ISSpu11
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008750 | ND | Shewanella putrefaciens | Shewanella putrefaciens W3-18-1 |
DNA section
IS Length : 1059 bp
Ends
IR Length : 18
IRL : GGCTTTGTTTCCTAAATCAGTTGAACTAAAACCATAGCTGGTGATCTGAT
IRR : GGCTTTGTTTCCTAAATCGATTCAGCGAACAAAGCCCCTCATAATCGTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTGCTTAGAT | TTTAGCTCC | ACCAAAAAGT | 9 |
DNA sequence
GGCTTTGTTTCCTAAATCAGTTGAACTAAAACCATAGCTGGTGATCTGATCGGCATAGCCTATCAACTCACCCATCAATCGTGTCAAAACCTCGCTATAA
AACAACCAACTGGAAGCAATACAATCAAGCCTTAATCAATCGTGGCTCACTTACCTTCTGGATTGATGAGGACGCTATCGCCCAGTGGAAAGCTAAGGCC
GAGCAACCAAGGAAAGGTCGCCCACACGTATTTAGCGACTTAGCCATTACCACCGCACTGATGGTTAAACGTGTTTTCTCTATGCCACTGCGAGCGTTAC
AAGGCTTTATCAACTCGGTGTTTAAACTGGCTGATATTCCGCTTTCGTGCCCACATTACACTTGCATCAGCAAACGAGCGAAAGCCGTCAAGATTGCTTT
TAAAACCAAGACGCGTGGCACCATTGAGCACTTGGCTATCGACTCGACAGGCTTGAAGGTTTATGGCGAAGGTGAGTGGAAAGTGAAGAAACATGGCACA
GATGGCAAGCGCCGCGTGTGGCGTAAGCTGCATATCGCCGTCGATACCCATAGCCATGAAATTATTGCAGCAGAACTGAGTTTATCCGGTGTCACTGATG
CTGAAGTTATGCCGAATTTGCTCAAGCAAACCCATCGAAAAATCCGAAATATTTCAGGTGATGGTGCTTACGACACAAGAGCCTGTCACGATGCGGTTCG
TAGAAAACGCGCTTTAGTACTCATTCCACCGAGGGAAGGTGCTGCACTCTGGGAACAGGGACATCCGCGTAACTTAGCGGTCAGTTGGCAACAGCTTCAT
GGTTCAAATAAGCAGTGGAAAAAACGGTATGGTTATCATCGGCGGTCAATCTCAGAAACTGCCATGTACAGGGTAAAGCAATTACTTGGTGGCAGATTGA
GCCTGCGAAATTATAACGGTCAGGTGGGAGAAACTTACGCGATGATAAAGGCTTTGAACAAGCTTACAGGGCTAGGCATGCCTGAAACTTACCGTGTAGT
TTGATATTTAAACGATTATGAGGGGCTTTGTTCGCTGAATCGATTTAGGAAACAAAGCC
AACAACCAACTGGAAGCAATACAATCAAGCCTTAATCAATCGTGGCTCACTTACCTTCTGGATTGATGAGGACGCTATCGCCCAGTGGAAAGCTAAGGCC
GAGCAACCAAGGAAAGGTCGCCCACACGTATTTAGCGACTTAGCCATTACCACCGCACTGATGGTTAAACGTGTTTTCTCTATGCCACTGCGAGCGTTAC
AAGGCTTTATCAACTCGGTGTTTAAACTGGCTGATATTCCGCTTTCGTGCCCACATTACACTTGCATCAGCAAACGAGCGAAAGCCGTCAAGATTGCTTT
TAAAACCAAGACGCGTGGCACCATTGAGCACTTGGCTATCGACTCGACAGGCTTGAAGGTTTATGGCGAAGGTGAGTGGAAAGTGAAGAAACATGGCACA
GATGGCAAGCGCCGCGTGTGGCGTAAGCTGCATATCGCCGTCGATACCCATAGCCATGAAATTATTGCAGCAGAACTGAGTTTATCCGGTGTCACTGATG
CTGAAGTTATGCCGAATTTGCTCAAGCAAACCCATCGAAAAATCCGAAATATTTCAGGTGATGGTGCTTACGACACAAGAGCCTGTCACGATGCGGTTCG
TAGAAAACGCGCTTTAGTACTCATTCCACCGAGGGAAGGTGCTGCACTCTGGGAACAGGGACATCCGCGTAACTTAGCGGTCAGTTGGCAACAGCTTCAT
GGTTCAAATAAGCAGTGGAAAAAACGGTATGGTTATCATCGGCGGTCAATCTCAGAAACTGCCATGTACAGGGTAAAGCAATTACTTGGTGGCAGATTGA
GCCTGCGAAATTATAACGGTCAGGTGGGAGAAACTTACGCGATGATAAAGGCTTTGAACAAGCTTACAGGGCTAGGCATGCCTGAAACTTACCGTGTAGT
TTGATATTTAAACGATTATGAGGGGCTTTGTTCGCTGAATCGATTTAGGAAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
924 bp | 307 aa | 81 | 1004 | + | No |
Chemistry : DDE
ORF sequence :
MSKPRYKTTNWKQYNQALINRGSLTFWIDEDAIAQWKAKAEQPRKGRPHVFSDLAITTALMVKRVFSMPLRALQGFINSVFKLADIPLSCPHYTCISKRA
KAVKIAFKTKTRGTIEHLAIDSTGLKVYGEGEWKVKKHGTDGKRRVWRKLHIAVDTHSHEIIAAELSLSGVTDAEVMPNLLKQTHRKIRNISGDGAYDTR
ACHDAVRRKRALVLIPPREGAALWEQGHPRNLAVSWQQLHGSNKQWKKRYGYHRRSISETAMYRVKQLLGGRLSLRNYNGQVGETYAMIKALNKLTGLGM
PETYRVV
KAVKIAFKTKTRGTIEHLAIDSTGLKVYGEGEWKVKKHGTDGKRRVWRKLHIAVDTHSHEIIAAELSLSGVTDAEVMPNLLKQTHRKIRNISGDGAYDTR
ACHDAVRRKRALVLIPPREGAALWEQGHPRNLAVSWQQLHGSNKQWKKRYGYHRRSISETAMYRVKQLLGGRLSLRNYNGQVGETYAMIKALNKLTGLGM
PETYRVV
Blast result :
Comments
The transpose encoded by the single copy of ISSpu11 in Shewanella putrefaciens W3-18-1 has 92% identity with ISSod12.
References
1] Romine, M. (2008) Direct submission.