ISAli8

  • Family IS110
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Azospirillum lipoferum
Azospirillum lipoferum 4B
DNA section
IS Length : 1151 bp

Ends


Left end : TGTATCTGGAATGGGTCCCAGTTTCGTGATGGAACTTGGATAGCGCCGGGTCCGGTGGCCACCGGACCCGGCGCGAGGCGGACGGCGCCCGATGCCCCTC
Right end : CGCGTCGCCCTCGCCAGAAAGCTGCTCGTCAGGCTCAATGCCAAAGCCCGCGAGGTTCGTGCTGGACTCACTGTGGAGGCTTGACAGGCCAGACAGTCGC

Insertion site


Left flankDirect repeatRight flankDR Length
GAAATCAAGGTTCCGCCCCTTCACCCCAACCCCTCTC0

DNA sequence

TGTATCTGGAATGGGTCCCAGTTTCGTGATGGAACTTGGATAGCGCCGGGTCCGGTGGCCACCGGACCCGGCGCGAGGCGGACGGCGCCCGATGCCCCTC
AGGCCACAACCGTGGGTGAGCCATGGGACCGCTGCCTTTGTCACGCACGACCGAACAGTCGCCAGATCGTCCATCGCACGCGCAAGGCAGGTTACCGTGG
CACACCTCATCTGTGGAGTGGATGTTTCGTCCGAGACGCTGGATGCCCGGATCGGCGACAGCGGGCCGATGAAGCGGTTCGACCGTACGTCGGAGGGGAT
CGCGGCATTGGCCGCCTTCTGCCGCGACAATGATGTCACCCTGGTGGCGATGGAGGCCACCGGCGGATACGAACGGCTGCCTTTCGGCCTGCTGTGGGGC
CATGGCTTGCCGGTGGCGGTGCTCAACCCTCGCTCGGTGCGGCAGTTCGCCGAAGCGATGGGCTTCCTGGAGAAGACCGACCGGATCGACGCCGGCCTGA
TCGCCCGCTTTGCCGAGGTCAAGCGCATCACGCCCCAACCGCCGGCCAGCCAGAGCCAGCAACGCCTGCAAGCGCTGGTAACCCGCCTGCGCCAGCTCAC
CCAGACGCGCACGGTGCAGACTAACCAGCGCCGCTTGGTGACCGAGCCTACCGTGCTGGGCTCGATCGACGAGCTCGTCTCGCTGCTCAACCGCCAAATC
CGGGCCTTCGAGACCGAGGTCGCTGCCATGATCGGAAAGGACCCGCTCTGGCAGCGGCTGGACGAGGCGTTCCGAACCATCAAGGGCGTCGCCGACCGCA
CCGTCGCCCGGCTCATGGCCGATCTGCCCGAGATCGGTACCTTGACCGGCAAAGCCGTCGCCAAGCTCGTCGGGGTCGCCCCGCTGGCGCGCGACAGCGG
AAAGGCAACAGGAAAGCGACGGGTACGCGGCGGGCGTGATAGCGTCCGCTCCATCCTCTTCGTCGTCGCCGAGGTCGTCCGAAGACATGACCCCGACTTC
GCTGCCTTCCACAAAAAGTTGAGCGACGCTGGAAAGCCTAAAAAGGCAATCCGCGTCGCCCTCGCCAGAAAGCTGCTCGTCAGGCTCAATGCCAAAGCCC
GCGAGGTTCGTGCTGGACTCACTGTGGAGGCTTGACAGGCCAGACAGTCGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
939 bp312 aa1971135+No
ORF function : Transposase
Chemistry : DEDD

ORF sequence :

VAHLICGVDVSSETLDARIGDSGPMKRFDRTSEGIAALAAFCRDNDVTLVAMEATGGYERLPFGLLWGHGLPVAVLNPRSVRQFAEAMGFLEKTDRIDAG
LIARFAEVKRITPQPPASQSQQRLQALVTRLRQLTQTRTVQTNQRRLVTEPTVLGSIDELVSLLNRQIRAFETEVAAMIGKDPLWQRLDEAFRTIKGVAD
RTVARLMADLPEIGTLTGKAVAKLVGVAPLARDSGKATGKRRVRGGRDSVRSILFVVAEVVRRHDPDFAAFHKKLSDAGKPKKAIRVALARKLLVRLNAK
AREVRAGLTVEA

 

Blast result :
Comments
ISAli8 is 78% aa similar to ISCc2.
References
1] ISfinder annotation (2008)