ISSba8
- Family IS110
- Group IS1111
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_009665 | ND | Shewanella baltica | Shewanella baltica OS223 Shewanella baltica OS195 Shewanella baltica OS185 |
DNA section
IS Length : 1331 bp
Ends
IR Length : 17/25
IRL : gatgtgATGGACGCCTCAGCACTTAAGCTTGCAGTATTATGCCAAGCTTG
IRR : --atatATGGACGCCTCAGCTTTTACAACACTTTTGAATGATTGGTTCAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGGTTGTAGT | GGTCAAGTAA | 0 | |
ATACTGTAGT | GGTCAACTAA | 0 | |
TGTTTGTAGT | GGTCAAGTAA | 0 |
DNA sequence
GATGTGATGGACGCCTCAGCACTTAAGCTTGCAGTATTATGCCAAGCTTGAAGCTGATAAATAGTTCAGGAGGTTTCCATCATGGATATTAAAGTTATTG
GTATCGATTTAGCCAAAAATGTTTTTCAAGTTTGTGTTTGTCTTATGGATAACTCAGTCATGAGTAACAAAAAGGTTAACAGAAACAAGCTGCTCGATAA
AATTAGACAATTCCCCGAAGGTAGTCTTATTGCTATGGAGGCCTGTGGAACAGCGCATTACTGGGGAAGACAATTTCAAGCACTTGGTTATCAAGTACAA
CTGATCCCTGCTCAACATGTTAAGCCATTTGTTGCAAACCAAAAGAATGATGCCAACGATGCACTCGCGATATGCGAAGCTGCTTTCAGACCTAATATCC
ATATGGTTCCAGTTAAAACTGTTGAGCAGCAAGACATAAAAGCATTACGTTGTGTACGTAGTCGTCTAGTTCAAAATCGAACCGCCATGGTCAATCAAAT
TCGAAGCCTAGCGAGCGAGTCTGGTGTGATCTTCTCTGTCGGCAGATTGCAATTACAAGCGTCACTTAGCCGTATTTTAGCAGATAATGAGCATGAACTG
TCTCATACGCTTCATCACCTGTTAAAATTTTTGTATGAAGATTTATGTGTTTTAAATGAGAAAATTAATCAAATCGAGCGCGACATTAAAGCACTATGTC
AAATCCAACCTCGCTACAATGCATTGCTGTCGATCCCTGGCTTTGGACCATTAGTCACGGCAAGCTTTATGAGTGAATTAGGTTCGGGTCATCAATTTAA
AAATGGCCGGCAATTATCTGCATGGTGTGGCTTAGTGCCATCACAGTCGAGTTCCGGTGGAAAAGTTCGACTAGGATCGATCACGAAAAATGGCAGCTCA
GAACTACGCGTTTTACTCATCCATGGTGCCAGAGCCGTTGGCCGATTTGCGAGCAAACGTGATGATAGACTTGGACGATGGTTTAATGCGCTTGCGTTAA
GGCAAGGTCGACACAAAGCCGTTGTCGCATTGGCTAATAAAATAGTGCGTATAGGATGGCGGATCCTCACGAGTAACGATAATTTCGACGTTAATAAAGC
GTTTGCGTAAGACGTTAAGTATCACCTAAAAGTTTACATGCACTGATGAATAAACGGTCAACCGTACCTATTAGAGCCTGACTTGACCAAGGCATTAAAT
GCCGATGTAGTGATAAGGTAATAGGTTTCGGATTTACATCATGGCGCGGGTAAAATGCCTATTTAGACGCCGAATATATGGTAGTGAACCAATCATTCAA
AAGTGTTGTAAAAGCTGAGGCGTCCATATAT
GTATCGATTTAGCCAAAAATGTTTTTCAAGTTTGTGTTTGTCTTATGGATAACTCAGTCATGAGTAACAAAAAGGTTAACAGAAACAAGCTGCTCGATAA
AATTAGACAATTCCCCGAAGGTAGTCTTATTGCTATGGAGGCCTGTGGAACAGCGCATTACTGGGGAAGACAATTTCAAGCACTTGGTTATCAAGTACAA
CTGATCCCTGCTCAACATGTTAAGCCATTTGTTGCAAACCAAAAGAATGATGCCAACGATGCACTCGCGATATGCGAAGCTGCTTTCAGACCTAATATCC
ATATGGTTCCAGTTAAAACTGTTGAGCAGCAAGACATAAAAGCATTACGTTGTGTACGTAGTCGTCTAGTTCAAAATCGAACCGCCATGGTCAATCAAAT
TCGAAGCCTAGCGAGCGAGTCTGGTGTGATCTTCTCTGTCGGCAGATTGCAATTACAAGCGTCACTTAGCCGTATTTTAGCAGATAATGAGCATGAACTG
TCTCATACGCTTCATCACCTGTTAAAATTTTTGTATGAAGATTTATGTGTTTTAAATGAGAAAATTAATCAAATCGAGCGCGACATTAAAGCACTATGTC
AAATCCAACCTCGCTACAATGCATTGCTGTCGATCCCTGGCTTTGGACCATTAGTCACGGCAAGCTTTATGAGTGAATTAGGTTCGGGTCATCAATTTAA
AAATGGCCGGCAATTATCTGCATGGTGTGGCTTAGTGCCATCACAGTCGAGTTCCGGTGGAAAAGTTCGACTAGGATCGATCACGAAAAATGGCAGCTCA
GAACTACGCGTTTTACTCATCCATGGTGCCAGAGCCGTTGGCCGATTTGCGAGCAAACGTGATGATAGACTTGGACGATGGTTTAATGCGCTTGCGTTAA
GGCAAGGTCGACACAAAGCCGTTGTCGCATTGGCTAATAAAATAGTGCGTATAGGATGGCGGATCCTCACGAGTAACGATAATTTCGACGTTAATAAAGC
GTTTGCGTAAGACGTTAAGTATCACCTAAAAGTTTACATGCACTGATGAATAAACGGTCAACCGTACCTATTAGAGCCTGACTTGACCAAGGCATTAAAT
GCCGATGTAGTGATAAGGTAATAGGTTTCGGATTTACATCATGGCGCGGGTAAAATGCCTATTTAGACGCCGAATATATGGTAGTGAACCAATCATTCAA
AAGTGTTGTAAAAGCTGAGGCGTCCATATAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1029 bp | 342 aa | 82 | 1110 | + | No |
Chemistry : DEDD
ORF sequence :
MDIKVIGIDLAKNVFQVCVCLMDNSVMSNKKVNRNKLLDKIRQFPEGSLIAMEACGTAHYWGRQFQALGYQVQLIPAQHVKPFVANQKNDANDALAICEA
AFRPNIHMVPVKTVEQQDIKALRCVRSRLVQNRTAMVNQIRSLASESGVIFSVGRLQLQASLSRILADNEHELSHTLHHLLKFLYEDLCVLNEKINQIER
DIKALCQIQPRYNALLSIPGFGPLVTASFMSELGSGHQFKNGRQLSAWCGLVPSQSSSGGKVRLGSITKNGSSELRVLLIHGARAVGRFASKRDDRLGRW
FNALALRQGRHKAVVALANKIVRIGWRILTSNDNFDVNKAFA
AFRPNIHMVPVKTVEQQDIKALRCVRSRLVQNRTAMVNQIRSLASESGVIFSVGRLQLQASLSRILADNEHELSHTLHHLLKFLYEDLCVLNEKINQIER
DIKALCQIQPRYNALLSIPGFGPLVTASFMSELGSGHQFKNGRQLSAWCGLVPSQSSSGGKVRLGSITKNGSSELRVLLIHGARAVGRFASKRDDRLGRW
FNALALRQGRHKAVVALANKIVRIGWRILTSNDNFDVNKAFA
Blast result :
Comments
There are 2 copies of ISSba8 on the chromosome and 1 on the plasmid of S. baltica OS185. The inverted repeats start at positions 7 from the 5' end and 5 from the 3' end. The ISSba8 transposase has 56% identity with ISSod21_aa1. The insertion sites in OS185 are highly conserved.
ISSba8 is 71% aa similar to ISSod21.
ISSba8 is 71% aa similar to ISSod21.
References
1] Romine, M. (2008) Direct submission.