ISAli1

  • Family IS5
  • Group IS1031
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Azospirillum lipoferum
Azospirillum lipoferum 4B plasmid p4AZO 551
Azospirillum lipoferum 4B
DNA section
IS Length : 933 bp

Ends


IR Length : 11/15

IRL : GAGCCTGACCCGAAAAGAATTGAGTGATTTCAGTCTCTTGTGATTCGATC
IRR : GAGTCCGACTCGGAATCGGCAAAGCTGTGTCTATGTTCGAGCCACCCGTC

Insertion site


Left flankDirect repeatRight flankDR Length
CATGAGGAAGTGTTAGTGATTGGAAGACTGGC3

DNA sequence

GAGCCTGACCCGAAAAGAATTGAGTGATTTCAGTCTCTTGTGATTCGATCGATGTTGCGAAGCATGACGAATGACAAGACAATGTGGACTGAAATCACCC
GAGCGCAGTATCAGCGAAAAGGATTGAGGTATTCAAGCGACACGACGGACGCGGAGTGGGCGGTGCTCGAACCACTCCTCCCGGCGGCTCGACGCTTGGG
ACGGCCGCGAACGGTCAACGTGCGCGAGATCGTGAACGGCATCCTCTTTCTGGCGACCTCCGGGTGCCAGTGGCGGCAACTGCCGAAGGATTTCCCGCCG
ATGACGACGGTCCAGCGCTATTTCTACCGCTGGCGCGACGATGGGACCTGGGAGACGATCAATCACGCCTTGGTGGCGATGGTTCGGGAAAGCATGGGAC
GGGAGGCCAGCCCGACAGCGGGGGTGATCGACAGCCAGTCGGTCAAGACGACGGAAGCAGGTGGCCCCCGTGGCTACGACGCGGGCAAGTGCATCAAGGG
GCGCAAGCGGCATGTGTTGACCGACACCAATGGCTTGCTGGTCGCCGCCATCGTTCATGCCGCCGACATCCAGGACCGTGATGGCGCCCCAGCGCTCCTC
GCCTCCGTTCGCACGCTCTTCCCCTGGCTTCGCCACGTCTTCGCGGACGGCAGCTACGCTGGACCCAAGCTGGAAACCGCTTTGGCTCAGATCGGGACAT
GGACTCTGGAGATCGTCAAGCGGTCCGACGCCGCCAAAGGCTTTGAACTGCTGCCTCGGCGGTGGGTCGTTGAGCGTACAATCGCTTGGCTTAACCGCAA
TCGCCGCCTCGCCAAGGACTTCGAGGCCACCGTCGAGAGTGCCGTCGCCTGGGTCTTCATCGCCAGCGTCAAACTGCTCTCAAGACGGGTGGCTCGAACA
TAGACACAGCTTTGCCGATTCCGAGTCGGACTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
864 bp287 aa40903+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VIRSMLRSMTNDKTMWTEITRAQYQRKGLRYSSDTTDAEWAVLEPLLPAARRLGRPRTVNVREIVNGILFLATSGCQWRQLPKDFPPMTTVQRYFYRWRD
DGTWETINHALVAMVRESMGREASPTAGVIDSQSVKTTEAGGPRGYDAGKCIKGRKRHVLTDTNGLLVAAIVHAADIQDRDGAPALLASVRTLFPWLRHV
FADGSYAGPKLETALAQIGTWTLEIVKRSDAAKGFELLPRRWVVERTIAWLNRNRRLAKDFEATVESAVAWVFIASVKLLSRRVART

 

Blast result :
Comments
ISAli1 is 80% aa similar to ISRtr4.
References
1] ISfinder annotation (2008).