ISSba10

  • Family IS30
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009036 ND Shewanella baltica
Shewanella baltica OS155
DNA section
IS Length : 1069 bp

Ends


IR Length : 22/28

IRL : GAATTCAGATAATAAGTGCAACGCTCGGTCATAATGGTGAGGAGGGAGTT
IRR : GAATTCAAGTCCGAAGTGCAACGCTAGGCCGCCTTTCTTAGCTCTGCAAA

Insertion site


Left flankDirect repeatRight flankDR Length
ACATAGTCGCGCCTCGTTAATA2

DNA sequence

GAATTCAGATAATAAGTGCAACGCTCGGTCATAATGGTGAGGAGGGAGTTAGCTGCTGATAAGCTATCCCTCTTCCGACAAAAGATGAGCGAGTAACAAT
GAACTACCAGCAGCTAACTGAGGGGCAACGATACCAGATTGCCCTGCTATATAAAGAGAATTGTAGTTGTCGTGAGATTGGGCAGCGGATTGGGGTCAGT
AAATCTACGATTTCCCGTGAACTCAGGCGCAATGGTACAACAGCGGGTTATGTTGCGCAGAGTGCTCAGCGTCAGTGTGAGCACCGACGTGTTGTGGCGG
CAAAGCGGGCTGTAAGCCAAAGTACTATTGAGTTTGTTGAGTTTGCTCTGGAGTGGAAGTGGAGCCCTGAGCAGATAAGCGCTGTGGCAAAATTGATTGG
TCTGTCGGTCAGTCATGAGTGGATTTATCAGTATGTTTTTGCGGATAAATCTCGTGGTGGCGTTCTGTATGAACATCTTAGGCAGGGTAAGCGTCGTTAT
CGCAAAGGGTATGGGCAGAAGCGAGGCGGTATCACTGACGCTGTTTCCATAGCGCTACGCCCTGCTATTGTTGATGAGCGTGGTCGCCTTGGGGACTGGG
AGGCCGACCTTGTGCTGGGTAAACAGGGAACCGGTGCAATCGTCACGCTGGCTGAGCGTAAGAGTCGAATTTATCTGACAAAAAAGGTTTTTTCAAAGGA
TGCGGTTGAGGTCAGCAAAGCGATTATCTCAATGCTGAGTGACTACAAGGATGCGTGCCATACAATAACCTTCGACAATGGTCGTGAGTTCAGCGAGCAC
AAGGCGATAGCGAAGGCGCTGGAGGCAGATATGTATTTTGCCCATCCCTACTCGTCGCAGGAGCGTGGACTGAACGAGAACACAAATGGACTTCTGAGGC
AGTTTATCCCGAAGGGGACGGACCTGAGAACGGTATCAGAAGAGGACTTACAGCGCTATCAGGGTGCACTGAACAGTAGGCCACGCAAGTGCCTTGGGTT
TAGACAACCTTCGGTGGTGTTTGCAGAGCTAAGAAAGGCGGCCTAGCGTTGCACTTCGGACTTGAATTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
948 bp315 aa991046+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNYQQLTEGQRYQIALLYKENCSCREIGQRIGVSKSTISRELRRNGTTAGYVAQSAQRQCEHRRVVAAKRAVSQSTIEFVEFALEWKWSPEQISAVAKLI
GLSVSHEWIYQYVFADKSRGGVLYEHLRQGKRRYRKGYGQKRGGITDAVSIALRPAIVDERGRLGDWEADLVLGKQGTGAIVTLAERKSRIYLTKKVFSK
DAVEVSKAIISMLSDYKDACHTITFDNGREFSEHKAIAKALEADMYFAHPYSSQERGLNENTNGLLRQFIPKGTDLRTVSEEDLQRYQGALNSRPRKCLG
FRQPSVVFAELRKAA

 

Blast result :
Comments
There is one copy of ISSba10 on plasmid 2 of Shewanella baltica OS155. The ISSba10 transposase has 63% identity with that of ISAs2.
References
1] Romine, M. F. (2008). Direct submission.