ISCpe4

  • Family IS200/IS605
  • Group IS1341
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008262 ND Clostridium perfringens
Clostridium perfringens SM101
DNA section
IS Length : 1655 bp

Ends


Left end : GATTATATTAGTAAACATTATAAACCAAAAGAATTTACAGAATTATTAAATGTATAAGTTATTACACTGCAAAGTTTAGATATTTGTGGAAAATTAAAAG II struct. : No
Right end : TGGAGAGCCATAAAAAATCGTAGTAGCTTAGGCAAGGCGAGGTTCTATGAAGAAGGAAAATTCTCAATATGGATATGTTTGACCATATTTTGAGTAGCAG II struct. : No

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
TATAATCACTTCCTTTTTGTGAAAATCTACGATTA

DNA sequence

GATTATATTAGTAAACATTATAAACCAAAAGAATTTACAGAATTATTAAATGTATAAGTTATTACACTGCAAAGTTTAGATATTTGTGGAAAATTAAAAG
TGTTAAGAACTTCTATAAATAGAAGATATTAAACTTATGAATAGTATCTTTAGTATATAGGAATACATAAAGAAACAGGTAGTAGAAAAAATAGTTATTT
ATACATTCATTTCAACTTCTTACCTAAAATACAATCTAAAAAATTAAATTGTATTTCTTAGATAATATTATAATGATAAAGGAATAATATTAGATGAAGT
TATTGAGGATTTTTTTTAAGATTATGGAGGATGAAGTAGTTGAAAAGAGCGTATAAGATAGAGATTAATCCTACTGATGAACAAATGTTTAAAATACAAC
AAACTATTGGGGTATCAAGATTTGTCTATAACCTTTATATTGCTCGTAATAAAGAGATTTACGAGAAAGAAGGAAAGTTTGTTAGTGGGATGGAGTTTTC
AAAATGGTTAAACAATGAGTATATTCCCAATAATCAAGAAATGAATTGGATTAAGGAGGTATCTTCAAAAGCTACTAAACAAGCGATTATGAATGGAGAT
AAAGCATTTAAAGATTTCTTTAAAAAAGCTAAAGGCTTTCCAAGATTTAAGAAAAAGAAGAATCAAGATGTAAAAGCTTATTTTCCTAAGAATAATAAGA
CTGATTGGACTATTGAAAGACATAGGGTCAAAATACCAACACTTGGATGGGTTAGACTAAAAGAGTTTGGATATATTCCTATAAATTCAATAGTTAAAAG
GGGTACAGTTAGCCAAAAAGCAGATAGATATTATGTATCTATACTAGTTGAAGAAGATTATAAAGAGGTATCAAAGTCTATCAATGAAGGTGTAGGTATA
GATTTAGGGATTAAAGATTTTGCTATATGTTCAGATGGGAATAAATTTAAAAATATAAATAAGACTTACAATGTAAAAAAGCTAGAAAAGAAATTAAAAA
GAGAGCAAAGAAGGCTTTCAAGGAAATATGAAAGTTTAAAAATAAGAAATAAAAATATAAAAGAAGGGAGACCTACTCGTCAAAATATTCAAAAACAAGT
AGTCAAAGTACAAAAACTTCATAAGAGATTAACAAATATAAGAACTGATTATATAAATAAAACAGTCGCTAAGATAGTTGAGCAAAAACCAAGCTATGTA
ACTATTGAAGATTTAAATGTTAAAGGAATGATGAAGAATAAGCATTTATCCAAAGCAGTTGCACAACAAAAGTTTTTTGAATTTAAAACTAAGTTAACAG
TTAAATGTAAAGAAAAGAATATAGAACTTAGAATAGTAGATAGATTTTATCCATCATCAAAGACTTGTAGTCAATGTGGAAAGGTTAAGAAAGATTTAAA
ACTATCTAATCGGATTTATAAATGTGATTGTGGATTATCCGTTGATAGAGATTTAAACGCAAGTATTAATCTTAAAAATGCAAAAGAATATAAGATAGCT
TAAAATCAAAAGCACTTATATATGTACGGAGGGCTAACTTCGGAATTTAAGCCTTTGGAGAGCCATAAAAAATCGTAGTAGCTTAGGCAAGGCGAGGTTC
TATGAAGAAGGAAAATTCTCAATATGGATATGTTTGACCATATTTTGAGTAGCAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1164 bp387 aa3401503+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKRAYKIEINPTDEQMFKIQQTIGVSRFVYNLYIARNKEIYEKEGKFVSGMEFSKWLNNEYIPNNQEMNWIKEVSSKATKQAIMNGDKAFKDFFKKAKGF
PRFKKKKNQDVKAYFPKNNKTDWTIERHRVKIPTLGWVRLKEFGYIPINSIVKRGTVSQKADRYYVSILVEEDYKEVSKSINEGVGIDLGIKDFAICSDG
NKFKNINKTYNVKKLEKKLKREQRRLSRKYESLKIRNKNIKEGRPTRQNIQKQVVKVQKLHKRLTNIRTDYINKTVAKIVEQKPSYVTIEDLNVKGMMKN
KHLSKAVAQQKFFEFKTKLTVKCKEKNIELRIVDRFYPSSKTCSQCGKVKKDLKLSNRIYKCDCGLSVDRDLNASINLKNAKEYKIA

 

Blast result :
Comments
There are 9 copies of ISCpe4 in this strain.
ISCpe4 is 88% aa similar to ISCbt3.
References
1] Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mulligan,S., Benton,J., Radune,D., Fisher,D.J., Atkins,H.S., Hiscox,T., Jost,B.H., Billington,S.J., Songer,J.G., McClane,B.A., Titball,R.W., Rood,J.I., Melville,S.B. and Paulsen,I.T.(2006) Genome Res. 16 (8), 1031-1040