADLDEWMDDFNRNRTHQGRYCFGKTPMQTFLDAAHHAREKDIGRHVEHHMNA

 

Blast result :
Comments
ISGdi10 is 79% aa similar to ISSde2.
References
1] Miriam Land (2008) Direct submission.