ISStau3
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMD00000000 | ND | Stigmatella aurantiaca | Stigmatella aurantiaca DW4/3-1 |
DNA section
IS Length : 1579 bp
Ends
IR Length : 12
IRL : GTAACCGTTCACGGGGCTGGGCCGTCTGAGGGGAGAGCAAGAGCGGACAG
IRR : GTAACCGTTCACCGCCTCAGGCAGCGTTCGCGAGCGGAGGCGTGTCCGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGGGTGGAA | TCTTTCTT | TTAGGTGCGA | 8 |
DNA sequence
GTAACCGTTCACGGGGCTGGGCCGTCTGAGGGGAGAGCAAGAGCGGACAGAGGGCAGAGGGCCCTATCGACAGGGTAGGCAGAGGAGTGTACTACCTATG
AGGTGAGCCCCGTTGACCCCAAAGATGCCCGCATCGCAGAGCTGGAAGCCCAGTTGGCGGAGAGGGACGAGCGCATTGCGCAGCTGATGGCGCTGGTGAG
GGCCCTCACCCAGAGGGTGGCGGAGTTGGAGCAGCGGCTGGCCCAGAACTCCAGCAACTCCTCACGCCCCCCCTCGTCTGATGTGCCTGGCAGCGCGCGC
GCTGGGAAGAAGCCCACGGGGAAGCGCCCCGGCGGCCAGCCCGGGCATAAGAAGCATGAGCGAGCTCTGTTGCCGCCCGAGGCTGTGCAGCACTTCGTGG
AGCTGGTGCCCAAGCAATGCAAGAGCTGTCGGCGACGGTTGGTAAGCCGGGACGCTGAGCCGCAGCGCCATCAAGTCATGGAAGTGCCGCCTCTATCGGC
CATTATCACGGAGTACCGGAGCCACGCGTTGGAGTGCAGCGCGTGCGGCACGGTGACGCGACAGCCGGTGCCTGCGCACGCGCGCAGCGCCTTTGGGGAC
AGGCTGGGTGCCCTGGCCAGCCTCTTGGTGGGCAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTTTCGGACATGCTGGGTGTCGAGCTGTCTG
TAGGCAGCGTGGTCAACCTCGAAGAGGAGATGGCCAAAGCGCTGGCGCCCGCAGTGCTCCAGGCCTCCCAGTACGTGCAGGCAGCCGACACGGTCCATGC
GGATGAGACCGGGTGGGTGGAGGGACGTGAGGACGGGCGGGGCAAGCGAGCCTGGCTGTGGATGGCGGCCACCGCGCGGGTAGCCCTCTTTCATATCGCC
AAGAGTCGAGGCGGCAAGGTGGCGCGGGCCCTGCTGGGGGAGGACTTCACCGGCTTCCTCGTCAGCGACAGGTGGAGCGGCTACGCGTGGCACGACGCGG
GCCTGCGGCAGGTGTGCTGGGCCCACCTCACCCGCGACTTCCAAGGCTTCATCGACCGCAGTGGCAAGGGAGGCCGCCTGGGCAAGAAGCTGATGCGCCA
GAGAAACCTCTTCTTCACCTGGTACCACCGCGTGCGCGATGGAACCCTGTCTCGCCACGAGTTCGAAAAGAGGATGCCTGAAGTGGAGCGCGAGGTGGGG
CGACTGCTGCGCCGTGCCGCGCTGCGCGCGGAGAAGAAGACGGCCGGCATGGCCCGGGAGATTCTCCAGTGGGAGAAGTGCCTGTGGACGTTTGTCGACG
TGCCGGGCCTGGAGCCGACCAACAACTTCGGCGAGAGGTGCCTGCGTCACGCCGTCATGTACAGGAAGACTTCCTTCGGGACGCAAGGCCCCCAGGGCAG
CCGCTTTGTGGAACGGATCCTCACAGCTGTTACTTCCCTCAAGCTACAGCGGCGCGGCGTGCTGACCTTCCTGACCGACACGCTGCACGCGCACCGACAT
GGCCTCCCGACGCCCTCGCTGCTGCCCATTGCGGACACGCCTCCGCTCGCGAACGCTGCCTGAGGCGGTGAACGGTTAC
AGGTGAGCCCCGTTGACCCCAAAGATGCCCGCATCGCAGAGCTGGAAGCCCAGTTGGCGGAGAGGGACGAGCGCATTGCGCAGCTGATGGCGCTGGTGAG
GGCCCTCACCCAGAGGGTGGCGGAGTTGGAGCAGCGGCTGGCCCAGAACTCCAGCAACTCCTCACGCCCCCCCTCGTCTGATGTGCCTGGCAGCGCGCGC
GCTGGGAAGAAGCCCACGGGGAAGCGCCCCGGCGGCCAGCCCGGGCATAAGAAGCATGAGCGAGCTCTGTTGCCGCCCGAGGCTGTGCAGCACTTCGTGG
AGCTGGTGCCCAAGCAATGCAAGAGCTGTCGGCGACGGTTGGTAAGCCGGGACGCTGAGCCGCAGCGCCATCAAGTCATGGAAGTGCCGCCTCTATCGGC
CATTATCACGGAGTACCGGAGCCACGCGTTGGAGTGCAGCGCGTGCGGCACGGTGACGCGACAGCCGGTGCCTGCGCACGCGCGCAGCGCCTTTGGGGAC
AGGCTGGGTGCCCTGGCCAGCCTCTTGGTGGGCAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTTTCGGACATGCTGGGTGTCGAGCTGTCTG
TAGGCAGCGTGGTCAACCTCGAAGAGGAGATGGCCAAAGCGCTGGCGCCCGCAGTGCTCCAGGCCTCCCAGTACGTGCAGGCAGCCGACACGGTCCATGC
GGATGAGACCGGGTGGGTGGAGGGACGTGAGGACGGGCGGGGCAAGCGAGCCTGGCTGTGGATGGCGGCCACCGCGCGGGTAGCCCTCTTTCATATCGCC
AAGAGTCGAGGCGGCAAGGTGGCGCGGGCCCTGCTGGGGGAGGACTTCACCGGCTTCCTCGTCAGCGACAGGTGGAGCGGCTACGCGTGGCACGACGCGG
GCCTGCGGCAGGTGTGCTGGGCCCACCTCACCCGCGACTTCCAAGGCTTCATCGACCGCAGTGGCAAGGGAGGCCGCCTGGGCAAGAAGCTGATGCGCCA
GAGAAACCTCTTCTTCACCTGGTACCACCGCGTGCGCGATGGAACCCTGTCTCGCCACGAGTTCGAAAAGAGGATGCCTGAAGTGGAGCGCGAGGTGGGG
CGACTGCTGCGCCGTGCCGCGCTGCGCGCGGAGAAGAAGACGGCCGGCATGGCCCGGGAGATTCTCCAGTGGGAGAAGTGCCTGTGGACGTTTGTCGACG
TGCCGGGCCTGGAGCCGACCAACAACTTCGGCGAGAGGTGCCTGCGTCACGCCGTCATGTACAGGAAGACTTCCTTCGGGACGCAAGGCCCCCAGGGCAG
CCGCTTTGTGGAACGGATCCTCACAGCTGTTACTTCCCTCAAGCTACAGCGGCGCGGCGTGCTGACCTTCCTGACCGACACGCTGCACGCGCACCGACAT
GGCCTCCCGACGCCCTCGCTGCTGCCCATTGCGGACACGCCTCCGCTCGCGAACGCTGCCTGAGGCGGTGAACGGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1461 bp | 486 aa | 103 | 1563 | + | No |
Chemistry : DDE
ORF sequence :
VSPVDPKDARIAELEAQLAERDERIAQLMALVRALTQRVAELEQRLAQNSSNSSRPPSSDVPGSARAGKKPTGKRPGGQPGHKKHERALLPPEAVQHFVE
LVPKQCKSCRRRLVSRDAEPQRHQVMEVPPLSAIITEYRSHALECSACGTVTRQPVPAHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELSV
GSVVNLEEEMAKALAPAVLQASQYVQAADTVHADETGWVEGREDGRGKRAWLWMAATARVALFHIAKSRGGKVARALLGEDFTGFLVSDRWSGYAWHDAG
LRQVCWAHLTRDFQGFIDRSGKGGRLGKKLMRQRNLFFTWYHRVRDGTLSRHEFEKRMPEVEREVGRLLRRAALRAEKKTAGMAREILQWEKCLWTFVDV
PGLEPTNNFGERCLRHAVMYRKTSFGTQGPQGSRFVERILTAVTSLKLQRRGVLTFLTDTLHAHRHGLPTPSLLPIADTPPLANAA
LVPKQCKSCRRRLVSRDAEPQRHQVMEVPPLSAIITEYRSHALECSACGTVTRQPVPAHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELSV
GSVVNLEEEMAKALAPAVLQASQYVQAADTVHADETGWVEGREDGRGKRAWLWMAATARVALFHIAKSRGGKVARALLGEDFTGFLVSDRWSGYAWHDAG
LRQVCWAHLTRDFQGFIDRSGKGGRLGKKLMRQRNLFFTWYHRVRDGTLSRHEFEKRMPEVEREVGRLLRRAALRAEKKTAGMAREILQWEKCLWTFVDV
PGLEPTNNFGERCLRHAVMYRKTSFGTQGPQGSRFVERILTAVTSLKLQRRGVLTFLTDTLHAHRHGLPTPSLLPIADTPPLANAA
Blast result :
Comments
ISStau3 is 72% aa similar to ISStau2.
References
1] ISfinder annotation (2008).
2] Nierman,W.C. (2006) Direct Submission GenBank.
2] Nierman,W.C. (2006) Direct Submission GenBank.