ISStau4

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMD00000000 ND Stigmatella aurantiaca
Stigmatella aurantiaca DW4/3-1
DNA section
IS Length : 1579 bp

Ends


IR Length : 21/27

IRL : GTAACCGTTCACCGGACTGGGCTGCCTGGGGGCTGAGCAGGAGCGGACAG
IRR : GTAACCGTTCACCGGCTCAGGCAGCGTTCGCGAGCTGAAGCATCTCCGCA

Insertion site


Left flankDirect repeatRight flankDR Length
CGATGAGCTTTCATCGTCTTCCACGGCG8

DNA sequence

GTAACCGTTCACCGGACTGGGCTGCCTGGGGGCTGAGCAGGAGCGGACAGAGGGCAGAGGAACCTATCGACAGGGTAGGCCAAGCCATGTACTACCTGAG
AGGTGAGCCCAGGCGACGCCAAAGATGTCCGAATCTCAGAGCTGGAAGCGCAGCTGGCGCAGAGGGACGAGCGCATCGCGCAACTGATGGCGCAGGTGGG
AGCCCTCACCCAGCGGGTGGCGGAGCTGGAGCAGAAGCTGGCGCAGAACTCGAGCAACTCCTCGCGTCCGCCCTCATCCGATGCGCCTGGCGGCCCGCGC
CCAGGGAAGAAGCCCACGGGCAGGCGCCCCGGCGGCCAGCCCGGACACAAGAAGCATGAGAGAAGGCTGGTGCCGCCCGAGGAGGTGCAGCACTTCGTGG
AGCTGGTACCCAAGCAGTGCAAGGGCTGTGGGCGCCGACTGGTGGGCAAAGACGCCCAGCCGCGCCGCCATCAAGTGGTGGAGGTGCCTCCTCTGTCGGC
CCTCATCACCGAGTACCGTAGCCACGCGCTGGAGTGCACCGCGTGCGGTACGGTGACGCGACAGCCGGTGCCTTTCCACGCGCGCAGCGCCTTTGGGGAC
AGGTTGGGTGCCCTGGCCAGCCTGCTGGTGGGTAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTGTCGGACATGCTGGGTGTCGAGTTGTCGG
TGGGGAGCGTCGTGAATCTCGAAGAGGAGATGGCTGACGCGCTGGAGCCGGCGGTGCTCCAAGCCACCCAGTACGTGCAGGCGGCCGACACGGTCCATGC
GGATGAAACCGGGTGGGTGGAGGGGCGTGAGCAAGGGCGGGGCAAGCGCGCCTGGCTGTGGGTGGTGGCCACCGCCCTGGTGGCCCTCTTCCATATCGCC
ACGAGCCGAGGCGGTAAGGTGGCGCGAGCCTTGCTGGGGGAGGACTTCACCGGCTTCCTCGTCAGCGACAGGTGGAGCGGCTACGCGTGGTACGACGCGG
GCCTGCGGCAGGTGTGCTGGGCCCACCTCACCCGCGACTTCCAGGGCTTCATCGACCGCGGTGGCACCGGAGGCCGCCTGGGCAAGAAGCTGATGCACCA
GAGAAACCTCTTCTTCACCTGGTACCACCGTGTGCGCGATGGAACCATGACTCGCCAGGACTTCGAGAAGAGGATGCCCGAGGTGGAGCGCGAGGTGGGG
CGGCTGCTGCGCCGGTCCGCAGCACGTGCTGAGAAGAAGACGGCCGGGATGGCTCGGGAGATTCTCCAGTGGGAGAAGTGCCTGTGGACGTTTGTTGACG
TGCCGGGACTGGAGCCCACCAACAACTTCGGCGAGAGGTGCCTGCGTCACGCCGTCATGTACAGGAAGACTTCCTTCGGCACCCAAGGCCCTCAGGGCAG
CCGCTTCGTGGAGCGGCTCCTTACGGCTGTTACCACCCTCAAGCTCCAACGGCGCGGCGTGCTGAGCTTCCTGACCGACACGCTGCACGCTCACCGCCGC
AGCCTTCCGATGCCCTCGCTGCTGCCCGCTGCGGAGATGCTTCAGCTCGCGAACGCTGCCTGAGCCGGTGAACGGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1347 bp448 aa2171563+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAELEQKLAQNSSNSSRPPSSDAPGGPRPGKKPTGRRPGGQPGHKKHERRLVPPEEVQHFVELVPKQCKGCGRRLVGKDAQPRRHQVVEVPPLSALITEY
RSHALECTACGTVTRQPVPFHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELSVGSVVNLEEEMADALEPAVLQATQYVQAADTVHADETGW
VEGREQGRGKRAWLWVVATALVALFHIATSRGGKVARALLGEDFTGFLVSDRWSGYAWYDAGLRQVCWAHLTRDFQGFIDRGGTGGRLGKKLMHQRNLFF
TWYHRVRDGTMTRQDFEKRMPEVEREVGRLLRRSAARAEKKTAGMAREILQWEKCLWTFVDVPGLEPTNNFGERCLRHAVMYRKTSFGTQGPQGSRFVER
LLTAVTTLKLQRRGVLSFLTDTLHAHRRSLPMPSLLPAAEMLQLANAA

 

Blast result :
Comments
ISStau4 is 93% aa similar to ISStau3.
References
1] ISfinder annotation (2008).

2] Nierman,W.C. (2006) Direct submission GenBank.