ISStau4
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMD00000000 | ND | Stigmatella aurantiaca | Stigmatella aurantiaca DW4/3-1 |
DNA section
IS Length : 1579 bp
Ends
IR Length : 21/27
IRL : GTAACCGTTCACCGGACTGGGCTGCCTGGGGGCTGAGCAGGAGCGGACAG
IRR : GTAACCGTTCACCGGCTCAGGCAGCGTTCGCGAGCTGAAGCATCTCCGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGATGAGCTT | TCATCGTC | TTCCACGGCG | 8 |
DNA sequence
GTAACCGTTCACCGGACTGGGCTGCCTGGGGGCTGAGCAGGAGCGGACAGAGGGCAGAGGAACCTATCGACAGGGTAGGCCAAGCCATGTACTACCTGAG
AGGTGAGCCCAGGCGACGCCAAAGATGTCCGAATCTCAGAGCTGGAAGCGCAGCTGGCGCAGAGGGACGAGCGCATCGCGCAACTGATGGCGCAGGTGGG
AGCCCTCACCCAGCGGGTGGCGGAGCTGGAGCAGAAGCTGGCGCAGAACTCGAGCAACTCCTCGCGTCCGCCCTCATCCGATGCGCCTGGCGGCCCGCGC
CCAGGGAAGAAGCCCACGGGCAGGCGCCCCGGCGGCCAGCCCGGACACAAGAAGCATGAGAGAAGGCTGGTGCCGCCCGAGGAGGTGCAGCACTTCGTGG
AGCTGGTACCCAAGCAGTGCAAGGGCTGTGGGCGCCGACTGGTGGGCAAAGACGCCCAGCCGCGCCGCCATCAAGTGGTGGAGGTGCCTCCTCTGTCGGC
CCTCATCACCGAGTACCGTAGCCACGCGCTGGAGTGCACCGCGTGCGGTACGGTGACGCGACAGCCGGTGCCTTTCCACGCGCGCAGCGCCTTTGGGGAC
AGGTTGGGTGCCCTGGCCAGCCTGCTGGTGGGTAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTGTCGGACATGCTGGGTGTCGAGTTGTCGG
TGGGGAGCGTCGTGAATCTCGAAGAGGAGATGGCTGACGCGCTGGAGCCGGCGGTGCTCCAAGCCACCCAGTACGTGCAGGCGGCCGACACGGTCCATGC
GGATGAAACCGGGTGGGTGGAGGGGCGTGAGCAAGGGCGGGGCAAGCGCGCCTGGCTGTGGGTGGTGGCCACCGCCCTGGTGGCCCTCTTCCATATCGCC
ACGAGCCGAGGCGGTAAGGTGGCGCGAGCCTTGCTGGGGGAGGACTTCACCGGCTTCCTCGTCAGCGACAGGTGGAGCGGCTACGCGTGGTACGACGCGG
GCCTGCGGCAGGTGTGCTGGGCCCACCTCACCCGCGACTTCCAGGGCTTCATCGACCGCGGTGGCACCGGAGGCCGCCTGGGCAAGAAGCTGATGCACCA
GAGAAACCTCTTCTTCACCTGGTACCACCGTGTGCGCGATGGAACCATGACTCGCCAGGACTTCGAGAAGAGGATGCCCGAGGTGGAGCGCGAGGTGGGG
CGGCTGCTGCGCCGGTCCGCAGCACGTGCTGAGAAGAAGACGGCCGGGATGGCTCGGGAGATTCTCCAGTGGGAGAAGTGCCTGTGGACGTTTGTTGACG
TGCCGGGACTGGAGCCCACCAACAACTTCGGCGAGAGGTGCCTGCGTCACGCCGTCATGTACAGGAAGACTTCCTTCGGCACCCAAGGCCCTCAGGGCAG
CCGCTTCGTGGAGCGGCTCCTTACGGCTGTTACCACCCTCAAGCTCCAACGGCGCGGCGTGCTGAGCTTCCTGACCGACACGCTGCACGCTCACCGCCGC
AGCCTTCCGATGCCCTCGCTGCTGCCCGCTGCGGAGATGCTTCAGCTCGCGAACGCTGCCTGAGCCGGTGAACGGTTAC
AGGTGAGCCCAGGCGACGCCAAAGATGTCCGAATCTCAGAGCTGGAAGCGCAGCTGGCGCAGAGGGACGAGCGCATCGCGCAACTGATGGCGCAGGTGGG
AGCCCTCACCCAGCGGGTGGCGGAGCTGGAGCAGAAGCTGGCGCAGAACTCGAGCAACTCCTCGCGTCCGCCCTCATCCGATGCGCCTGGCGGCCCGCGC
CCAGGGAAGAAGCCCACGGGCAGGCGCCCCGGCGGCCAGCCCGGACACAAGAAGCATGAGAGAAGGCTGGTGCCGCCCGAGGAGGTGCAGCACTTCGTGG
AGCTGGTACCCAAGCAGTGCAAGGGCTGTGGGCGCCGACTGGTGGGCAAAGACGCCCAGCCGCGCCGCCATCAAGTGGTGGAGGTGCCTCCTCTGTCGGC
CCTCATCACCGAGTACCGTAGCCACGCGCTGGAGTGCACCGCGTGCGGTACGGTGACGCGACAGCCGGTGCCTTTCCACGCGCGCAGCGCCTTTGGGGAC
AGGTTGGGTGCCCTGGCCAGCCTGCTGGTGGGTAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTGTCGGACATGCTGGGTGTCGAGTTGTCGG
TGGGGAGCGTCGTGAATCTCGAAGAGGAGATGGCTGACGCGCTGGAGCCGGCGGTGCTCCAAGCCACCCAGTACGTGCAGGCGGCCGACACGGTCCATGC
GGATGAAACCGGGTGGGTGGAGGGGCGTGAGCAAGGGCGGGGCAAGCGCGCCTGGCTGTGGGTGGTGGCCACCGCCCTGGTGGCCCTCTTCCATATCGCC
ACGAGCCGAGGCGGTAAGGTGGCGCGAGCCTTGCTGGGGGAGGACTTCACCGGCTTCCTCGTCAGCGACAGGTGGAGCGGCTACGCGTGGTACGACGCGG
GCCTGCGGCAGGTGTGCTGGGCCCACCTCACCCGCGACTTCCAGGGCTTCATCGACCGCGGTGGCACCGGAGGCCGCCTGGGCAAGAAGCTGATGCACCA
GAGAAACCTCTTCTTCACCTGGTACCACCGTGTGCGCGATGGAACCATGACTCGCCAGGACTTCGAGAAGAGGATGCCCGAGGTGGAGCGCGAGGTGGGG
CGGCTGCTGCGCCGGTCCGCAGCACGTGCTGAGAAGAAGACGGCCGGGATGGCTCGGGAGATTCTCCAGTGGGAGAAGTGCCTGTGGACGTTTGTTGACG
TGCCGGGACTGGAGCCCACCAACAACTTCGGCGAGAGGTGCCTGCGTCACGCCGTCATGTACAGGAAGACTTCCTTCGGCACCCAAGGCCCTCAGGGCAG
CCGCTTCGTGGAGCGGCTCCTTACGGCTGTTACCACCCTCAAGCTCCAACGGCGCGGCGTGCTGAGCTTCCTGACCGACACGCTGCACGCTCACCGCCGC
AGCCTTCCGATGCCCTCGCTGCTGCCCGCTGCGGAGATGCTTCAGCTCGCGAACGCTGCCTGAGCCGGTGAACGGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1347 bp | 448 aa | 217 | 1563 | + | No |
Chemistry : DDE
ORF sequence :
MAELEQKLAQNSSNSSRPPSSDAPGGPRPGKKPTGRRPGGQPGHKKHERRLVPPEEVQHFVELVPKQCKGCGRRLVGKDAQPRRHQVVEVPPLSALITEY
RSHALECTACGTVTRQPVPFHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELSVGSVVNLEEEMADALEPAVLQATQYVQAADTVHADETGW
VEGREQGRGKRAWLWVVATALVALFHIATSRGGKVARALLGEDFTGFLVSDRWSGYAWYDAGLRQVCWAHLTRDFQGFIDRGGTGGRLGKKLMHQRNLFF
TWYHRVRDGTMTRQDFEKRMPEVEREVGRLLRRSAARAEKKTAGMAREILQWEKCLWTFVDVPGLEPTNNFGERCLRHAVMYRKTSFGTQGPQGSRFVER
LLTAVTTLKLQRRGVLSFLTDTLHAHRRSLPMPSLLPAAEMLQLANAA
RSHALECTACGTVTRQPVPFHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELSVGSVVNLEEEMADALEPAVLQATQYVQAADTVHADETGW
VEGREQGRGKRAWLWVVATALVALFHIATSRGGKVARALLGEDFTGFLVSDRWSGYAWYDAGLRQVCWAHLTRDFQGFIDRGGTGGRLGKKLMHQRNLFF
TWYHRVRDGTMTRQDFEKRMPEVEREVGRLLRRSAARAEKKTAGMAREILQWEKCLWTFVDVPGLEPTNNFGERCLRHAVMYRKTSFGTQGPQGSRFVER
LLTAVTTLKLQRRGVLSFLTDTLHAHRRSLPMPSLLPAAEMLQLANAA
Blast result :
Comments
ISStau4 is 93% aa similar to ISStau3.
References
1] ISfinder annotation (2008).
2] Nierman,W.C. (2006) Direct submission GenBank.
2] Nierman,W.C. (2006) Direct submission GenBank.