ISStau3

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMD00000000 ND Stigmatella aurantiaca
Stigmatella aurantiaca DW4/3-1
DNA section
IS Length : 1579 bp

Ends


IR Length : 12

IRL : GTAACCGTTCACGGGGCTGGGCCGTCTGAGGGGAGAGCAAGAGCGGACAG
IRR : GTAACCGTTCACCGCCTCAGGCAGCGTTCGCGAGCGGAGGCGTGTCCGCA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGGGTGGAATCTTTCTTTTAGGTGCGA8

DNA sequence

GTAACCGTTCACGGGGCTGGGCCGTCTGAGGGGAGAGCAAGAGCGGACAGAGGGCAGAGGGCCCTATCGACAGGGTAGGCAGAGGAGTGTACTACCTATG
AGGTGAGCCCCGTTGACCCCAAAGATGCCCGCATCGCAGAGCTGGAAGCCCAGTTGGCGGAGAGGGACGAGCGCATTGCGCAGCTGATGGCGCTGGTGAG
GGCCCTCACCCAGAGGGTGGCGGAGTTGGAGCAGCGGCTGGCCCAGAACTCCAGCAACTCCTCACGCCCCCCCTCGTCTGATGTGCCTGGCAGCGCGCGC
GCTGGGAAGAAGCCCACGGGGAAGCGCCCCGGCGGCCAGCCCGGGCATAAGAAGCATGAGCGAGCTCTGTTGCCGCCCGAGGCTGTGCAGCACTTCGTGG
AGCTGGTGCCCAAGCAATGCAAGAGCTGTCGGCGACGGTTGGTAAGCCGGGACGCTGAGCCGCAGCGCCATCAAGTCATGGAAGTGCCGCCTCTATCGGC
CATTATCACGGAGTACCGGAGCCACGCGTTGGAGTGCAGCGCGTGCGGCACGGTGACGCGACAGCCGGTGCCTGCGCACGCGCGCAGCGCCTTTGGGGAC
AGGCTGGGTGCCCTGGCCAGCCTCTTGGTGGGCAAGTACCGGCTGTCCAAGCGGCTGGTGAAGGACGCGCTTTCGGACATGCTGGGTGTCGAGCTGTCTG
TAGGCAGCGTGGTCAACCTCGAAGAGGAGATGGCCAAAGCGCTGGCGCCCGCAGTGCTCCAGGCCTCCCAGTACGTGCAGGCAGCCGACACGGTCCATGC
GGATGAGACCGGGTGGGTGGAGGGACGTGAGGACGGGCGGGGCAAGCGAGCCTGGCTGTGGATGGCGGCCACCGCGCGGGTAGCCCTCTTTCATATCGCC
AAGAGTCGAGGCGGCAAGGTGGCGCGGGCCCTGCTGGGGGAGGACTTCACCGGCTTCCTCGTCAGCGACAGGTGGAGCGGCTACGCGTGGCACGACGCGG
GCCTGCGGCAGGTGTGCTGGGCCCACCTCACCCGCGACTTCCAAGGCTTCATCGACCGCAGTGGCAAGGGAGGCCGCCTGGGCAAGAAGCTGATGCGCCA
GAGAAACCTCTTCTTCACCTGGTACCACCGCGTGCGCGATGGAACCCTGTCTCGCCACGAGTTCGAAAAGAGGATGCCTGAAGTGGAGCGCGAGGTGGGG
CGACTGCTGCGCCGTGCCGCGCTGCGCGCGGAGAAGAAGACGGCCGGCATGGCCCGGGAGATTCTCCAGTGGGAGAAGTGCCTGTGGACGTTTGTCGACG
TGCCGGGCCTGGAGCCGACCAACAACTTCGGCGAGAGGTGCCTGCGTCACGCCGTCATGTACAGGAAGACTTCCTTCGGGACGCAAGGCCCCCAGGGCAG
CCGCTTTGTGGAACGGATCCTCACAGCTGTTACTTCCCTCAAGCTACAGCGGCGCGGCGTGCTGACCTTCCTGACCGACACGCTGCACGCGCACCGACAT
GGCCTCCCGACGCCCTCGCTGCTGCCCATTGCGGACACGCCTCCGCTCGCGAACGCTGCCTGAGGCGGTGAACGGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1461 bp486 aa1031563+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VSPVDPKDARIAELEAQLAERDERIAQLMALVRALTQRVAELEQRLAQNSSNSSRPPSSDVPGSARAGKKPTGKRPGGQPGHKKHERALLPPEAVQHFVE
LVPKQCKSCRRRLVSRDAEPQRHQVMEVPPLSAIITEYRSHALECSACGTVTRQPVPAHARSAFGDRLGALASLLVGKYRLSKRLVKDALSDMLGVELSV
GSVVNLEEEMAKALAPAVLQASQYVQAADTVHADETGWVEGREDGRGKRAWLWMAATARVALFHIAKSRGGKVARALLGEDFTGFLVSDRWSGYAWHDAG
LRQVCWAHLTRDFQGFIDRSGKGGRLGKKLMRQRNLFFTWYHRVRDGTLSRHEFEKRMPEVEREVGRLLRRAALRAEKKTAGMAREILQWEKCLWTFVDV
PGLEPTNNFGERCLRHAVMYRKTSFGTQGPQGSRFVERILTAVTSLKLQRRGVLTFLTDTLHAHRHGLPTPSLLPIADTPPLANAA

 

Blast result :
Comments
ISStau3 is 72% aa similar to ISStau2.
References
1] ISfinder annotation (2008).
2] Nierman,W.C. (2006) Direct Submission GenBank.