ISGth1
- Family IS982
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009328 | ND | Geobacillus thermodenitrificans | Geobacillus thermodenitrificans NG80-2 |
DNA section
IS Length : 1001 bp
Ends
IR Length : 14
IRL : ACCCGTGGTGCTAGATAAAATCAGACAAGCATAAAAATAGCCCTTGCATG
IRR : ACCCGTGGTGCTAGTTGAGTCTTAACGCTCAACTAGCCCAAGAACAACAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ATAGTGTTAT | ATATATTTA | TTATTTATTT | 9 |
DNA sequence
ACCCGTGGTGCTAGATAAAATCAGACAAGCATAAAAATAGCCCTTGCATGAGGATCTCCTTAAAATGAAAGTGCGACCAAACATTTAAAAGGAGAATTCA
CATGCAAGAGCACTTTCATTTTACAACAGATCGAGCCAAACTTCAAAAACAATATGTATCGATTTTGTGTTTTGTATCAGCTCAACTATCGAGTATCCAG
ATTCATCTTCAACGTCGAAATCTTCATTTGTTGAAACAGAAGGACGAGGTCATCATCGCCGTCCATGTCCTTGGAAAGTTGTTAGGCTTCACTTCCGAAC
GGGCTTGGCATCGGTTTGTGATCGGGAATTTGTTTTCCAAGGACTTGTTCCCTGAACGTTCTCGATACAACCGTCACTGCCGAGCGCTTGGCTTTGCGAT
CAAGTGGATGCGGCACCAGCTGGCCAAGCGCGGGCAGCACCATGCGTATGCGGTCGTGGACAGTTTGCCGATCGAGCTGTGTCATTCATCCCGAATGTAT
CGCGCCAAACGGTTTCGTGGAATTGCGGATATTGGCTATTGTGCTTCGAAAAAGATCGCTTTCTATGGGTTGAAACTTCATCTGCAGGTCACCGACCAAG
GGCTTCCGATGGGATATGTCGTCACTGAAGCGTCTTGTCACGATCGGGTGGCCGCTGAAACCGTCATGACGCAAATTCCACATCCATATAACCTAGGTGA
CAAAGGGTACATCAGCCAAAAACTGCAAAAGAAGCTGTACGAAGAGCATCGAGTCGCTTTTTGGACGCCCGTTCGAAAAAATCAGCGAATTCTCCAATCC
GACGCATGGAAACAGTGGATGAAACGAAAACGCAAAGTGATTGAAACCGTGTTTTCGATTTTAGTCGATTCGTATCGGATCACCGAGATTCGAGCGAACT
CGGTTTCTGGATTTGAAACGGCACTGGATGGTATTTTACTGGCTTACTCCCTTGTTGTTCTTGGGCTAGTTGAGCGTTAAGACTCAACTAGCACCACGGG
T
CATGCAAGAGCACTTTCATTTTACAACAGATCGAGCCAAACTTCAAAAACAATATGTATCGATTTTGTGTTTTGTATCAGCTCAACTATCGAGTATCCAG
ATTCATCTTCAACGTCGAAATCTTCATTTGTTGAAACAGAAGGACGAGGTCATCATCGCCGTCCATGTCCTTGGAAAGTTGTTAGGCTTCACTTCCGAAC
GGGCTTGGCATCGGTTTGTGATCGGGAATTTGTTTTCCAAGGACTTGTTCCCTGAACGTTCTCGATACAACCGTCACTGCCGAGCGCTTGGCTTTGCGAT
CAAGTGGATGCGGCACCAGCTGGCCAAGCGCGGGCAGCACCATGCGTATGCGGTCGTGGACAGTTTGCCGATCGAGCTGTGTCATTCATCCCGAATGTAT
CGCGCCAAACGGTTTCGTGGAATTGCGGATATTGGCTATTGTGCTTCGAAAAAGATCGCTTTCTATGGGTTGAAACTTCATCTGCAGGTCACCGACCAAG
GGCTTCCGATGGGATATGTCGTCACTGAAGCGTCTTGTCACGATCGGGTGGCCGCTGAAACCGTCATGACGCAAATTCCACATCCATATAACCTAGGTGA
CAAAGGGTACATCAGCCAAAAACTGCAAAAGAAGCTGTACGAAGAGCATCGAGTCGCTTTTTGGACGCCCGTTCGAAAAAATCAGCGAATTCTCCAATCC
GACGCATGGAAACAGTGGATGAAACGAAAACGCAAAGTGATTGAAACCGTGTTTTCGATTTTAGTCGATTCGTATCGGATCACCGAGATTCGAGCGAACT
CGGTTTCTGGATTTGAAACGGCACTGGATGGTATTTTACTGGCTTACTCCCTTGTTGTTCTTGGGCTAGTTGAGCGTTAAGACTCAACTAGCACCACGGG
T
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 879 bp | 292 aa | 102 | 980 | + | No |
Chemistry : DDE
ORF sequence :
MQEHFHFTTDRAKLQKQYVSILCFVSAQLSSIQIHLQRRNLHLLKQKDEVIIAVHVLGKLLGFTSERAWHRFVIGNLFSKDLFPERSRYNRHCRALGFAI
KWMRHQLAKRGQHHAYAVVDSLPIELCHSSRMYRAKRFRGIADIGYCASKKIAFYGLKLHLQVTDQGLPMGYVVTEASCHDRVAAETVMTQIPHPYNLGD
KGYISQKLQKKLYEEHRVAFWTPVRKNQRILQSDAWKQWMKRKRKVIETVFSILVDSYRITEIRANSVSGFETALDGILLAYSLVVLGLVER
KWMRHQLAKRGQHHAYAVVDSLPIELCHSSRMYRAKRFRGIADIGYCASKKIAFYGLKLHLQVTDQGLPMGYVVTEASCHDRVAAETVMTQIPHPYNLGD
KGYISQKLQKKLYEEHRVAFWTPVRKNQRILQSDAWKQWMKRKRKVIETVFSILVDSYRITEIRANSVSGFETALDGILLAYSLVVLGLVER
Blast result :
Comments
ISGth1 is 88% aa similar to ISGsp1.
References
1] Feng,L., Wang,W., Cheng,J., Ren,Y., Zhao,G., Gao,C., Tang,Y., Liu,X., Han,W., Peng,X., Liu,R. and Wang,L. (2007) Proc. Natl. Acad. Sci. U.S.A. (2007) Mar 27;104(13):5602-7
2] Wang,L., Feng,L., Wang,W., Cheng,J., Ren,Y., Zhao,G. and Gao,C. (2007) Direct Submission GenBank.
2] Wang,L., Feng,L., Wang,W., Cheng,J., Ren,Y., Zhao,G. and Gao,C. (2007) Direct Submission GenBank.