ISShes15
- Family IS481
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008322 | ND | Shewanella sp. | Shewanella sp. MR7 |
DNA section
IS Length : 1200 bp
Ends
IR Length : 22/26
IRL : TGTATTAGTTCAGACTAGATCTGACACATCATCTTGAAAAGATGAGAGTT
IRR : TGTACTAGCTCAGACCTGATCTGACAGTTGCCCATTTTTTAGGGTGCTAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGACTCGTCC | CATAAAA | AGTGGGGAAT | 7 |
DNA sequence
TGTATTAGTTCAGACTAGATCTGACACATCATCTTGAAAAGATGAGAGTTACCCGTTTTGATAAAGGTGTCGAAACTTAATCAAAGCAAAAAGGTAACTC
TCATGCTTCATACTAACAATCCCATCATTAAACACAAAGCTGGTTTACTCAATCTCGCTGAAGAATTGGGAAACGTGTCTAGAGCTTGTAAAGTCATGGG
GCTTTCCCGTGATACTTTCTATCGCTATCAAGAGCTGGTTGAAAACGGCGGTGTTGAGTCGTTGATTAATCAGTCCAGAAGAACACCTAACCTCAAGAAT
CGTGTTGATGATGTAACTGAAAATGCCGTCTTAACACATGCTATCGCATTTCCTGCCCATGGGCAGTCTCGCTCTAGTAACGAGCTTCGAAAACAAGGGA
TATTTGTCTCCGCCAGTGGCGTGCGCTCCATTTGGTTACGGCATGGCTTAGAGAACTTCAAAAAGCGATTAAAAGCCCTCGAAGCCAAAGTCGAGCTAGA
AGGGATAATCCTTTCGGATGAACAAGTTGCCGCCCTTGAGCGTAAGCAGCAAGACGATGAAGCATGTGGTGAAATTGAAACGCATCATCCAGGTTATCTC
GGCTCACAAGATACCTTTTACGTTGGTAGTCTTAAGGGCGTAGGCAGGATTTATCAGCAAACCTTTGTCGATACTTACAGCAAAGTTGCTTTCGCGAAAC
TGTATACCACGAAAACCCCAATCACCTCGGCCGATTTACTCAACGACAGAGTATTACCGTTCTTTGAAACACAGGCGCTGCCCATGTTGCGCATTTTAAC
TGACAGAGGAACCGAATACTGTGGCAAAGTGGAACAGCACGACTATCAGCTGTATTTAGCAATTAACGATATAGAACACACTAAGACGAAGGCGCGACAC
CCGCAAACGAATGGGATCTGCGAACGGTTCCATAAAACTATTTTGAATGAGTTTTATCAGGTTACTTTCCGAAAAAAACTGTACGCTAACATGGAGGAAC
TACAAAAAGATCTGGACGAATGGCTGGCTTATTACAACAATGAACGAACCCATCAAGGTAAAATGTGCTGCGGCAGAACACCACTGGCCACATTAATAGA
TGGGAAACGGTTTTGGGCTGAAAAGAATTTAGCTCAAATCTAAGCTGACAGTAGCACCCTAAAAAATGGGCAACTGTCAGATCAGGTCTGAGCTAGTACA
TCATGCTTCATACTAACAATCCCATCATTAAACACAAAGCTGGTTTACTCAATCTCGCTGAAGAATTGGGAAACGTGTCTAGAGCTTGTAAAGTCATGGG
GCTTTCCCGTGATACTTTCTATCGCTATCAAGAGCTGGTTGAAAACGGCGGTGTTGAGTCGTTGATTAATCAGTCCAGAAGAACACCTAACCTCAAGAAT
CGTGTTGATGATGTAACTGAAAATGCCGTCTTAACACATGCTATCGCATTTCCTGCCCATGGGCAGTCTCGCTCTAGTAACGAGCTTCGAAAACAAGGGA
TATTTGTCTCCGCCAGTGGCGTGCGCTCCATTTGGTTACGGCATGGCTTAGAGAACTTCAAAAAGCGATTAAAAGCCCTCGAAGCCAAAGTCGAGCTAGA
AGGGATAATCCTTTCGGATGAACAAGTTGCCGCCCTTGAGCGTAAGCAGCAAGACGATGAAGCATGTGGTGAAATTGAAACGCATCATCCAGGTTATCTC
GGCTCACAAGATACCTTTTACGTTGGTAGTCTTAAGGGCGTAGGCAGGATTTATCAGCAAACCTTTGTCGATACTTACAGCAAAGTTGCTTTCGCGAAAC
TGTATACCACGAAAACCCCAATCACCTCGGCCGATTTACTCAACGACAGAGTATTACCGTTCTTTGAAACACAGGCGCTGCCCATGTTGCGCATTTTAAC
TGACAGAGGAACCGAATACTGTGGCAAAGTGGAACAGCACGACTATCAGCTGTATTTAGCAATTAACGATATAGAACACACTAAGACGAAGGCGCGACAC
CCGCAAACGAATGGGATCTGCGAACGGTTCCATAAAACTATTTTGAATGAGTTTTATCAGGTTACTTTCCGAAAAAAACTGTACGCTAACATGGAGGAAC
TACAAAAAGATCTGGACGAATGGCTGGCTTATTACAACAATGAACGAACCCATCAAGGTAAAATGTGCTGCGGCAGAACACCACTGGCCACATTAATAGA
TGGGAAACGGTTTTGGGCTGAAAAGAATTTAGCTCAAATCTAAGCTGACAGTAGCACCCTAAAAAATGGGCAACTGTCAGATCAGGTCTGAGCTAGTACA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1041 bp | 346 aa | 103 | 1143 | + | No |
Chemistry : DDE
ORF sequence :
MLHTNNPIIKHKAGLLNLAEELGNVSRACKVMGLSRDTFYRYQELVENGGVESLINQSRRTPNLKNRVDDVTENAVLTHAIAFPAHGQSRSSNELRKQGI
FVSASGVRSIWLRHGLENFKKRLKALEAKVELEGIILSDEQVAALERKQQDDEACGEIETHHPGYLGSQDTFYVGSLKGVGRIYQQTFVDTYSKVAFAKL
YTTKTPITSADLLNDRVLPFFETQALPMLRILTDRGTEYCGKVEQHDYQLYLAINDIEHTKTKARHPQTNGICERFHKTILNEFYQVTFRKKLYANMEEL
QKDLDEWLAYYNNERTHQGKMCCGRTPLATLIDGKRFWAEKNLAQI
FVSASGVRSIWLRHGLENFKKRLKALEAKVELEGIILSDEQVAALERKQQDDEACGEIETHHPGYLGSQDTFYVGSLKGVGRIYQQTFVDTYSKVAFAKL
YTTKTPITSADLLNDRVLPFFETQALPMLRILTDRGTEYCGKVEQHDYQLYLAINDIEHTKTKARHPQTNGICERFHKTILNEFYQVTFRKKLYANMEEL
QKDLDEWLAYYNNERTHQGKMCCGRTPLATLIDGKRFWAEKNLAQI
Blast result :
Comments
There is one copy of ISShes15 in the chromosome of Shewanella sp. MR-7. The ISShes15 transposase has 84% identity to that of ISSde2.
References
1] Romine, M. F. (2008). Direct submission.