ISSpu11

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008750 ND Shewanella putrefaciens
Shewanella putrefaciens W3-18-1
DNA section
IS Length : 1059 bp

Ends


IR Length : 18

IRL : GGCTTTGTTTCCTAAATCAGTTGAACTAAAACCATAGCTGGTGATCTGAT
IRR : GGCTTTGTTTCCTAAATCGATTCAGCGAACAAAGCCCCTCATAATCGTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TTGCTTAGATTTTAGCTCCACCAAAAAGT9

DNA sequence

GGCTTTGTTTCCTAAATCAGTTGAACTAAAACCATAGCTGGTGATCTGATCGGCATAGCCTATCAACTCACCCATCAATCGTGTCAAAACCTCGCTATAA
AACAACCAACTGGAAGCAATACAATCAAGCCTTAATCAATCGTGGCTCACTTACCTTCTGGATTGATGAGGACGCTATCGCCCAGTGGAAAGCTAAGGCC
GAGCAACCAAGGAAAGGTCGCCCACACGTATTTAGCGACTTAGCCATTACCACCGCACTGATGGTTAAACGTGTTTTCTCTATGCCACTGCGAGCGTTAC
AAGGCTTTATCAACTCGGTGTTTAAACTGGCTGATATTCCGCTTTCGTGCCCACATTACACTTGCATCAGCAAACGAGCGAAAGCCGTCAAGATTGCTTT
TAAAACCAAGACGCGTGGCACCATTGAGCACTTGGCTATCGACTCGACAGGCTTGAAGGTTTATGGCGAAGGTGAGTGGAAAGTGAAGAAACATGGCACA
GATGGCAAGCGCCGCGTGTGGCGTAAGCTGCATATCGCCGTCGATACCCATAGCCATGAAATTATTGCAGCAGAACTGAGTTTATCCGGTGTCACTGATG
CTGAAGTTATGCCGAATTTGCTCAAGCAAACCCATCGAAAAATCCGAAATATTTCAGGTGATGGTGCTTACGACACAAGAGCCTGTCACGATGCGGTTCG
TAGAAAACGCGCTTTAGTACTCATTCCACCGAGGGAAGGTGCTGCACTCTGGGAACAGGGACATCCGCGTAACTTAGCGGTCAGTTGGCAACAGCTTCAT
GGTTCAAATAAGCAGTGGAAAAAACGGTATGGTTATCATCGGCGGTCAATCTCAGAAACTGCCATGTACAGGGTAAAGCAATTACTTGGTGGCAGATTGA
GCCTGCGAAATTATAACGGTCAGGTGGGAGAAACTTACGCGATGATAAAGGCTTTGAACAAGCTTACAGGGCTAGGCATGCCTGAAACTTACCGTGTAGT
TTGATATTTAAACGATTATGAGGGGCTTTGTTCGCTGAATCGATTTAGGAAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
924 bp307 aa811004+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSKPRYKTTNWKQYNQALINRGSLTFWIDEDAIAQWKAKAEQPRKGRPHVFSDLAITTALMVKRVFSMPLRALQGFINSVFKLADIPLSCPHYTCISKRA
KAVKIAFKTKTRGTIEHLAIDSTGLKVYGEGEWKVKKHGTDGKRRVWRKLHIAVDTHSHEIIAAELSLSGVTDAEVMPNLLKQTHRKIRNISGDGAYDTR
ACHDAVRRKRALVLIPPREGAALWEQGHPRNLAVSWQQLHGSNKQWKKRYGYHRRSISETAMYRVKQLLGGRLSLRNYNGQVGETYAMIKALNKLTGLGM
PETYRVV

 

Blast result :
Comments
The transpose encoded by the single copy of ISSpu11 in Shewanella putrefaciens W3-18-1 has 92% identity with ISSod12.
References
1] Romine, M. (2008) Direct submission.