ISAli17

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Azospirillum lipoferum
Azospirillum lipoferum 4B plasmid p5AZO 552
DNA section
IS Length : 1109 bp

Ends


IR Length : 24/34

IRL : GGACATTGGTGCAAAAAGGCCGGGGTGGTGGCGGTCGGCAGGGCGAGCCG
IRR : GGACTTTGGTGCGCAAATGGGCGTGCCGGCGGAGTCCTCGCCAGGGCAGA

Insertion site


Left flankDirect repeatRight flankDR Length
GATCGGCTGAATGGTGATGCCAATCTCCACGTTAAGGACCTGTGAA0

DNA sequence

GGACATTGGTGCAAAAAGGCCGGGGTGGTGGCGGTCGGCAGGGCGAGCCGGTATAGAGGCGCCCCCCACAGAAGCTGAGAGCCGGATGCTGTACAAGGCC
AACGAGCCCCGCCGCGCCAAGATCCCGAAGGCGCGCTACCGTATGGAGAACTGGGCGGCCTACGACGCGGCGCTGCGCCGGCGCGGCGACCTGACGATCT
GGGTGTCGCCGGAGGCGATCGCCGCCTGGACGCCGCCCGCCACGGGGCGGCGCGGCCGGCCTTCCCGCTACTCGGCCATCGCCATTGAGGCCGGGCTGAT
GCTGCGCCTGGCCTTCGGTCGGCCATGGCGGCAGACCGAGGGTTTGCTGGGCTCGCTCATGCGCCTGCTCGGCCTGGACCTGCCGGTCCCGGATCACACG
ACGTTTTCCCGGCGCAGCGCCGATCTGGCAGTCGAGACGGCGCTGGTCAGGACGGATGGGCCGGCCACCGTGGTCATCGACTCCACCGGGCTGAAGGTGT
TCGGCAAAGGCGAATGGTACCTGCAGAAATACGGCGGCCCGCCGCGCCGGAGCTGGAGGAAGCTCCATCTGGCGGTCGATCCCGACACGGGCGAGGTCCT
TGCCTCGGAGTTGACGGGCAACGAGGAGGGGGACGCTTCACTGGTCGGCTCGTTGCTCGACCAGATCACCCGCCCGATCGATGCGGTCATCGCCGACGGT
GCGTACGACGGCGAGCCCATCTATTGCGCCGTTGCCGAGCGTGCGCCGGACGCCGAGGTGATCATCCCGCCGCGCGCCACTGCGGTGGTGAGCGACAGCG
CCGAGACCGCCCCCACCCGGCGCGACCGCCACATCCGGATGATCAAAGAGCGCGGGCGGCTTGGCTGGCAGCGCGCGGTCCAGTACGGCCGCAGATCGCT
GGTTGAGGTGGCGATCCTGAGGTACAAGGTTCTCATCGGACGCAGCCTCCGCGCTCGGACTCTGCCCGCGCAAAAAGTCGAAGCGGCCATCGGCTGCAAG
GTCATGAACCTCATGACCAGCTTGGGCATGCCAGTCACCCGAAAGGTCGCCTGATTACCTCTGCCCTGGCGAGGACTCCGCCGGCACGCCCATTTGCGCA
CCAAAGTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa861054+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLYKANEPRRAKIPKARYRMENWAAYDAALRRRGDLTIWVSPEAIAAWTPPATGRRGRPSRYSAIAIEAGLMLRLAFGRPWRQTEGLLGSLMRLLGLDLP
VPDHTTFSRRSADLAVETALVRTDGPATVVIDSTGLKVFGKGEWYLQKYGGPPRRSWRKLHLAVDPDTGEVLASELTGNEEGDASLVGSLLDQITRPIDA
VIADGAYDGEPIYCAVAERAPDAEVIIPPRATAVVSDSAETAPTRRDRHIRMIKERGRLGWQRAVQYGRRSLVEVAILRYKVLIGRSLRARTLPAQKVEA
AIGCKVMNLMTSLGMPVTRKVA

 

Blast result :
Comments
ISAli17 is 59% aa similar to ISRusp1.
References
1] ISfinder annotation (2008)