ISSba16

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009052 ND Shewanella baltica
Shewanella baltica OS155
DNA section
IS Length : 1078 bp

Ends


IR Length : 22/29

IRL : CCAGAATTCAGATAATAACTGCGACACTCTAATCGAGGTGTAGAAGAAGC
IRR : CCCGAATTCAACTCCGAAGTGCGACACTCGACAATTAAGCAGCTAATTGG

Insertion site


Left flankDirect repeatRight flankDR Length
TAACCTGTTAGAAGAAGGTTCAC3
TTGAACGTTCAATTAACAATCAT3
TTTTCCAATAATCTAAGTAGGCT3
CTTTAGCTTAATCAAACTTAAT2
AGAGCCCAATCCAGAAGTGTAA2
TCAGTGCTTATTTAACAAGAGT2
TGTTAGGATAATTAAACCGTTT2
CGCTTGATTGCTCGCCGCGTAA2
CGTCAGATTGCTTATCCATAAA2
TTGAAAGTTATTTTAGTAATGA2
GTGTAGCTTATTAAATCATCAA2
AATCTGCAAGCATAAGGAAAAA2
TAACTCCTTAACTACTGAATTA2
CGAAAGCTTAAGCTACCTAAAA2
AATATACGCAGCTAATATCCAA2
TAAATCGTTATGTTCTCAGGGA2
ACATGGATGATTAAAGCAGCGA2
GGGCAGCTTAGGTTTGTTGAAT2
CAAGAGCTTACGCATTGAAAAA2
AAAGTTGATATCTAAGGTGCTC2
GCCGTACTTAATCATCCAAATG2
GAGGGTAATAGGATTCCTATTA2

DNA sequence

CCAGAATTCAGATAATAACTGCGACACTCTAATCGAGGTGTAGAAGAAGCCAACTGCTGAAAAGTGGTACGCTTTATCTCGCCAAAGTAAAAGAGTATCA
CCATGAATTATCAACAGTTGACCGAAGCAAGACGATACCAGATTTCCGTGCTGTTAGAACAGGGCTTTTCGATAGCACACATAGCTAAATGCATTGATTG
TCATCGCTCTAGTGTCTATAGGGAAGTTAAACGATGCCAAGGGCAATCACGCTATCAGCCTGATATTGCACACAAGCAGGCTGTCACAATGAGGCGTCAG
TCGAGTAAATATGCGATACCCTCACAGCGAATAGAGAGCATCATCCTTTTGCTGCAATTGGATTGGAGCCCGGAGCAAATTTCGCAGGTGTTGCGTCTGG
TGAAGGAGCCCGTCAGTCACGAGTGGATTTATCGCTATATTGCACGCGATAAACGCCGTGGTGGCAAACTTTATCGTCATTTACGTCAAGGACATAAGCG
TTATCGGCGCGGTAAAGTAGAGCAAGCTCCTACCATAAAAAACGCCGTATCCATTGACGACAGACCAGCCATTGTTGATAGCCGAGAGCGATTTGGTGAC
TGGGAAATCGACACCGTATTGGGGCTGCATGGAACGGGTTCGATTGTAACCCTATTAGAGCGTAAGACTCGGTTTTATTTGATAAAGAAAGTCAATTCGA
AGTCAGCGGCAGATGTAACGAAAGCGACGATTGAGTTACTGATGCCCTATAAGGCGCATGTGCTGACAATCACGGCAGATAATGGACGCGAATTTGCTCA
CCACCAAGAGATAGCAGAGGCGCTAGATACACAGGTGTATTTTGCGCACCCTTATCGTTCTTGTGAACGAGGAGCGAATGAAAACGCCAATGGATTACTG
CGGCAGTACGTCAAAAAAGGGGTTGATTTGAGGCTAGTGAGTGATGAATTAATCGAATTTGCTCAGAATAGAATTAACTATCGACCCAAAAAGTGTTTGA
AGTTTAAGCAGCCTGCGGTGGTATTTCACCAATTAGCTGCTTAATTGTCGAGTGTCGCACTTCGGAGTTGAATTCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
942 bp313 aa1031044+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNYQQLTEARRYQISVLLEQGFSIAHIAKCIDCHRSSVYREVKRCQGQSRYQPDIAHKQAVTMRRQSSKYAIPSQRIESIILLLQLDWSPEQISQVLRLV
KEPVSHEWIYRYIARDKRRGGKLYRHLRQGHKRYRRGKVEQAPTIKNAVSIDDRPAIVDSRERFGDWEIDTVLGLHGTGSIVTLLERKTRFYLIKKVNSK
SAADVTKATIELLMPYKAHVLTITADNGREFAHHQEIAEALDTQVYFAHPYRSCERGANENANGLLRQYVKKGVDLRLVSDELIEFAQNRINYRPKKCLK
FKQPAVVFHQLAA

 

Blast result :
Comments
There are 24 copies of ISSba16 encoded in the chromosome of Shewanella baltica OS155; two are truncated. The ISSba16 transposase has 76% identity to that of ISSde3.
References
1] Romine, M. F. (2008) Direct submission.