ISSpu7

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008750 ND Shewanella putrefaciens
Shewanella putrefaciens W3-18-1
DNA section
IS Length : 1761 bp

Ends


IR Length : 23/27

IRL : CCGTCATTCCGCAGCTAATTCCAGAATTTAAATAGTGTGATCTGGCGATC
IRR : CCGACATTCCGCAGCTAATTTAGGAATAAACTACCTCATAGAATCTACCG

Insertion site


Left flankDirect repeatRight flankDR Length
GTTGTAAGCATAATAGTCTATGCCT5
CGTGTCACTGGTGTAACAGTGCGAAA6
TTGAAGGTTTATTTATGGCTTGTTGT6
ATTACTAGCCTTAAAAGAACCATAGA6
CTTATCAGTGATTACATTTATCGCA5
TTCTGAAGCAATACATGGTAACCCCC6
TTTTGGTTTTTTATATCGCTAAACGA6
CTAGCCTAAGATATACACCTGCAATG6
GCGACTCGATTTATACCACTCATTTG6
TAATCCCCTTTTTTATCCCATTTATT6
ATAGGCACTGTTGTATCCAAATTATT6
GGAAACACCCATAGATTAAGTTACTT6

DNA sequence

CCGTCATTCCGCAGCTAATTCCAGAATTTAAATAGTGTGATCTGGCGATCAGCTTTTCATAAAAACTACGACACCATCTTGACCGCGATCGACAGTTTTG
ATCTATTACTGCTATTTGACGGTCTCAAAATATGTCTACCCATCCTGTTATTAAACGCTTAGATCACCTTGGTCTCATTGCCGCCTTTTGTCACGAAATT
GGCCTGCCACGGATGATAGATGCCGTTATCCCAAAATATTCTGACCACAATGTTTCTCATGGTGACGCGGTATTGGCCATGCTCCTAAATGGACTTGGCT
TTCATAGCAGAACACTGCACATGTTCTCGGACTTTTTTAAGACCAAGCCTGTATCTAAGCTACTCGCCAAAGACATTGAAGCACACCACCTGACTGATGA
TGTACTAGGCCGCACATTAGATGCTCTATACGAAGCCGATGTCTCAGCGCTCTATCAGGTTATTGCTGAGCGTGTTGTTGATAAACTGGGCTTGACGACC
GATTCTGTTCATCTTGATATCACTAGCTTCCACGTTGATGGTGAGTATGCACAAGATGAAAACACCAACGTGATTAAGCTTGTAAGAGGTTATAGTCGGG
ATCATAGGCCAGAGCTTAACCAAGTCGTGCTTGAACTCATCTGTGAAAACCAAGCAGGTATTCCTGTTTACATGCAAGCACTGAGTGGTAACACCAATGA
TGCCAAGGCATTCGCTGAAGTCACTAAAAGACACATACATTGCCTAAAAGCCGCGCAAAATAGTCGTTACTTTATCGCTGATGCCGCTTTGTACACCGAA
GAAAGCATCTCCTCGCTAGATGAGCAAAATCAAAAATTCATTACCCGTGTCCCCATGACCATCAAGCTCGCAAAACAAGCACTACTTGCGCTAGAGCCAG
AGCAATTAAGCACTATCGGTCATGGCTACTCAGGATGTTGGATAGACTCGGATTACGGAAAGGTCAATCAACGTTGGTTGCTCGTTCACAGTGAACAGGC
CACCAAGCGGGAAGAAATCACTTTCTTCAAGAACTTAGAGAAAAACATAGCAAAAGAAATCAAAGCGTTGGAAAAGCTAAGTAAAAAACCATTCGCTTGT
GAAGTTGACGCAGAATTAGCGTTTAACGATTTCAAGAAACAATGTGACTTACTTGGGTTTGAACAAGGCACTCTCATCAAACAGCCGACTTACTCTCATT
CGGGCCGCCCAAAGACAGATGAAGCACCGACAGGATACCAATACTTTATCGAAGCCGCCCCCTTCACCGACCTAGAAAAAGTAAAACTGGCTAAGCTCAA
AGTAGGCATGTTTATCCTCGCGACGAATGACACCGACAATGAAGCACTCACCATGGCGGCTCTTCTAGCACATTACAAATCGCAACAAAAAGTCGAGCGC
GGCTTCCGTTTTCTAAAAAGCCCTGAGTTTTTAACCTCTTCCATCTTCTTGAAAAAGCCTGAGCGCATTGAAGCGTTGCTAATGATAATGACGTTGAGCT
TGCTTGTTTACGCTAGTTTAGAACACAAAATCAGAGAACAACTCGCACAAACCGAAGCGTTCTTCCCAAGTATGGTAAAGAACAAGACGACCTCCAGACC
GACGGCACGTTGGGTCTTCTTGCAATTCGAAGGCATAGATACGCTAGAGATTAACGGCCAAAGGTTCATCACTGGACTTCAAGATCACCAAACACAACTA
CTCAAATTACTCGGTAGATTCTATGAGGTAGTTTATTCCTAAATTAGCTGCGGAATGTCGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1611 bp536 aa1321742+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSTHPVIKRLDHLGLIAAFCHEIGLPRMIDAVIPKYSDHNVSHGDAVLAMLLNGLGFHSRTLHMFSDFFKTKPVSKLLAKDIEAHHLTDDVLGRTLDALY
EADVSALYQVIAERVVDKLGLTTDSVHLDITSFHVDGEYAQDENTNVIKLVRGYSRDHRPELNQVVLELICENQAGIPVYMQALSGNTNDAKAFAEVTKR
HIHCLKAAQNSRYFIADAALYTEESISSLDEQNQKFITRVPMTIKLAKQALLALEPEQLSTIGHGYSGCWIDSDYGKVNQRWLLVHSEQATKREEITFFK
NLEKNIAKEIKALEKLSKKPFACEVDAELAFNDFKKQCDLLGFEQGTLIKQPTYSHSGRPKTDEAPTGYQYFIEAAPFTDLEKVKLAKLKVGMFILATND
TDNEALTMAALLAHYKSQQKVERGFRFLKSPEFLTSSIFLKKPERIEALLMIMTLSLLVYASLEHKIREQLAQTEAFFPSMVKNKTTSRPTARWVFLQFE
GIDTLEINGQRFITGLQDHQTQLLKLLGRFYEVVYS

 

Blast result :
Comments
ISSPu7 has 66% aa identity to ISPlu4. There are 12 complete copies in the genome of Shewanella putrefaciens W3-18-1.
References
1] Romine, M. (2008) Direct submission.