ISDds5

  • Family IS982
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Deinococcus deserti
Deinococcus deserti VCD115 Plasmid III
DNA section
IS Length : 845 bp

Ends


IR Length : 19/24

IRL : ACCCCGTTTAGGGCCTGAATCAGGGCAGCTGGTTCACCTGTAGGTCAATA
IRR : ACCCCGTTTAGCGGTGCATGAGGTTGTGGGCGAGTACGGCCAGGACGACG

Insertion site


Left flankDirect repeatRight flankDR Length
TTCTGGAACCAGACTCTCTGGAAGTTTGGTCCCGGTCA6

DNA sequence

ACCCCGTTTAGGGCCTGAATCAGGGCAGCTGGTTCACCTGTAGGTCAATAAAAATGGAGTCGGTATGGCTAGATACCGACTCCACCACAGTTTAGGCCGT
CGTCGCGTCATCCGCACCCTCTGGCGTTGGGGCAGAAAGCATTTCAGCGACCATAGGAGCTGCCGGCATCAGAAGGTGACAGATGCATTCCTCGTCGCGC
TTCTCCTGTCGCGGTATGTCTTCAAACATCCGTACCCGTCCATCTGGTGGAACATCCTGAGGGAAGACCGGCCCGGTCTTCCCAGTTACACCCAGGCGTT
CACCCGCGGCCAGCGTCTCCTGGAGCATCTTGAGGCTCTCGTCAGTCCACCTTTGCCCTGTACAGATGTCGTGGTGGACTCCATGCCACTCCCGGTGTGT
CGTCCAAAACGAGGGAAACGCTGCGCGTTTCCTGGTGCGCGGTGGGGCTACGGGACCCAGGGCGATTTCTTCGGCTTCAAACTCCACGCCTGGGTCTCAC
CCGCTGGCCAAGTGATGCAGTACCTCATCCGACCAGCCAACCTGCACGACACGACCGTCGCCTACGAGCTCAACCGACGCTGGGCGGACTTCGGCGGACC
CCGAGTGATCGGGGATAAGGGGTACTGCGCGTTGGGGTTCATCTATCCACCCAAGAAAAATACGCGCTACGACACCAGGTGGCGGGAAGACCACCATCCG
AAATTACGTAAACGCATCGAAACCGTGTTCTCTCAGTTGGTGGAAGCCCAGGTTCGTTCCGTTCAGTCTAAAACCCTGACCTCATTGCGGCTCCGCGTCG
TCCTGGCCGTACTCGCCCACAACCTCATGCACCGCTAAACGGGGT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
774 bp257 aa65838+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MARYRLHHSLGRRRVIRTLWRWGRKHFSDHRSCRHQKVTDAFLVALLLSRYVFKHPYPSIWWNILREDRPGLPSYTQAFTRGQRLLEHLEALVSPPLPCT
DVVVDSMPLPVCRPKRGKRCAFPGARWGYGTQGDFFGFKLHAWVSPAGQVMQYLIRPANLHDTTVAYELNRRWADFGGPRVIGDKGYCALGFIYPPKKNT
RYDTRWREDHHPKLRKRIETVFSQLVEAQVRSVQSKTLTSLRLRVVLAVLAHNLMHR

 

Blast result :
Comments
ISDds5 is 92% aa similar to ISDds4.
References
1] Siguier, P. (2008) ISfinder annotation.