ISShes15

  • Family IS481
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008322 ND Shewanella sp.
Shewanella sp. MR7
DNA section
IS Length : 1200 bp

Ends


IR Length : 22/26

IRL : TGTATTAGTTCAGACTAGATCTGACACATCATCTTGAAAAGATGAGAGTT
IRR : TGTACTAGCTCAGACCTGATCTGACAGTTGCCCATTTTTTAGGGTGCTAC

Insertion site


Left flankDirect repeatRight flankDR Length
TGACTCGTCCCATAAAAAGTGGGGAAT7

DNA sequence

TGTATTAGTTCAGACTAGATCTGACACATCATCTTGAAAAGATGAGAGTTACCCGTTTTGATAAAGGTGTCGAAACTTAATCAAAGCAAAAAGGTAACTC
TCATGCTTCATACTAACAATCCCATCATTAAACACAAAGCTGGTTTACTCAATCTCGCTGAAGAATTGGGAAACGTGTCTAGAGCTTGTAAAGTCATGGG
GCTTTCCCGTGATACTTTCTATCGCTATCAAGAGCTGGTTGAAAACGGCGGTGTTGAGTCGTTGATTAATCAGTCCAGAAGAACACCTAACCTCAAGAAT
CGTGTTGATGATGTAACTGAAAATGCCGTCTTAACACATGCTATCGCATTTCCTGCCCATGGGCAGTCTCGCTCTAGTAACGAGCTTCGAAAACAAGGGA
TATTTGTCTCCGCCAGTGGCGTGCGCTCCATTTGGTTACGGCATGGCTTAGAGAACTTCAAAAAGCGATTAAAAGCCCTCGAAGCCAAAGTCGAGCTAGA
AGGGATAATCCTTTCGGATGAACAAGTTGCCGCCCTTGAGCGTAAGCAGCAAGACGATGAAGCATGTGGTGAAATTGAAACGCATCATCCAGGTTATCTC
GGCTCACAAGATACCTTTTACGTTGGTAGTCTTAAGGGCGTAGGCAGGATTTATCAGCAAACCTTTGTCGATACTTACAGCAAAGTTGCTTTCGCGAAAC
TGTATACCACGAAAACCCCAATCACCTCGGCCGATTTACTCAACGACAGAGTATTACCGTTCTTTGAAACACAGGCGCTGCCCATGTTGCGCATTTTAAC
TGACAGAGGAACCGAATACTGTGGCAAAGTGGAACAGCACGACTATCAGCTGTATTTAGCAATTAACGATATAGAACACACTAAGACGAAGGCGCGACAC
CCGCAAACGAATGGGATCTGCGAACGGTTCCATAAAACTATTTTGAATGAGTTTTATCAGGTTACTTTCCGAAAAAAACTGTACGCTAACATGGAGGAAC
TACAAAAAGATCTGGACGAATGGCTGGCTTATTACAACAATGAACGAACCCATCAAGGTAAAATGTGCTGCGGCAGAACACCACTGGCCACATTAATAGA
TGGGAAACGGTTTTGGGCTGAAAAGAATTTAGCTCAAATCTAAGCTGACAGTAGCACCCTAAAAAATGGGCAACTGTCAGATCAGGTCTGAGCTAGTACA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1041 bp346 aa1031143+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLHTNNPIIKHKAGLLNLAEELGNVSRACKVMGLSRDTFYRYQELVENGGVESLINQSRRTPNLKNRVDDVTENAVLTHAIAFPAHGQSRSSNELRKQGI
FVSASGVRSIWLRHGLENFKKRLKALEAKVELEGIILSDEQVAALERKQQDDEACGEIETHHPGYLGSQDTFYVGSLKGVGRIYQQTFVDTYSKVAFAKL
YTTKTPITSADLLNDRVLPFFETQALPMLRILTDRGTEYCGKVEQHDYQLYLAINDIEHTKTKARHPQTNGICERFHKTILNEFYQVTFRKKLYANMEEL
QKDLDEWLAYYNNERTHQGKMCCGRTPLATLIDGKRFWAEKNLAQI

 

Blast result :
Comments
There is one copy of ISShes15 in the chromosome of Shewanella sp. MR-7. The ISShes15 transposase has 84% identity to that of ISSde2.
References
1] Romine, M. F. (2008). Direct submission.