ISSba8

  • Family IS110
  • Group IS1111
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_009665 ND Shewanella baltica
Shewanella baltica OS223
Shewanella baltica OS195
Shewanella baltica OS185
DNA section
IS Length : 1331 bp

Ends


IR Length : 17/25

IRL : gatgtgATGGACGCCTCAGCACTTAAGCTTGCAGTATTATGCCAAGCTTG
IRR : --atatATGGACGCCTCAGCTTTTACAACACTTTTGAATGATTGGTTCAC

Insertion site


Left flankDirect repeatRight flankDR Length
TGGTTGTAGTGGTCAAGTAA0
ATACTGTAGTGGTCAACTAA0
TGTTTGTAGTGGTCAAGTAA0

DNA sequence

GATGTGATGGACGCCTCAGCACTTAAGCTTGCAGTATTATGCCAAGCTTGAAGCTGATAAATAGTTCAGGAGGTTTCCATCATGGATATTAAAGTTATTG
GTATCGATTTAGCCAAAAATGTTTTTCAAGTTTGTGTTTGTCTTATGGATAACTCAGTCATGAGTAACAAAAAGGTTAACAGAAACAAGCTGCTCGATAA
AATTAGACAATTCCCCGAAGGTAGTCTTATTGCTATGGAGGCCTGTGGAACAGCGCATTACTGGGGAAGACAATTTCAAGCACTTGGTTATCAAGTACAA
CTGATCCCTGCTCAACATGTTAAGCCATTTGTTGCAAACCAAAAGAATGATGCCAACGATGCACTCGCGATATGCGAAGCTGCTTTCAGACCTAATATCC
ATATGGTTCCAGTTAAAACTGTTGAGCAGCAAGACATAAAAGCATTACGTTGTGTACGTAGTCGTCTAGTTCAAAATCGAACCGCCATGGTCAATCAAAT
TCGAAGCCTAGCGAGCGAGTCTGGTGTGATCTTCTCTGTCGGCAGATTGCAATTACAAGCGTCACTTAGCCGTATTTTAGCAGATAATGAGCATGAACTG
TCTCATACGCTTCATCACCTGTTAAAATTTTTGTATGAAGATTTATGTGTTTTAAATGAGAAAATTAATCAAATCGAGCGCGACATTAAAGCACTATGTC
AAATCCAACCTCGCTACAATGCATTGCTGTCGATCCCTGGCTTTGGACCATTAGTCACGGCAAGCTTTATGAGTGAATTAGGTTCGGGTCATCAATTTAA
AAATGGCCGGCAATTATCTGCATGGTGTGGCTTAGTGCCATCACAGTCGAGTTCCGGTGGAAAAGTTCGACTAGGATCGATCACGAAAAATGGCAGCTCA
GAACTACGCGTTTTACTCATCCATGGTGCCAGAGCCGTTGGCCGATTTGCGAGCAAACGTGATGATAGACTTGGACGATGGTTTAATGCGCTTGCGTTAA
GGCAAGGTCGACACAAAGCCGTTGTCGCATTGGCTAATAAAATAGTGCGTATAGGATGGCGGATCCTCACGAGTAACGATAATTTCGACGTTAATAAAGC
GTTTGCGTAAGACGTTAAGTATCACCTAAAAGTTTACATGCACTGATGAATAAACGGTCAACCGTACCTATTAGAGCCTGACTTGACCAAGGCATTAAAT
GCCGATGTAGTGATAAGGTAATAGGTTTCGGATTTACATCATGGCGCGGGTAAAATGCCTATTTAGACGCCGAATATATGGTAGTGAACCAATCATTCAA
AAGTGTTGTAAAAGCTGAGGCGTCCATATAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1029 bp342 aa821110+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

MDIKVIGIDLAKNVFQVCVCLMDNSVMSNKKVNRNKLLDKIRQFPEGSLIAMEACGTAHYWGRQFQALGYQVQLIPAQHVKPFVANQKNDANDALAICEA
AFRPNIHMVPVKTVEQQDIKALRCVRSRLVQNRTAMVNQIRSLASESGVIFSVGRLQLQASLSRILADNEHELSHTLHHLLKFLYEDLCVLNEKINQIER
DIKALCQIQPRYNALLSIPGFGPLVTASFMSELGSGHQFKNGRQLSAWCGLVPSQSSSGGKVRLGSITKNGSSELRVLLIHGARAVGRFASKRDDRLGRW
FNALALRQGRHKAVVALANKIVRIGWRILTSNDNFDVNKAFA

 

Blast result :
Comments
There are 2 copies of ISSba8 on the chromosome and 1 on the plasmid of S. baltica OS185. The inverted repeats start at positions 7 from the 5' end and 5 from the 3' end. The ISSba8 transposase has 56% identity with ISSod21_aa1. The insertion sites in OS185 are highly conserved.
ISSba8 is 71% aa similar to ISSod21.
References
1] Romine, M. (2008) Direct submission.