ISDds5
- Family IS982
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Deinococcus deserti | Deinococcus deserti VCD115 Plasmid III |
DNA section
IS Length : 845 bp
Ends
IR Length : 19/24
IRL : ACCCCGTTTAGGGCCTGAATCAGGGCAGCTGGTTCACCTGTAGGTCAATA
IRR : ACCCCGTTTAGCGGTGCATGAGGTTGTGGGCGAGTACGGCCAGGACGACG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCTGGAACCAGACTCT | CTGGAA | GTTTGGTCCCGGTCA | 6 |
DNA sequence
ACCCCGTTTAGGGCCTGAATCAGGGCAGCTGGTTCACCTGTAGGTCAATAAAAATGGAGTCGGTATGGCTAGATACCGACTCCACCACAGTTTAGGCCGT
CGTCGCGTCATCCGCACCCTCTGGCGTTGGGGCAGAAAGCATTTCAGCGACCATAGGAGCTGCCGGCATCAGAAGGTGACAGATGCATTCCTCGTCGCGC
TTCTCCTGTCGCGGTATGTCTTCAAACATCCGTACCCGTCCATCTGGTGGAACATCCTGAGGGAAGACCGGCCCGGTCTTCCCAGTTACACCCAGGCGTT
CACCCGCGGCCAGCGTCTCCTGGAGCATCTTGAGGCTCTCGTCAGTCCACCTTTGCCCTGTACAGATGTCGTGGTGGACTCCATGCCACTCCCGGTGTGT
CGTCCAAAACGAGGGAAACGCTGCGCGTTTCCTGGTGCGCGGTGGGGCTACGGGACCCAGGGCGATTTCTTCGGCTTCAAACTCCACGCCTGGGTCTCAC
CCGCTGGCCAAGTGATGCAGTACCTCATCCGACCAGCCAACCTGCACGACACGACCGTCGCCTACGAGCTCAACCGACGCTGGGCGGACTTCGGCGGACC
CCGAGTGATCGGGGATAAGGGGTACTGCGCGTTGGGGTTCATCTATCCACCCAAGAAAAATACGCGCTACGACACCAGGTGGCGGGAAGACCACCATCCG
AAATTACGTAAACGCATCGAAACCGTGTTCTCTCAGTTGGTGGAAGCCCAGGTTCGTTCCGTTCAGTCTAAAACCCTGACCTCATTGCGGCTCCGCGTCG
TCCTGGCCGTACTCGCCCACAACCTCATGCACCGCTAAACGGGGT
CGTCGCGTCATCCGCACCCTCTGGCGTTGGGGCAGAAAGCATTTCAGCGACCATAGGAGCTGCCGGCATCAGAAGGTGACAGATGCATTCCTCGTCGCGC
TTCTCCTGTCGCGGTATGTCTTCAAACATCCGTACCCGTCCATCTGGTGGAACATCCTGAGGGAAGACCGGCCCGGTCTTCCCAGTTACACCCAGGCGTT
CACCCGCGGCCAGCGTCTCCTGGAGCATCTTGAGGCTCTCGTCAGTCCACCTTTGCCCTGTACAGATGTCGTGGTGGACTCCATGCCACTCCCGGTGTGT
CGTCCAAAACGAGGGAAACGCTGCGCGTTTCCTGGTGCGCGGTGGGGCTACGGGACCCAGGGCGATTTCTTCGGCTTCAAACTCCACGCCTGGGTCTCAC
CCGCTGGCCAAGTGATGCAGTACCTCATCCGACCAGCCAACCTGCACGACACGACCGTCGCCTACGAGCTCAACCGACGCTGGGCGGACTTCGGCGGACC
CCGAGTGATCGGGGATAAGGGGTACTGCGCGTTGGGGTTCATCTATCCACCCAAGAAAAATACGCGCTACGACACCAGGTGGCGGGAAGACCACCATCCG
AAATTACGTAAACGCATCGAAACCGTGTTCTCTCAGTTGGTGGAAGCCCAGGTTCGTTCCGTTCAGTCTAAAACCCTGACCTCATTGCGGCTCCGCGTCG
TCCTGGCCGTACTCGCCCACAACCTCATGCACCGCTAAACGGGGT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
774 bp | 257 aa | 65 | 838 | + | No |
Chemistry : DDE
ORF sequence :
MARYRLHHSLGRRRVIRTLWRWGRKHFSDHRSCRHQKVTDAFLVALLLSRYVFKHPYPSIWWNILREDRPGLPSYTQAFTRGQRLLEHLEALVSPPLPCT
DVVVDSMPLPVCRPKRGKRCAFPGARWGYGTQGDFFGFKLHAWVSPAGQVMQYLIRPANLHDTTVAYELNRRWADFGGPRVIGDKGYCALGFIYPPKKNT
RYDTRWREDHHPKLRKRIETVFSQLVEAQVRSVQSKTLTSLRLRVVLAVLAHNLMHR
DVVVDSMPLPVCRPKRGKRCAFPGARWGYGTQGDFFGFKLHAWVSPAGQVMQYLIRPANLHDTTVAYELNRRWADFGGPRVIGDKGYCALGFIYPPKKNT
RYDTRWREDHHPKLRKRIETVFSQLVEAQVRSVQSKTLTSLRLRVVLAVLAHNLMHR
Blast result :
Comments
ISDds5 is 92% aa similar to ISDds4.
References
1] Siguier, P. (2008) ISfinder annotation.