ISSde12
- Family IS91
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_007954 | ND | Shewanella denitrificans | Shewanella denitrificans OS217 |
DNA section
IS Length : 2295 bp
Ends
oriIS : GAAGCCGCTTTGCGGCAGGAAAGATAAAACACCGCCTTACCTCCCCATCCCAAATACTTACTAGACCCTGCCAATTTGGCATTTATCTAGGAGTATTGTC II struct. : No
terIS : ATGGGTTGTTGCATCTTATAAAAAGTGACATAAACCAAACCCACCGACAGCGGCGTAAGTTCTTACGTCGATATTTACTATATAAAGGTATCACTTCTAG II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
CTTGTT GAAC | CAAG CTCGGG |
DNA sequence
GAAGCCGCTTTGCGGCAGGAAAGATAAAACACCGCCTTACCTCCCCATCCCAAATACTTACTAGACCCTGCCAATTTGGCATTTATCTAGGAGTATTGTC
ATGAACCCATCCGAGCAACAACGCTTCGATTGTCTTTATCAACAACATCTTACCAACTTAACCCTGCAAGGCAAGCGCCCTGCTACCATCGATGCCTACA
GTCGGGCTGTTAGGCGTATAGCGGCCTACTTCGACTGCTGCCCCGACAAGCTCACAACTGCTGATTTAAAACGTTACTTCGCCGATTTAATTGCCTCTCA
TTCATGGAGTACCGTGAAACTTGACCGTAATGGTCTGCAATTCTTCTATCGCCATGTGCTCAACCAAGCTTGGCAGTGGCTCAGCATCGTCAAGCCGCCG
CAAGTCAACCATCTGCCCGATATCCTCACCCCCGCTGAAGTGTCTATGGTCATTAGCCTCACTCACAAGTTGCGTTATCAAGTGTGCTTTTTAACCCTTT
ACAGCATGGGATTACGTCTCGGTGAAGCGGTCTCGTTGCAGATTGGCGATATCGACTCACAGTTGATGCAGGTGCATATCCGTGATGCCAAAGGCGGTAA
GGATAGACTGATTCCTTTACCGCAACGCACCTTGCAGGCACTGCGTTATTACTGGCAAACCCATCGCCATCCTCGTTATTTATTTCCGGGTAAGGATGGT
AAGCCAAATTCACTGATGGACCGTGGTGGCATTCAGAAAGCGATGAAAAAAGTGATTAGTGAATGCCATATTCACAAATCCATCAGCCCACATAATTTAC
GTCACAGCTATGCCACTCATCTGCTCGAACAAGGGTTAGATTTACGCTCAGTGCAGCAGTTACTCGGCCACAACAGCCTCAACACCACCGCCCGTTACAC
CCGGCTCACCACCATCACTCGCAAGAACACTGTCGAATCGATTAACCAACTGACGAATAATCTGGTATTGATGTGGGAGTGTGAACAATGAAGTTCATCG
ATATTTTACGTGACCATCTTGATGAGTTTAATGCGCATTATCAAGGGTATATCACCACATCCATGCGCCAAGCCATTCATGCCATGCTCAGTTGCCGCAC
TCATTCCCAAAAAGTCAGCCACTGGGCTTGTCAGGGATGCGCTCATACTGCTGACTTTCCGCTGTCATGCGGCCATCGCAGTTGTCCGCAATGTCAGTAC
AACACCACGAGTGACTGGCTCGCTAAACAGCAGGCTAAGCTACTCCCCGTCAATTACTACATGGTGACTTTTACCTTACCATTTGAGCTTCGAGTCGTGG
CAAAACATCAACCTGAGGTGATGTATCAAGCGATGTTCTCCGTTGCTGCCAGTGTGCTAAAAGAGTTTGCTAAAAACTCGAAGCTACTCGGCGGTGAAAT
TGGTTTTACGGGCGTGCTGCATACTCACAATCGGCGGCGCGACCTGCATCCGCATATTCATTTCATCATCCCTGCAGGTAGCTTCGATAAAGACAGAAAA
CAGTGGCACAAGAGTAAAGGCAAATACCTGTTCAACAACGTTAATCTGGCCTCGGTGTGGCGAGCAAAGTTACTAGAGCAACTGACAAAAAAGTTCAACA
TCAAGCTACCATCAGCCACACCTAAGAAGTGGGTTGTCGACTGCCAGCATGTTGGCAAAGGGCTGCCAGCGCTTAAATACCTATCACGCTATCTCTATCG
CGGCGTACTGCCTGACAAAAGCATCATAGGTACGACCGATGAACAAGTCTGCTTCGAGTATCAAAATAGCCAAACCAAAACCACTGAAATACGCACTTTA
CCTACAGTGAAGTTTCTATGGTTGGTACTACAACATGTATTACCCAAAGGGCTACGGCGAGTCAGAGATTATGGACTGTTGAGCGGTAACTGCAGCAAGC
TCAGGCAACAGATACAGCTCATGCTCGCTGTCGCTGGTGCGGTGTTTCCAATAATATCTGAGCTAAAGCGAACTGTGGCGATACGACTTTGTCCATGTTG
CCATCAGCCTATGTCATTTATCGGAATACATGCACGACCGGCAAGCTTACAAACACCAATAAGCAACACTGCCTAACGCCGCTGTTTAAGCGGTAAAGGT
CATGAGTTTAAGACTTAAGATACAGAAGCCGATGGACAAAAAGGAGGTGATTAAGGAGTTGATATATAAAGTTAATTAATTGGCTATCGATGCCAATGGG
TTGTTGCATCTTATAAAAAGTGACATAAACCAAACCCACCGACAGCGGCGTAAGTTCTTACGTCGATATTTACTATATAAAGGTATCACTTCTAG
ATGAACCCATCCGAGCAACAACGCTTCGATTGTCTTTATCAACAACATCTTACCAACTTAACCCTGCAAGGCAAGCGCCCTGCTACCATCGATGCCTACA
GTCGGGCTGTTAGGCGTATAGCGGCCTACTTCGACTGCTGCCCCGACAAGCTCACAACTGCTGATTTAAAACGTTACTTCGCCGATTTAATTGCCTCTCA
TTCATGGAGTACCGTGAAACTTGACCGTAATGGTCTGCAATTCTTCTATCGCCATGTGCTCAACCAAGCTTGGCAGTGGCTCAGCATCGTCAAGCCGCCG
CAAGTCAACCATCTGCCCGATATCCTCACCCCCGCTGAAGTGTCTATGGTCATTAGCCTCACTCACAAGTTGCGTTATCAAGTGTGCTTTTTAACCCTTT
ACAGCATGGGATTACGTCTCGGTGAAGCGGTCTCGTTGCAGATTGGCGATATCGACTCACAGTTGATGCAGGTGCATATCCGTGATGCCAAAGGCGGTAA
GGATAGACTGATTCCTTTACCGCAACGCACCTTGCAGGCACTGCGTTATTACTGGCAAACCCATCGCCATCCTCGTTATTTATTTCCGGGTAAGGATGGT
AAGCCAAATTCACTGATGGACCGTGGTGGCATTCAGAAAGCGATGAAAAAAGTGATTAGTGAATGCCATATTCACAAATCCATCAGCCCACATAATTTAC
GTCACAGCTATGCCACTCATCTGCTCGAACAAGGGTTAGATTTACGCTCAGTGCAGCAGTTACTCGGCCACAACAGCCTCAACACCACCGCCCGTTACAC
CCGGCTCACCACCATCACTCGCAAGAACACTGTCGAATCGATTAACCAACTGACGAATAATCTGGTATTGATGTGGGAGTGTGAACAATGAAGTTCATCG
ATATTTTACGTGACCATCTTGATGAGTTTAATGCGCATTATCAAGGGTATATCACCACATCCATGCGCCAAGCCATTCATGCCATGCTCAGTTGCCGCAC
TCATTCCCAAAAAGTCAGCCACTGGGCTTGTCAGGGATGCGCTCATACTGCTGACTTTCCGCTGTCATGCGGCCATCGCAGTTGTCCGCAATGTCAGTAC
AACACCACGAGTGACTGGCTCGCTAAACAGCAGGCTAAGCTACTCCCCGTCAATTACTACATGGTGACTTTTACCTTACCATTTGAGCTTCGAGTCGTGG
CAAAACATCAACCTGAGGTGATGTATCAAGCGATGTTCTCCGTTGCTGCCAGTGTGCTAAAAGAGTTTGCTAAAAACTCGAAGCTACTCGGCGGTGAAAT
TGGTTTTACGGGCGTGCTGCATACTCACAATCGGCGGCGCGACCTGCATCCGCATATTCATTTCATCATCCCTGCAGGTAGCTTCGATAAAGACAGAAAA
CAGTGGCACAAGAGTAAAGGCAAATACCTGTTCAACAACGTTAATCTGGCCTCGGTGTGGCGAGCAAAGTTACTAGAGCAACTGACAAAAAAGTTCAACA
TCAAGCTACCATCAGCCACACCTAAGAAGTGGGTTGTCGACTGCCAGCATGTTGGCAAAGGGCTGCCAGCGCTTAAATACCTATCACGCTATCTCTATCG
CGGCGTACTGCCTGACAAAAGCATCATAGGTACGACCGATGAACAAGTCTGCTTCGAGTATCAAAATAGCCAAACCAAAACCACTGAAATACGCACTTTA
CCTACAGTGAAGTTTCTATGGTTGGTACTACAACATGTATTACCCAAAGGGCTACGGCGAGTCAGAGATTATGGACTGTTGAGCGGTAACTGCAGCAAGC
TCAGGCAACAGATACAGCTCATGCTCGCTGTCGCTGGTGCGGTGTTTCCAATAATATCTGAGCTAAAGCGAACTGTGGCGATACGACTTTGTCCATGTTG
CCATCAGCCTATGTCATTTATCGGAATACATGCACGACCGGCAAGCTTACAAACACCAATAAGCAACACTGCCTAACGCCGCTGTTTAAGCGGTAAAGGT
CATGAGTTTAAGACTTAAGATACAGAAGCCGATGGACAAAAAGGAGGTGATTAAGGAGTTGATATATAAAGTTAATTAATTGGCTATCGATGCCAATGGG
TTGTTGCATCTTATAAAAAGTGACATAAACCAAACCCACCGACAGCGGCGTAAGTTCTTACGTCGATATTTACTATATAAAGGTATCACTTCTAG
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
891 bp | 296 aa | 101 | 991 | + | No |
AG : IS91 integrase/resolvase
ORF sequence :
MNPSEQQRFDCLYQQHLTNLTLQGKRPATIDAYSRAVRRIAAYFDCCPDKLTTADLKRYFADLIASHSWSTVKLDRNGLQFFYRHVLNQAWQWLSIVKPP
QVNHLPDILTPAEVSMVISLTHKLRYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALRYYWQTHRHPRYLFPGKDG
KPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTTITRKNTVESINQLTNNLVLMWECEQ
QVNHLPDILTPAEVSMVISLTHKLRYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQVHIRDAKGGKDRLIPLPQRTLQALRYYWQTHRHPRYLFPGKDG
KPNSLMDRGGIQKAMKKVISECHIHKSISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTTITRKNTVESINQLTNNLVLMWECEQ
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1089 bp | 362 aa | 988 | 2076 | + | No |
Chemistry : Y2
ORF sequence :
MKFIDILRDHLDEFNAHYQGYITTSMRQAIHAMLSCRTHSQKVSHWACQGCAHTADFPLSCGHRSCPQCQYNTTSDWLAKQQAKLLPVNYYMVTFTLPFE
LRVVAKHQPEVMYQAMFSVAASVLKEFAKNSKLLGGEIGFTGVLHTHNRRRDLHPHIHFIIPAGSFDKDRKQWHKSKGKYLFNNVNLASVWRAKLLEQLT
KKFNIKLPSATPKKWVVDCQHVGKGLPALKYLSRYLYRGVLPDKSIIGTTDEQVCFEYQNSQTKTTEIRTLPTVKFLWLVLQHVLPKGLRRVRDYGLLSG
NCSKLRQQIQLMLAVAGAVFPIISELKRTVAIRLCPCCHQPMSFIGIHARPASLQTPISNTA
LRVVAKHQPEVMYQAMFSVAASVLKEFAKNSKLLGGEIGFTGVLHTHNRRRDLHPHIHFIIPAGSFDKDRKQWHKSKGKYLFNNVNLASVWRAKLLEQLT
KKFNIKLPSATPKKWVVDCQHVGKGLPALKYLSRYLYRGVLPDKSIIGTTDEQVCFEYQNSQTKTTEIRTLPTVKFLWLVLQHVLPKGLRRVRDYGLLSG
NCSKLRQQIQLMLAVAGAVFPIISELKRTVAIRLCPCCHQPMSFIGIHARPASLQTPISNTA
Blast result :
Comments
There is one copy of ISSde12 encoded in Shewanella denitrificans.
The element encodes both a integrase and transposase.
These proteins have no more than 31% identity with proteins currently in ISfinder.
The element encodes both a integrase and transposase.
These proteins have no more than 31% identity with proteins currently in ISfinder.
References
1] Romine, M. F. (2008) Direct submission.