ISSpu7
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008750 | ND | Shewanella putrefaciens | Shewanella putrefaciens W3-18-1 |
DNA section
IS Length : 1761 bp
Ends
IR Length : 23/27
IRL : CCGTCATTCCGCAGCTAATTCCAGAATTTAAATAGTGTGATCTGGCGATC
IRR : CCGACATTCCGCAGCTAATTTAGGAATAAACTACCTCATAGAATCTACCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTGTAAGCA | TAATA | GTCTATGCCT | 5 |
CGTGTCACTG | GTGTAA | CAGTGCGAAA | 6 |
TTGAAGGTTT | ATTTAT | GGCTTGTTGT | 6 |
ATTACTAGCC | TTAAAA | GAACCATAGA | 6 |
CTTATCAGTG | ATTAC | ATTTATCGCA | 5 |
TTCTGAAGCA | ATACAT | GGTAACCCCC | 6 |
TTTTGGTTTT | TTATAT | CGCTAAACGA | 6 |
CTAGCCTAAG | ATATAC | ACCTGCAATG | 6 |
GCGACTCGAT | TTATAC | CACTCATTTG | 6 |
TAATCCCCTT | TTTTAT | CCCATTTATT | 6 |
ATAGGCACTG | TTGTAT | CCAAATTATT | 6 |
GGAAACACCC | ATAGAT | TAAGTTACTT | 6 |
DNA sequence
CCGTCATTCCGCAGCTAATTCCAGAATTTAAATAGTGTGATCTGGCGATCAGCTTTTCATAAAAACTACGACACCATCTTGACCGCGATCGACAGTTTTG
ATCTATTACTGCTATTTGACGGTCTCAAAATATGTCTACCCATCCTGTTATTAAACGCTTAGATCACCTTGGTCTCATTGCCGCCTTTTGTCACGAAATT
GGCCTGCCACGGATGATAGATGCCGTTATCCCAAAATATTCTGACCACAATGTTTCTCATGGTGACGCGGTATTGGCCATGCTCCTAAATGGACTTGGCT
TTCATAGCAGAACACTGCACATGTTCTCGGACTTTTTTAAGACCAAGCCTGTATCTAAGCTACTCGCCAAAGACATTGAAGCACACCACCTGACTGATGA
TGTACTAGGCCGCACATTAGATGCTCTATACGAAGCCGATGTCTCAGCGCTCTATCAGGTTATTGCTGAGCGTGTTGTTGATAAACTGGGCTTGACGACC
GATTCTGTTCATCTTGATATCACTAGCTTCCACGTTGATGGTGAGTATGCACAAGATGAAAACACCAACGTGATTAAGCTTGTAAGAGGTTATAGTCGGG
ATCATAGGCCAGAGCTTAACCAAGTCGTGCTTGAACTCATCTGTGAAAACCAAGCAGGTATTCCTGTTTACATGCAAGCACTGAGTGGTAACACCAATGA
TGCCAAGGCATTCGCTGAAGTCACTAAAAGACACATACATTGCCTAAAAGCCGCGCAAAATAGTCGTTACTTTATCGCTGATGCCGCTTTGTACACCGAA
GAAAGCATCTCCTCGCTAGATGAGCAAAATCAAAAATTCATTACCCGTGTCCCCATGACCATCAAGCTCGCAAAACAAGCACTACTTGCGCTAGAGCCAG
AGCAATTAAGCACTATCGGTCATGGCTACTCAGGATGTTGGATAGACTCGGATTACGGAAAGGTCAATCAACGTTGGTTGCTCGTTCACAGTGAACAGGC
CACCAAGCGGGAAGAAATCACTTTCTTCAAGAACTTAGAGAAAAACATAGCAAAAGAAATCAAAGCGTTGGAAAAGCTAAGTAAAAAACCATTCGCTTGT
GAAGTTGACGCAGAATTAGCGTTTAACGATTTCAAGAAACAATGTGACTTACTTGGGTTTGAACAAGGCACTCTCATCAAACAGCCGACTTACTCTCATT
CGGGCCGCCCAAAGACAGATGAAGCACCGACAGGATACCAATACTTTATCGAAGCCGCCCCCTTCACCGACCTAGAAAAAGTAAAACTGGCTAAGCTCAA
AGTAGGCATGTTTATCCTCGCGACGAATGACACCGACAATGAAGCACTCACCATGGCGGCTCTTCTAGCACATTACAAATCGCAACAAAAAGTCGAGCGC
GGCTTCCGTTTTCTAAAAAGCCCTGAGTTTTTAACCTCTTCCATCTTCTTGAAAAAGCCTGAGCGCATTGAAGCGTTGCTAATGATAATGACGTTGAGCT
TGCTTGTTTACGCTAGTTTAGAACACAAAATCAGAGAACAACTCGCACAAACCGAAGCGTTCTTCCCAAGTATGGTAAAGAACAAGACGACCTCCAGACC
GACGGCACGTTGGGTCTTCTTGCAATTCGAAGGCATAGATACGCTAGAGATTAACGGCCAAAGGTTCATCACTGGACTTCAAGATCACCAAACACAACTA
CTCAAATTACTCGGTAGATTCTATGAGGTAGTTTATTCCTAAATTAGCTGCGGAATGTCGG
ATCTATTACTGCTATTTGACGGTCTCAAAATATGTCTACCCATCCTGTTATTAAACGCTTAGATCACCTTGGTCTCATTGCCGCCTTTTGTCACGAAATT
GGCCTGCCACGGATGATAGATGCCGTTATCCCAAAATATTCTGACCACAATGTTTCTCATGGTGACGCGGTATTGGCCATGCTCCTAAATGGACTTGGCT
TTCATAGCAGAACACTGCACATGTTCTCGGACTTTTTTAAGACCAAGCCTGTATCTAAGCTACTCGCCAAAGACATTGAAGCACACCACCTGACTGATGA
TGTACTAGGCCGCACATTAGATGCTCTATACGAAGCCGATGTCTCAGCGCTCTATCAGGTTATTGCTGAGCGTGTTGTTGATAAACTGGGCTTGACGACC
GATTCTGTTCATCTTGATATCACTAGCTTCCACGTTGATGGTGAGTATGCACAAGATGAAAACACCAACGTGATTAAGCTTGTAAGAGGTTATAGTCGGG
ATCATAGGCCAGAGCTTAACCAAGTCGTGCTTGAACTCATCTGTGAAAACCAAGCAGGTATTCCTGTTTACATGCAAGCACTGAGTGGTAACACCAATGA
TGCCAAGGCATTCGCTGAAGTCACTAAAAGACACATACATTGCCTAAAAGCCGCGCAAAATAGTCGTTACTTTATCGCTGATGCCGCTTTGTACACCGAA
GAAAGCATCTCCTCGCTAGATGAGCAAAATCAAAAATTCATTACCCGTGTCCCCATGACCATCAAGCTCGCAAAACAAGCACTACTTGCGCTAGAGCCAG
AGCAATTAAGCACTATCGGTCATGGCTACTCAGGATGTTGGATAGACTCGGATTACGGAAAGGTCAATCAACGTTGGTTGCTCGTTCACAGTGAACAGGC
CACCAAGCGGGAAGAAATCACTTTCTTCAAGAACTTAGAGAAAAACATAGCAAAAGAAATCAAAGCGTTGGAAAAGCTAAGTAAAAAACCATTCGCTTGT
GAAGTTGACGCAGAATTAGCGTTTAACGATTTCAAGAAACAATGTGACTTACTTGGGTTTGAACAAGGCACTCTCATCAAACAGCCGACTTACTCTCATT
CGGGCCGCCCAAAGACAGATGAAGCACCGACAGGATACCAATACTTTATCGAAGCCGCCCCCTTCACCGACCTAGAAAAAGTAAAACTGGCTAAGCTCAA
AGTAGGCATGTTTATCCTCGCGACGAATGACACCGACAATGAAGCACTCACCATGGCGGCTCTTCTAGCACATTACAAATCGCAACAAAAAGTCGAGCGC
GGCTTCCGTTTTCTAAAAAGCCCTGAGTTTTTAACCTCTTCCATCTTCTTGAAAAAGCCTGAGCGCATTGAAGCGTTGCTAATGATAATGACGTTGAGCT
TGCTTGTTTACGCTAGTTTAGAACACAAAATCAGAGAACAACTCGCACAAACCGAAGCGTTCTTCCCAAGTATGGTAAAGAACAAGACGACCTCCAGACC
GACGGCACGTTGGGTCTTCTTGCAATTCGAAGGCATAGATACGCTAGAGATTAACGGCCAAAGGTTCATCACTGGACTTCAAGATCACCAAACACAACTA
CTCAAATTACTCGGTAGATTCTATGAGGTAGTTTATTCCTAAATTAGCTGCGGAATGTCGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1611 bp | 536 aa | 132 | 1742 | + | No |
Chemistry : DDE
ORF sequence :
MSTHPVIKRLDHLGLIAAFCHEIGLPRMIDAVIPKYSDHNVSHGDAVLAMLLNGLGFHSRTLHMFSDFFKTKPVSKLLAKDIEAHHLTDDVLGRTLDALY
EADVSALYQVIAERVVDKLGLTTDSVHLDITSFHVDGEYAQDENTNVIKLVRGYSRDHRPELNQVVLELICENQAGIPVYMQALSGNTNDAKAFAEVTKR
HIHCLKAAQNSRYFIADAALYTEESISSLDEQNQKFITRVPMTIKLAKQALLALEPEQLSTIGHGYSGCWIDSDYGKVNQRWLLVHSEQATKREEITFFK
NLEKNIAKEIKALEKLSKKPFACEVDAELAFNDFKKQCDLLGFEQGTLIKQPTYSHSGRPKTDEAPTGYQYFIEAAPFTDLEKVKLAKLKVGMFILATND
TDNEALTMAALLAHYKSQQKVERGFRFLKSPEFLTSSIFLKKPERIEALLMIMTLSLLVYASLEHKIREQLAQTEAFFPSMVKNKTTSRPTARWVFLQFE
GIDTLEINGQRFITGLQDHQTQLLKLLGRFYEVVYS
EADVSALYQVIAERVVDKLGLTTDSVHLDITSFHVDGEYAQDENTNVIKLVRGYSRDHRPELNQVVLELICENQAGIPVYMQALSGNTNDAKAFAEVTKR
HIHCLKAAQNSRYFIADAALYTEESISSLDEQNQKFITRVPMTIKLAKQALLALEPEQLSTIGHGYSGCWIDSDYGKVNQRWLLVHSEQATKREEITFFK
NLEKNIAKEIKALEKLSKKPFACEVDAELAFNDFKKQCDLLGFEQGTLIKQPTYSHSGRPKTDEAPTGYQYFIEAAPFTDLEKVKLAKLKVGMFILATND
TDNEALTMAALLAHYKSQQKVERGFRFLKSPEFLTSSIFLKKPERIEALLMIMTLSLLVYASLEHKIREQLAQTEAFFPSMVKNKTTSRPTARWVFLQFE
GIDTLEINGQRFITGLQDHQTQLLKLLGRFYEVVYS
Blast result :
Comments
ISSPu7 has 66% aa identity to ISPlu4. There are 12 complete copies in the genome of Shewanella putrefaciens W3-18-1.
References
1] Romine, M. (2008) Direct submission.