ISApr5

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABHC01000011 ND Alpha proteobacterium
Alpha proteobacterium BAL199
DNA section
IS Length : 806 bp

Ends


IR Length : 11/12

IRL : GGCGCTGTCACACGAACTCATGGCTGACGCCGGTCGCGGCCGGTAACGTC
IRR : GGCACTGTCACATCTTCGTCGTCCGGGCGCACGAAGCCCAGGTTCTGATC

Insertion site


Left flankDirect repeatRight flankDR Length
ATTGGACCAGCGACGTTCGTAGAG0

DNA sequence

GGCGCTGTCACACGAACTCATGGCTGACGCCGGTCGCGGCCGGTAACGTCGCCTCATGAAGCCGATCTCATACGCCCGATTGCACTATCCATCATCGATC
GTCCAGCACGCCGTCTGGCTGTACCTGCGTTTCAACCTCAGCCTGCGGGACGTGGAGGACCTGCTGGCGGAGCGAGGCCTCGATATCAGCTACGAAACGG
TCCGGCGCTGGGTCGCGCGCTTCGGGCCGGCCTACGCCCGGCGGCTCCGCGCGATGCGACCGCGACCCTGCAACTCCTGGCACTTGGACGAGATGTTCGT
CTCGATCGGCGGCCGAACGATGTACCTATGGCGCGCTGTCGATGCCGAGGGCGAGGTCCTCGATGTCCTGGTGCAGCCGAGACGTGACAAGCGGGCCGCC
CTGAAGCTGATGCGCAGCCTCCTGCGGAAACAGGGCTTCGCGCCGACCTCGATCGTGACTGACAAGCTCCGGTCCTATGGAGCCGCGCTTCGAGAGATTG
GCATGGCCGATCGGCACGCTACCGGCGGCCGGCTGAACAATCGCGCTGAGAATTCACACCAGCCTACCCGCCGACGGGAACGATCGTGGATCGGCTTCAA
GAGACCGGGATCAACTCAGCGCTTCCTCTCTGCTCACGCCGCCGTCTACAACACCTTCAATGTCCAGCGCCATCTGATCTCTCGCAGCACCCTTCGGACC
CTGCGCGGCGAAGCATTCGCTCAATGGCAAGCCGCTGCCGAGGCGGCGTGATCCCAGATCAGAACCTGGGCTTCGTGCGCCCGGACGACGAAGATGTGAC
AGTGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
696 bp231 aa56751+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKPISYARLHYPSSIVQHAVWLYLRFNLSLRDVEDLLAERGLDISYETVRRWVARFGPAYARRLRAMRPRPCNSWHLDEMFVSIGGRTMYLWRAVDAEGE
VLDVLVQPRRDKRAALKLMRSLLRKQGFAPTSIVTDKLRSYGAALREIGMADRHATGGRLNNRAENSHQPTRRRERSWIGFKRPGSTQRFLSAHAAVYNT
FNVQRHLISRSTLRTLRGEAFAQWQAAAEAA

 

Blast result :
Comments
ISApr5 is 65% aa similar to ISRH1.
References
1] Hagstrom,A., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2007) Direct submission GenBank.