ISSba10
- Family IS30
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009036 | ND | Shewanella baltica | Shewanella baltica OS155 |
DNA section
IS Length : 1069 bp
Ends
IR Length : 22/28
IRL : GAATTCAGATAATAAGTGCAACGCTCGGTCATAATGGTGAGGAGGGAGTT
IRR : GAATTCAAGTCCGAAGTGCAACGCTAGGCCGCCTTTCTTAGCTCTGCAAA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ACATAGTCGC | GC | CTCGTTAATA | 2 |
DNA sequence
GAATTCAGATAATAAGTGCAACGCTCGGTCATAATGGTGAGGAGGGAGTTAGCTGCTGATAAGCTATCCCTCTTCCGACAAAAGATGAGCGAGTAACAAT
GAACTACCAGCAGCTAACTGAGGGGCAACGATACCAGATTGCCCTGCTATATAAAGAGAATTGTAGTTGTCGTGAGATTGGGCAGCGGATTGGGGTCAGT
AAATCTACGATTTCCCGTGAACTCAGGCGCAATGGTACAACAGCGGGTTATGTTGCGCAGAGTGCTCAGCGTCAGTGTGAGCACCGACGTGTTGTGGCGG
CAAAGCGGGCTGTAAGCCAAAGTACTATTGAGTTTGTTGAGTTTGCTCTGGAGTGGAAGTGGAGCCCTGAGCAGATAAGCGCTGTGGCAAAATTGATTGG
TCTGTCGGTCAGTCATGAGTGGATTTATCAGTATGTTTTTGCGGATAAATCTCGTGGTGGCGTTCTGTATGAACATCTTAGGCAGGGTAAGCGTCGTTAT
CGCAAAGGGTATGGGCAGAAGCGAGGCGGTATCACTGACGCTGTTTCCATAGCGCTACGCCCTGCTATTGTTGATGAGCGTGGTCGCCTTGGGGACTGGG
AGGCCGACCTTGTGCTGGGTAAACAGGGAACCGGTGCAATCGTCACGCTGGCTGAGCGTAAGAGTCGAATTTATCTGACAAAAAAGGTTTTTTCAAAGGA
TGCGGTTGAGGTCAGCAAAGCGATTATCTCAATGCTGAGTGACTACAAGGATGCGTGCCATACAATAACCTTCGACAATGGTCGTGAGTTCAGCGAGCAC
AAGGCGATAGCGAAGGCGCTGGAGGCAGATATGTATTTTGCCCATCCCTACTCGTCGCAGGAGCGTGGACTGAACGAGAACACAAATGGACTTCTGAGGC
AGTTTATCCCGAAGGGGACGGACCTGAGAACGGTATCAGAAGAGGACTTACAGCGCTATCAGGGTGCACTGAACAGTAGGCCACGCAAGTGCCTTGGGTT
TAGACAACCTTCGGTGGTGTTTGCAGAGCTAAGAAAGGCGGCCTAGCGTTGCACTTCGGACTTGAATTC
GAACTACCAGCAGCTAACTGAGGGGCAACGATACCAGATTGCCCTGCTATATAAAGAGAATTGTAGTTGTCGTGAGATTGGGCAGCGGATTGGGGTCAGT
AAATCTACGATTTCCCGTGAACTCAGGCGCAATGGTACAACAGCGGGTTATGTTGCGCAGAGTGCTCAGCGTCAGTGTGAGCACCGACGTGTTGTGGCGG
CAAAGCGGGCTGTAAGCCAAAGTACTATTGAGTTTGTTGAGTTTGCTCTGGAGTGGAAGTGGAGCCCTGAGCAGATAAGCGCTGTGGCAAAATTGATTGG
TCTGTCGGTCAGTCATGAGTGGATTTATCAGTATGTTTTTGCGGATAAATCTCGTGGTGGCGTTCTGTATGAACATCTTAGGCAGGGTAAGCGTCGTTAT
CGCAAAGGGTATGGGCAGAAGCGAGGCGGTATCACTGACGCTGTTTCCATAGCGCTACGCCCTGCTATTGTTGATGAGCGTGGTCGCCTTGGGGACTGGG
AGGCCGACCTTGTGCTGGGTAAACAGGGAACCGGTGCAATCGTCACGCTGGCTGAGCGTAAGAGTCGAATTTATCTGACAAAAAAGGTTTTTTCAAAGGA
TGCGGTTGAGGTCAGCAAAGCGATTATCTCAATGCTGAGTGACTACAAGGATGCGTGCCATACAATAACCTTCGACAATGGTCGTGAGTTCAGCGAGCAC
AAGGCGATAGCGAAGGCGCTGGAGGCAGATATGTATTTTGCCCATCCCTACTCGTCGCAGGAGCGTGGACTGAACGAGAACACAAATGGACTTCTGAGGC
AGTTTATCCCGAAGGGGACGGACCTGAGAACGGTATCAGAAGAGGACTTACAGCGCTATCAGGGTGCACTGAACAGTAGGCCACGCAAGTGCCTTGGGTT
TAGACAACCTTCGGTGGTGTTTGCAGAGCTAAGAAAGGCGGCCTAGCGTTGCACTTCGGACTTGAATTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
948 bp | 315 aa | 99 | 1046 | + | No |
Chemistry : DDE
ORF sequence :
MNYQQLTEGQRYQIALLYKENCSCREIGQRIGVSKSTISRELRRNGTTAGYVAQSAQRQCEHRRVVAAKRAVSQSTIEFVEFALEWKWSPEQISAVAKLI
GLSVSHEWIYQYVFADKSRGGVLYEHLRQGKRRYRKGYGQKRGGITDAVSIALRPAIVDERGRLGDWEADLVLGKQGTGAIVTLAERKSRIYLTKKVFSK
DAVEVSKAIISMLSDYKDACHTITFDNGREFSEHKAIAKALEADMYFAHPYSSQERGLNENTNGLLRQFIPKGTDLRTVSEEDLQRYQGALNSRPRKCLG
FRQPSVVFAELRKAA
GLSVSHEWIYQYVFADKSRGGVLYEHLRQGKRRYRKGYGQKRGGITDAVSIALRPAIVDERGRLGDWEADLVLGKQGTGAIVTLAERKSRIYLTKKVFSK
DAVEVSKAIISMLSDYKDACHTITFDNGREFSEHKAIAKALEADMYFAHPYSSQERGLNENTNGLLRQFIPKGTDLRTVSEEDLQRYQGALNSRPRKCLG
FRQPSVVFAELRKAA
Blast result :
Comments
There is one copy of ISSba10 on plasmid 2 of Shewanella baltica OS155. The ISSba10 transposase has 63% identity with that of ISAs2.
References
1] Romine, M. F. (2008). Direct submission.