ISSba16
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009052 | ND | Shewanella baltica | Shewanella baltica OS155 |
DNA section
IS Length : 1078 bp
Ends
IR Length : 22/29
IRL : CCAGAATTCAGATAATAACTGCGACACTCTAATCGAGGTGTAGAAGAAGC
IRR : CCCGAATTCAACTCCGAAGTGCGACACTCGACAATTAAGCAGCTAATTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAACCTGTTA | GAA | GAAGGTTCAC | 3 |
TTGAACGTTC | AAT | TAACAATCAT | 3 |
TTTTCCAATA | ATC | TAAGTAGGCT | 3 |
CTTTAGCTTA | AT | CAAACTTAAT | 2 |
AGAGCCCAAT | CC | AGAAGTGTAA | 2 |
TCAGTGCTTA | TT | TAACAAGAGT | 2 |
TGTTAGGATA | AT | TAAACCGTTT | 2 |
CGCTTGATTG | CT | CGCCGCGTAA | 2 |
CGTCAGATTG | CT | TATCCATAAA | 2 |
TTGAAAGTTA | TT | TTAGTAATGA | 2 |
GTGTAGCTTA | TT | AAATCATCAA | 2 |
AATCTGCAAG | CA | TAAGGAAAAA | 2 |
TAACTCCTTA | AC | TACTGAATTA | 2 |
CGAAAGCTTA | AG | CTACCTAAAA | 2 |
AATATACGCA | GC | TAATATCCAA | 2 |
TAAATCGTTA | TG | TTCTCAGGGA | 2 |
ACATGGATGA | TT | AAAGCAGCGA | 2 |
GGGCAGCTTA | GG | TTTGTTGAAT | 2 |
CAAGAGCTTA | CG | CATTGAAAAA | 2 |
AAAGTTGATA | TC | TAAGGTGCTC | 2 |
GCCGTACTTA | AT | CATCCAAATG | 2 |
GAGGGTAATA | GG | ATTCCTATTA | 2 |
DNA sequence
CCAGAATTCAGATAATAACTGCGACACTCTAATCGAGGTGTAGAAGAAGCCAACTGCTGAAAAGTGGTACGCTTTATCTCGCCAAAGTAAAAGAGTATCA
CCATGAATTATCAACAGTTGACCGAAGCAAGACGATACCAGATTTCCGTGCTGTTAGAACAGGGCTTTTCGATAGCACACATAGCTAAATGCATTGATTG
TCATCGCTCTAGTGTCTATAGGGAAGTTAAACGATGCCAAGGGCAATCACGCTATCAGCCTGATATTGCACACAAGCAGGCTGTCACAATGAGGCGTCAG
TCGAGTAAATATGCGATACCCTCACAGCGAATAGAGAGCATCATCCTTTTGCTGCAATTGGATTGGAGCCCGGAGCAAATTTCGCAGGTGTTGCGTCTGG
TGAAGGAGCCCGTCAGTCACGAGTGGATTTATCGCTATATTGCACGCGATAAACGCCGTGGTGGCAAACTTTATCGTCATTTACGTCAAGGACATAAGCG
TTATCGGCGCGGTAAAGTAGAGCAAGCTCCTACCATAAAAAACGCCGTATCCATTGACGACAGACCAGCCATTGTTGATAGCCGAGAGCGATTTGGTGAC
TGGGAAATCGACACCGTATTGGGGCTGCATGGAACGGGTTCGATTGTAACCCTATTAGAGCGTAAGACTCGGTTTTATTTGATAAAGAAAGTCAATTCGA
AGTCAGCGGCAGATGTAACGAAAGCGACGATTGAGTTACTGATGCCCTATAAGGCGCATGTGCTGACAATCACGGCAGATAATGGACGCGAATTTGCTCA
CCACCAAGAGATAGCAGAGGCGCTAGATACACAGGTGTATTTTGCGCACCCTTATCGTTCTTGTGAACGAGGAGCGAATGAAAACGCCAATGGATTACTG
CGGCAGTACGTCAAAAAAGGGGTTGATTTGAGGCTAGTGAGTGATGAATTAATCGAATTTGCTCAGAATAGAATTAACTATCGACCCAAAAAGTGTTTGA
AGTTTAAGCAGCCTGCGGTGGTATTTCACCAATTAGCTGCTTAATTGTCGAGTGTCGCACTTCGGAGTTGAATTCGGG
CCATGAATTATCAACAGTTGACCGAAGCAAGACGATACCAGATTTCCGTGCTGTTAGAACAGGGCTTTTCGATAGCACACATAGCTAAATGCATTGATTG
TCATCGCTCTAGTGTCTATAGGGAAGTTAAACGATGCCAAGGGCAATCACGCTATCAGCCTGATATTGCACACAAGCAGGCTGTCACAATGAGGCGTCAG
TCGAGTAAATATGCGATACCCTCACAGCGAATAGAGAGCATCATCCTTTTGCTGCAATTGGATTGGAGCCCGGAGCAAATTTCGCAGGTGTTGCGTCTGG
TGAAGGAGCCCGTCAGTCACGAGTGGATTTATCGCTATATTGCACGCGATAAACGCCGTGGTGGCAAACTTTATCGTCATTTACGTCAAGGACATAAGCG
TTATCGGCGCGGTAAAGTAGAGCAAGCTCCTACCATAAAAAACGCCGTATCCATTGACGACAGACCAGCCATTGTTGATAGCCGAGAGCGATTTGGTGAC
TGGGAAATCGACACCGTATTGGGGCTGCATGGAACGGGTTCGATTGTAACCCTATTAGAGCGTAAGACTCGGTTTTATTTGATAAAGAAAGTCAATTCGA
AGTCAGCGGCAGATGTAACGAAAGCGACGATTGAGTTACTGATGCCCTATAAGGCGCATGTGCTGACAATCACGGCAGATAATGGACGCGAATTTGCTCA
CCACCAAGAGATAGCAGAGGCGCTAGATACACAGGTGTATTTTGCGCACCCTTATCGTTCTTGTGAACGAGGAGCGAATGAAAACGCCAATGGATTACTG
CGGCAGTACGTCAAAAAAGGGGTTGATTTGAGGCTAGTGAGTGATGAATTAATCGAATTTGCTCAGAATAGAATTAACTATCGACCCAAAAAGTGTTTGA
AGTTTAAGCAGCCTGCGGTGGTATTTCACCAATTAGCTGCTTAATTGTCGAGTGTCGCACTTCGGAGTTGAATTCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
942 bp | 313 aa | 103 | 1044 | + | No |
Chemistry : DDE
ORF sequence :
MNYQQLTEARRYQISVLLEQGFSIAHIAKCIDCHRSSVYREVKRCQGQSRYQPDIAHKQAVTMRRQSSKYAIPSQRIESIILLLQLDWSPEQISQVLRLV
KEPVSHEWIYRYIARDKRRGGKLYRHLRQGHKRYRRGKVEQAPTIKNAVSIDDRPAIVDSRERFGDWEIDTVLGLHGTGSIVTLLERKTRFYLIKKVNSK
SAADVTKATIELLMPYKAHVLTITADNGREFAHHQEIAEALDTQVYFAHPYRSCERGANENANGLLRQYVKKGVDLRLVSDELIEFAQNRINYRPKKCLK
FKQPAVVFHQLAA
KEPVSHEWIYRYIARDKRRGGKLYRHLRQGHKRYRRGKVEQAPTIKNAVSIDDRPAIVDSRERFGDWEIDTVLGLHGTGSIVTLLERKTRFYLIKKVNSK
SAADVTKATIELLMPYKAHVLTITADNGREFAHHQEIAEALDTQVYFAHPYRSCERGANENANGLLRQYVKKGVDLRLVSDELIEFAQNRINYRPKKCLK
FKQPAVVFHQLAA
Blast result :
Comments
There are 24 copies of ISSba16 encoded in the chromosome of Shewanella baltica OS155; two are truncated. The ISSba16 transposase has 76% identity to that of ISSde3.
References
1] Romine, M. F. (2008) Direct submission.