ISAli17
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Azospirillum lipoferum | Azospirillum lipoferum 4B plasmid p5AZO 552 |
DNA section
IS Length : 1109 bp
Ends
IR Length : 24/34
IRL : GGACATTGGTGCAAAAAGGCCGGGGTGGTGGCGGTCGGCAGGGCGAGCCG
IRR : GGACTTTGGTGCGCAAATGGGCGTGCCGGCGGAGTCCTCGCCAGGGCAGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GATCGGCTGAATGGTGATGCCAA | TCTCCACGTTAAGGACCTGTGAA | 0 |
DNA sequence
GGACATTGGTGCAAAAAGGCCGGGGTGGTGGCGGTCGGCAGGGCGAGCCGGTATAGAGGCGCCCCCCACAGAAGCTGAGAGCCGGATGCTGTACAAGGCC
AACGAGCCCCGCCGCGCCAAGATCCCGAAGGCGCGCTACCGTATGGAGAACTGGGCGGCCTACGACGCGGCGCTGCGCCGGCGCGGCGACCTGACGATCT
GGGTGTCGCCGGAGGCGATCGCCGCCTGGACGCCGCCCGCCACGGGGCGGCGCGGCCGGCCTTCCCGCTACTCGGCCATCGCCATTGAGGCCGGGCTGAT
GCTGCGCCTGGCCTTCGGTCGGCCATGGCGGCAGACCGAGGGTTTGCTGGGCTCGCTCATGCGCCTGCTCGGCCTGGACCTGCCGGTCCCGGATCACACG
ACGTTTTCCCGGCGCAGCGCCGATCTGGCAGTCGAGACGGCGCTGGTCAGGACGGATGGGCCGGCCACCGTGGTCATCGACTCCACCGGGCTGAAGGTGT
TCGGCAAAGGCGAATGGTACCTGCAGAAATACGGCGGCCCGCCGCGCCGGAGCTGGAGGAAGCTCCATCTGGCGGTCGATCCCGACACGGGCGAGGTCCT
TGCCTCGGAGTTGACGGGCAACGAGGAGGGGGACGCTTCACTGGTCGGCTCGTTGCTCGACCAGATCACCCGCCCGATCGATGCGGTCATCGCCGACGGT
GCGTACGACGGCGAGCCCATCTATTGCGCCGTTGCCGAGCGTGCGCCGGACGCCGAGGTGATCATCCCGCCGCGCGCCACTGCGGTGGTGAGCGACAGCG
CCGAGACCGCCCCCACCCGGCGCGACCGCCACATCCGGATGATCAAAGAGCGCGGGCGGCTTGGCTGGCAGCGCGCGGTCCAGTACGGCCGCAGATCGCT
GGTTGAGGTGGCGATCCTGAGGTACAAGGTTCTCATCGGACGCAGCCTCCGCGCTCGGACTCTGCCCGCGCAAAAAGTCGAAGCGGCCATCGGCTGCAAG
GTCATGAACCTCATGACCAGCTTGGGCATGCCAGTCACCCGAAAGGTCGCCTGATTACCTCTGCCCTGGCGAGGACTCCGCCGGCACGCCCATTTGCGCA
CCAAAGTCC
AACGAGCCCCGCCGCGCCAAGATCCCGAAGGCGCGCTACCGTATGGAGAACTGGGCGGCCTACGACGCGGCGCTGCGCCGGCGCGGCGACCTGACGATCT
GGGTGTCGCCGGAGGCGATCGCCGCCTGGACGCCGCCCGCCACGGGGCGGCGCGGCCGGCCTTCCCGCTACTCGGCCATCGCCATTGAGGCCGGGCTGAT
GCTGCGCCTGGCCTTCGGTCGGCCATGGCGGCAGACCGAGGGTTTGCTGGGCTCGCTCATGCGCCTGCTCGGCCTGGACCTGCCGGTCCCGGATCACACG
ACGTTTTCCCGGCGCAGCGCCGATCTGGCAGTCGAGACGGCGCTGGTCAGGACGGATGGGCCGGCCACCGTGGTCATCGACTCCACCGGGCTGAAGGTGT
TCGGCAAAGGCGAATGGTACCTGCAGAAATACGGCGGCCCGCCGCGCCGGAGCTGGAGGAAGCTCCATCTGGCGGTCGATCCCGACACGGGCGAGGTCCT
TGCCTCGGAGTTGACGGGCAACGAGGAGGGGGACGCTTCACTGGTCGGCTCGTTGCTCGACCAGATCACCCGCCCGATCGATGCGGTCATCGCCGACGGT
GCGTACGACGGCGAGCCCATCTATTGCGCCGTTGCCGAGCGTGCGCCGGACGCCGAGGTGATCATCCCGCCGCGCGCCACTGCGGTGGTGAGCGACAGCG
CCGAGACCGCCCCCACCCGGCGCGACCGCCACATCCGGATGATCAAAGAGCGCGGGCGGCTTGGCTGGCAGCGCGCGGTCCAGTACGGCCGCAGATCGCT
GGTTGAGGTGGCGATCCTGAGGTACAAGGTTCTCATCGGACGCAGCCTCCGCGCTCGGACTCTGCCCGCGCAAAAAGTCGAAGCGGCCATCGGCTGCAAG
GTCATGAACCTCATGACCAGCTTGGGCATGCCAGTCACCCGAAAGGTCGCCTGATTACCTCTGCCCTGGCGAGGACTCCGCCGGCACGCCCATTTGCGCA
CCAAAGTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 86 | 1054 | + | No |
Chemistry : DDE
ORF sequence :
MLYKANEPRRAKIPKARYRMENWAAYDAALRRRGDLTIWVSPEAIAAWTPPATGRRGRPSRYSAIAIEAGLMLRLAFGRPWRQTEGLLGSLMRLLGLDLP
VPDHTTFSRRSADLAVETALVRTDGPATVVIDSTGLKVFGKGEWYLQKYGGPPRRSWRKLHLAVDPDTGEVLASELTGNEEGDASLVGSLLDQITRPIDA
VIADGAYDGEPIYCAVAERAPDAEVIIPPRATAVVSDSAETAPTRRDRHIRMIKERGRLGWQRAVQYGRRSLVEVAILRYKVLIGRSLRARTLPAQKVEA
AIGCKVMNLMTSLGMPVTRKVA
VPDHTTFSRRSADLAVETALVRTDGPATVVIDSTGLKVFGKGEWYLQKYGGPPRRSWRKLHLAVDPDTGEVLASELTGNEEGDASLVGSLLDQITRPIDA
VIADGAYDGEPIYCAVAERAPDAEVIIPPRATAVVSDSAETAPTRRDRHIRMIKERGRLGWQRAVQYGRRSLVEVAILRYKVLIGRSLRARTLPAQKVEA
AIGCKVMNLMTSLGMPVTRKVA
Blast result :
Comments
ISAli17 is 59% aa similar to ISRusp1.
References
1] ISfinder annotation (2008)