ISCpe4
- Family IS200/IS605
- Group IS1341
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_008262 | ND | Clostridium perfringens | Clostridium perfringens SM101 |
DNA section
IS Length : 1655 bp
Ends
Left end : GATTATATTAGTAAACATTATAAACCAAAAGAATTTACAGAATTATTAAATGTATAAGTTATTACACTGCAAAGTTTAGATATTTGTGGAAAATTAAAAG II struct. : No
Right end : TGGAGAGCCATAAAAAATCGTAGTAGCTTAGGCAAGGCGAGGTTCTATGAAGAAGGAAAATTCTCAATATGGATATGTTTGACCATATTTTGAGTAGCAG II struct. : No
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TATAATCACTTCCTT | TTTGT | GAAAATCTACGATTA |
DNA sequence
GATTATATTAGTAAACATTATAAACCAAAAGAATTTACAGAATTATTAAATGTATAAGTTATTACACTGCAAAGTTTAGATATTTGTGGAAAATTAAAAG
TGTTAAGAACTTCTATAAATAGAAGATATTAAACTTATGAATAGTATCTTTAGTATATAGGAATACATAAAGAAACAGGTAGTAGAAAAAATAGTTATTT
ATACATTCATTTCAACTTCTTACCTAAAATACAATCTAAAAAATTAAATTGTATTTCTTAGATAATATTATAATGATAAAGGAATAATATTAGATGAAGT
TATTGAGGATTTTTTTTAAGATTATGGAGGATGAAGTAGTTGAAAAGAGCGTATAAGATAGAGATTAATCCTACTGATGAACAAATGTTTAAAATACAAC
AAACTATTGGGGTATCAAGATTTGTCTATAACCTTTATATTGCTCGTAATAAAGAGATTTACGAGAAAGAAGGAAAGTTTGTTAGTGGGATGGAGTTTTC
AAAATGGTTAAACAATGAGTATATTCCCAATAATCAAGAAATGAATTGGATTAAGGAGGTATCTTCAAAAGCTACTAAACAAGCGATTATGAATGGAGAT
AAAGCATTTAAAGATTTCTTTAAAAAAGCTAAAGGCTTTCCAAGATTTAAGAAAAAGAAGAATCAAGATGTAAAAGCTTATTTTCCTAAGAATAATAAGA
CTGATTGGACTATTGAAAGACATAGGGTCAAAATACCAACACTTGGATGGGTTAGACTAAAAGAGTTTGGATATATTCCTATAAATTCAATAGTTAAAAG
GGGTACAGTTAGCCAAAAAGCAGATAGATATTATGTATCTATACTAGTTGAAGAAGATTATAAAGAGGTATCAAAGTCTATCAATGAAGGTGTAGGTATA
GATTTAGGGATTAAAGATTTTGCTATATGTTCAGATGGGAATAAATTTAAAAATATAAATAAGACTTACAATGTAAAAAAGCTAGAAAAGAAATTAAAAA
GAGAGCAAAGAAGGCTTTCAAGGAAATATGAAAGTTTAAAAATAAGAAATAAAAATATAAAAGAAGGGAGACCTACTCGTCAAAATATTCAAAAACAAGT
AGTCAAAGTACAAAAACTTCATAAGAGATTAACAAATATAAGAACTGATTATATAAATAAAACAGTCGCTAAGATAGTTGAGCAAAAACCAAGCTATGTA
ACTATTGAAGATTTAAATGTTAAAGGAATGATGAAGAATAAGCATTTATCCAAAGCAGTTGCACAACAAAAGTTTTTTGAATTTAAAACTAAGTTAACAG
TTAAATGTAAAGAAAAGAATATAGAACTTAGAATAGTAGATAGATTTTATCCATCATCAAAGACTTGTAGTCAATGTGGAAAGGTTAAGAAAGATTTAAA
ACTATCTAATCGGATTTATAAATGTGATTGTGGATTATCCGTTGATAGAGATTTAAACGCAAGTATTAATCTTAAAAATGCAAAAGAATATAAGATAGCT
TAAAATCAAAAGCACTTATATATGTACGGAGGGCTAACTTCGGAATTTAAGCCTTTGGAGAGCCATAAAAAATCGTAGTAGCTTAGGCAAGGCGAGGTTC
TATGAAGAAGGAAAATTCTCAATATGGATATGTTTGACCATATTTTGAGTAGCAG
TGTTAAGAACTTCTATAAATAGAAGATATTAAACTTATGAATAGTATCTTTAGTATATAGGAATACATAAAGAAACAGGTAGTAGAAAAAATAGTTATTT
ATACATTCATTTCAACTTCTTACCTAAAATACAATCTAAAAAATTAAATTGTATTTCTTAGATAATATTATAATGATAAAGGAATAATATTAGATGAAGT
TATTGAGGATTTTTTTTAAGATTATGGAGGATGAAGTAGTTGAAAAGAGCGTATAAGATAGAGATTAATCCTACTGATGAACAAATGTTTAAAATACAAC
AAACTATTGGGGTATCAAGATTTGTCTATAACCTTTATATTGCTCGTAATAAAGAGATTTACGAGAAAGAAGGAAAGTTTGTTAGTGGGATGGAGTTTTC
AAAATGGTTAAACAATGAGTATATTCCCAATAATCAAGAAATGAATTGGATTAAGGAGGTATCTTCAAAAGCTACTAAACAAGCGATTATGAATGGAGAT
AAAGCATTTAAAGATTTCTTTAAAAAAGCTAAAGGCTTTCCAAGATTTAAGAAAAAGAAGAATCAAGATGTAAAAGCTTATTTTCCTAAGAATAATAAGA
CTGATTGGACTATTGAAAGACATAGGGTCAAAATACCAACACTTGGATGGGTTAGACTAAAAGAGTTTGGATATATTCCTATAAATTCAATAGTTAAAAG
GGGTACAGTTAGCCAAAAAGCAGATAGATATTATGTATCTATACTAGTTGAAGAAGATTATAAAGAGGTATCAAAGTCTATCAATGAAGGTGTAGGTATA
GATTTAGGGATTAAAGATTTTGCTATATGTTCAGATGGGAATAAATTTAAAAATATAAATAAGACTTACAATGTAAAAAAGCTAGAAAAGAAATTAAAAA
GAGAGCAAAGAAGGCTTTCAAGGAAATATGAAAGTTTAAAAATAAGAAATAAAAATATAAAAGAAGGGAGACCTACTCGTCAAAATATTCAAAAACAAGT
AGTCAAAGTACAAAAACTTCATAAGAGATTAACAAATATAAGAACTGATTATATAAATAAAACAGTCGCTAAGATAGTTGAGCAAAAACCAAGCTATGTA
ACTATTGAAGATTTAAATGTTAAAGGAATGATGAAGAATAAGCATTTATCCAAAGCAGTTGCACAACAAAAGTTTTTTGAATTTAAAACTAAGTTAACAG
TTAAATGTAAAGAAAAGAATATAGAACTTAGAATAGTAGATAGATTTTATCCATCATCAAAGACTTGTAGTCAATGTGGAAAGGTTAAGAAAGATTTAAA
ACTATCTAATCGGATTTATAAATGTGATTGTGGATTATCCGTTGATAGAGATTTAAACGCAAGTATTAATCTTAAAAATGCAAAAGAATATAAGATAGCT
TAAAATCAAAAGCACTTATATATGTACGGAGGGCTAACTTCGGAATTTAAGCCTTTGGAGAGCCATAAAAAATCGTAGTAGCTTAGGCAAGGCGAGGTTC
TATGAAGAAGGAAAATTCTCAATATGGATATGTTTGACCATATTTTGAGTAGCAG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1164 bp | 387 aa | 340 | 1503 | + | No |
AG : TnpB
ORF sequence :
MKRAYKIEINPTDEQMFKIQQTIGVSRFVYNLYIARNKEIYEKEGKFVSGMEFSKWLNNEYIPNNQEMNWIKEVSSKATKQAIMNGDKAFKDFFKKAKGF
PRFKKKKNQDVKAYFPKNNKTDWTIERHRVKIPTLGWVRLKEFGYIPINSIVKRGTVSQKADRYYVSILVEEDYKEVSKSINEGVGIDLGIKDFAICSDG
NKFKNINKTYNVKKLEKKLKREQRRLSRKYESLKIRNKNIKEGRPTRQNIQKQVVKVQKLHKRLTNIRTDYINKTVAKIVEQKPSYVTIEDLNVKGMMKN
KHLSKAVAQQKFFEFKTKLTVKCKEKNIELRIVDRFYPSSKTCSQCGKVKKDLKLSNRIYKCDCGLSVDRDLNASINLKNAKEYKIA
PRFKKKKNQDVKAYFPKNNKTDWTIERHRVKIPTLGWVRLKEFGYIPINSIVKRGTVSQKADRYYVSILVEEDYKEVSKSINEGVGIDLGIKDFAICSDG
NKFKNINKTYNVKKLEKKLKREQRRLSRKYESLKIRNKNIKEGRPTRQNIQKQVVKVQKLHKRLTNIRTDYINKTVAKIVEQKPSYVTIEDLNVKGMMKN
KHLSKAVAQQKFFEFKTKLTVKCKEKNIELRIVDRFYPSSKTCSQCGKVKKDLKLSNRIYKCDCGLSVDRDLNASINLKNAKEYKIA
Blast result :
Comments
There are 9 copies of ISCpe4 in this strain.
ISCpe4 is 88% aa similar to ISCbt3.
ISCpe4 is 88% aa similar to ISCbt3.
References
1] Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mulligan,S., Benton,J., Radune,D., Fisher,D.J., Atkins,H.S., Hiscox,T., Jost,B.H., Billington,S.J., Songer,J.G., McClane,B.A., Titball,R.W., Rood,J.I., Melville,S.B. and Paulsen,I.T.(2006) Genome Res. 16 (8), 1031-1040