ISGdi10
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Gluconacetobacter diazotrophicus | Gluconacetobacter diazotrophicus PAl 5 |
DNA section
IS Length : 1229 bp
Ends
IR Length : 24/28
IRL : TGTAGAAGTCTCGACTAAATCTGACGGATGGTGTCTGCTGAAGCTCAACC
IRR : TGTAGAAGTTTGCACTTAATCTGACGGACGGCTTGAAGTGGCCGGCGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCACGGCACATC | AAGTTGA | GATGCCATCGTTG | 7 |
CTTGGAAGAATC | CCTGCCAC | TCCTCGCGCCTT | 8 |
ACCTCGCGCATAT | CCGTAGT | GCGGGGGCGACCG | 7 |
CCTTGCGGACATC | CTTGATT | TCGATGATCGGCG | 7 |
DNA sequence
TGTAGAAGTCTCGACTAAATCTGACGGATGGTGTCTGCTGAAGCTCAACCAGGGCTGCGGCGGGGGCGGAGTGGCCGGGCGACGCAGCCCCCGCCGCAGC
CATCGGAGGATATCCTCATGACCCGTGACCAGAAGATCATCCGCGCCAAAGTTGGCCTGCTGGAACTATCGAAGCAACTGGGCAACGTCTCCCAGGCCTG
CAAGATGATGGGGTATTCGCGCGACAGCTTCTACCGCTTCAAGGAGCTCTACGACAAAGGCGGCGAAATCGCGCTCCAGGAACTCTCCCGCCGCAAACCC
TTGCTGAAAAACCGCGTCGAGCCGGCGGTTGAGGAAGCAGTGGTCGCGATCGCCATCGAACAACCGGCCTGGGGCCAGGCCCGCGTGGCCAACGAACTGC
TCAAGCGCGGCGTCACCGTCTCTCCTTTCGGGGTGCGCAGCATCTGGCTGCGCCACGACCTCGCTACCATGAAGCTCCGCCTCAAGGCGCTCGAAGCCAA
GATGGCCCAGGAACGGCTGATCCTCACCGAAAGCCAGCTTGCGGCCCTGGAGAAGGCCAAGGCCGACAAGGAGGCCTGGGGCGAGTTCGAGACCGAATGT
CCCGGCTATTGCGGCGCCCAGGATACCTTCTATGTCGGCACCCTGAAGGGCGTCGGTCGCGTCTACCAGCAGACCTTCGTCGATACCTACAGCAAGGTCG
GCTTCGCCAAGCTCTATGACCGCAAGACCCCGGTTACCGCTGCCGACCTGCTCAACGACCGCGTCATCCCCTTCTTCGAGCTGCACGATCTCCCGCTCCA
GCGCGTGCTGACCGACCGGGGCACCGAATTCTGCGGCTCTCATGACCGCCATGAATACGAACTCTATCTGGCGGTGGAGAACATCGACCATACCCGCACC
AAGGCGCGCAGCCCGCAGACCAACGGCATCGTCGAGCGCTTCCACAAGACCATGCTCGACGAGTTCTATCGTGTCACTTTTCGCCGCAAGATCTACGACA
GCATCCACGAACTCCAGGCAGACCTCGACGAATGGATGGATGACTTCAACCGCAATCGCACCCACCAGGGACGATACTGCTTCGGCAAAACCCCGATGCA
AACCTTCCTTGACGCAGCCCACCACGCCCGCGAAAAAGATATCGGGCGCCACGTCGAACACCACATGAACGCGTAGCATCCACGCCGGCCACTTCAAGCC
GTCCGTCAGATTAAGTGCAAACTTCTACA
CATCGGAGGATATCCTCATGACCCGTGACCAGAAGATCATCCGCGCCAAAGTTGGCCTGCTGGAACTATCGAAGCAACTGGGCAACGTCTCCCAGGCCTG
CAAGATGATGGGGTATTCGCGCGACAGCTTCTACCGCTTCAAGGAGCTCTACGACAAAGGCGGCGAAATCGCGCTCCAGGAACTCTCCCGCCGCAAACCC
TTGCTGAAAAACCGCGTCGAGCCGGCGGTTGAGGAAGCAGTGGTCGCGATCGCCATCGAACAACCGGCCTGGGGCCAGGCCCGCGTGGCCAACGAACTGC
TCAAGCGCGGCGTCACCGTCTCTCCTTTCGGGGTGCGCAGCATCTGGCTGCGCCACGACCTCGCTACCATGAAGCTCCGCCTCAAGGCGCTCGAAGCCAA
GATGGCCCAGGAACGGCTGATCCTCACCGAAAGCCAGCTTGCGGCCCTGGAGAAGGCCAAGGCCGACAAGGAGGCCTGGGGCGAGTTCGAGACCGAATGT
CCCGGCTATTGCGGCGCCCAGGATACCTTCTATGTCGGCACCCTGAAGGGCGTCGGTCGCGTCTACCAGCAGACCTTCGTCGATACCTACAGCAAGGTCG
GCTTCGCCAAGCTCTATGACCGCAAGACCCCGGTTACCGCTGCCGACCTGCTCAACGACCGCGTCATCCCCTTCTTCGAGCTGCACGATCTCCCGCTCCA
GCGCGTGCTGACCGACCGGGGCACCGAATTCTGCGGCTCTCATGACCGCCATGAATACGAACTCTATCTGGCGGTGGAGAACATCGACCATACCCGCACC
AAGGCGCGCAGCCCGCAGACCAACGGCATCGTCGAGCGCTTCCACAAGACCATGCTCGACGAGTTCTATCGTGTCACTTTTCGCCGCAAGATCTACGACA
GCATCCACGAACTCCAGGCAGACCTCGACGAATGGATGGATGACTTCAACCGCAATCGCACCCACCAGGGACGATACTGCTTCGGCAAAACCCCGATGCA
AACCTTCCTTGACGCAGCCCACCACGCCCGCGAAAAAGATATCGGGCGCCACGTCGAACACCACATGAACGCGTAGCATCCACGCCGGCCACTTCAAGCC
GTCCGTCAGATTAAGTGCAAACTTCTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1059 bp | 352 aa | 118 | 1176 | + | No |
Chemistry : DDE
ORF sequence :
MTRDQKIIRAKVGLLELSKQLGNVSQACKMMGYSRDSFYRFKELYDKGGEIALQELSRRKPLLKNRVEPAVEEAVVAIAIEQPAWGQARVANELLKRGVT
VSPFGVRSIWLRHDLATMKLRLKALEAKMAQERLILTESQLAALEKAKADKEAWGEFETECPGYCGAQDTFYVGTLKGVGRVYQQTFVDTYSKVGFAKLY
DRKTPVTAADLLNDRVIPFFELHDLPLQRVLTDRGTEFCGSHDRHEYELYLAVENIDHTRTKARSPQTNGIVERFHKTMLDEFYRVTFRRKIYDSIHELQ
ADLDEWMDDFNRNRTHQGRYCFGKTPMQTFLDAAHHAREKDIGRHVEHHMNA
VSPFGVRSIWLRHDLATMKLRLKALEAKMAQERLILTESQLAALEKAKADKEAWGEFETECPGYCGAQDTFYVGTLKGVGRVYQQTFVDTYSKVGFAKLY
DRKTPVTAADLLNDRVIPFFELHDLPLQRVLTDRGTEFCGSHDRHEYELYLAVENIDHTRTKARSPQTNGIVERFHKTMLDEFYRVTFRRKIYDSIHELQ
ADLDEWMDDFNRNRTHQGRYCFGKTPMQTFLDAAHHAREKDIGRHVEHHMNA
Blast result :
Comments
ISGdi10 is 79% aa similar to ISSde2.
References
1] Miriam Land (2008) Direct submission.