ISAma4
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_011138 | ND | Alteromonas macleodii | Alteromonas macleodii 'Deep ecotype' |
DNA section
IS Length : 1529 bp
Ends
IR Length : 28/29
IRL : GTAACCGTTCACCAGGGCCCTATTGACAGTTAGTAATATTTATTTTCAAT
IRR : GTAACCGTTCACCAAGGCCCTATTGACAGGCAGCTTTGAAGTCGTCGAGC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTTCCACTC | CAATATAG | AGACTTTTAG | 8 |
| GAAGCACCTA | GAATAGTCC | CTCTCACAAAG | 9 |
| CGCTCTGGCT | GTTTCGCC | AACCACTAACAC | 8 |
DNA sequence
GTAACCGTTCACCAGGGCCCTATTGACAGTTAGTAATATTTATTTTCAATGATCGTGGGGATCCTATTGATTGATCCCGCCAGTCTGTCAGAGTGGTTTC
ATGCCACGTAAAAAGCAGCCCACAAAGCCACCTGTCGCTACTAATCTCGATGATGCCAATGAGCTCATTAGTACACTCTGGGACAGGCTAAATGACCTCG
AAGACCGACTGAATCAAAACAGTCGTAATTCATCGCGCCCGCCATCGTCTAATGGGCCGGGGGCGTCCTCTTCTGCGCCAGCTAAAAAGCCGACAGGCCG
TAAGCGCGGTGCGCAATCCGGCCATAAAGGCAGTAAGCGGATGCTGGCCGATACCGTTGATGAGACGCGCACCTATTATCCCGACGATACTTGTGCTTGC
GGTGGTACTATTACTATCAGTGATTCACCGTATCGCCGCCATCAGGTTTTTGATATTCCTTCTCAGGCTTTCTCTGTGGTTGAACATCAGTTACATCAGG
GTCAGTGTTGTCAGTGCAGCAAAACGGTAAAAGCAACGCTACCTGACAACGTGAATCAGGGACAGATGGGCAATAACCTGCTGGCATATGTGGCAATGCA
GTCCGGTCAGTTTCACCAGAGTATCAGTAAAATCCAGCAACAGCTCGAACAGAACTTCGGCTTATCGTTCAGTCGCGGTGCTATCTCTGAAGCGCAGGGC
CGGGTTAGTTCAGTACTGACGCCAGCGTATCAGGATATCAAAGAGATGATGCGCACTGAGGCGGTGGTACACTGCGATGAAACCCGTCATCAGCGTGGTA
ACGAAAACCGCTGGATGTGGCAGGTATGCACAGCAGAATTATCATGCTTTATGACGCACTTCTCACGTGGCGCCTGGGCGGCAAAGAAACTACTCGGCGA
TAATCCGGAAAACATTGTTGTTACTGACCAGTATGCCGGTTATCACTACATCGATTCAGACCACCGTCAATTGTGCTGGGCGCATATCTTAAGAAACATG
AATGCGCTGGCGGAAAGCTGGGGTACGAACAAGACTTATGGAACGACGTTAGTCAGGCTCATTCGCATACTGTTCCGGCTGCAACACCGGTATGAGAGTA
ACGCACTAAGTGAAAAGCGATACCTGGACCGGATGGAAAAACTACGCATCGCCTGGCGAGAGCAACTTGAACTGGCATCAAGACGCTGTGTGACTCCCCG
CTATCAGAACCGGTGTAAGCTACTGCTAAAACACGATGACATGTGCTGGGTATTCCTCAGTCACGATGGCGTCCCTCTCACTAACAATGAAGCCGAGCGT
TCATTGCGAAGCTATGTGCTGTGGCGAAAAGGCAGCTATGGTGTGTGGTCTCACCGAGGGGAACTGTTCAGACAACGTATACTCACCATCGTCGAAACCT
GCCGGAAACAAAAGCTGAATCCACTGAATTGGCTCCGCGCCATTCTCGAAGCGACGCTGAACAAAACGTCCTATCCTCTGCTCGACGACTTCAAAGCTGC
CTGTCAATAGGGCCTTGGTGAACGGTTAC
ATGCCACGTAAAAAGCAGCCCACAAAGCCACCTGTCGCTACTAATCTCGATGATGCCAATGAGCTCATTAGTACACTCTGGGACAGGCTAAATGACCTCG
AAGACCGACTGAATCAAAACAGTCGTAATTCATCGCGCCCGCCATCGTCTAATGGGCCGGGGGCGTCCTCTTCTGCGCCAGCTAAAAAGCCGACAGGCCG
TAAGCGCGGTGCGCAATCCGGCCATAAAGGCAGTAAGCGGATGCTGGCCGATACCGTTGATGAGACGCGCACCTATTATCCCGACGATACTTGTGCTTGC
GGTGGTACTATTACTATCAGTGATTCACCGTATCGCCGCCATCAGGTTTTTGATATTCCTTCTCAGGCTTTCTCTGTGGTTGAACATCAGTTACATCAGG
GTCAGTGTTGTCAGTGCAGCAAAACGGTAAAAGCAACGCTACCTGACAACGTGAATCAGGGACAGATGGGCAATAACCTGCTGGCATATGTGGCAATGCA
GTCCGGTCAGTTTCACCAGAGTATCAGTAAAATCCAGCAACAGCTCGAACAGAACTTCGGCTTATCGTTCAGTCGCGGTGCTATCTCTGAAGCGCAGGGC
CGGGTTAGTTCAGTACTGACGCCAGCGTATCAGGATATCAAAGAGATGATGCGCACTGAGGCGGTGGTACACTGCGATGAAACCCGTCATCAGCGTGGTA
ACGAAAACCGCTGGATGTGGCAGGTATGCACAGCAGAATTATCATGCTTTATGACGCACTTCTCACGTGGCGCCTGGGCGGCAAAGAAACTACTCGGCGA
TAATCCGGAAAACATTGTTGTTACTGACCAGTATGCCGGTTATCACTACATCGATTCAGACCACCGTCAATTGTGCTGGGCGCATATCTTAAGAAACATG
AATGCGCTGGCGGAAAGCTGGGGTACGAACAAGACTTATGGAACGACGTTAGTCAGGCTCATTCGCATACTGTTCCGGCTGCAACACCGGTATGAGAGTA
ACGCACTAAGTGAAAAGCGATACCTGGACCGGATGGAAAAACTACGCATCGCCTGGCGAGAGCAACTTGAACTGGCATCAAGACGCTGTGTGACTCCCCG
CTATCAGAACCGGTGTAAGCTACTGCTAAAACACGATGACATGTGCTGGGTATTCCTCAGTCACGATGGCGTCCCTCTCACTAACAATGAAGCCGAGCGT
TCATTGCGAAGCTATGTGCTGTGGCGAAAAGGCAGCTATGGTGTGTGGTCTCACCGAGGGGAACTGTTCAGACAACGTATACTCACCATCGTCGAAACCT
GCCGGAAACAAAAGCTGAATCCACTGAATTGGCTCCGCGCCATTCTCGAAGCGACGCTGAACAAAACGTCCTATCCTCTGCTCGACGACTTCAAAGCTGC
CTGTCAATAGGGCCTTGGTGAACGGTTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1410 bp | 469 aa | 101 | 1510 | + | No |
Chemistry : DDE
ORF sequence :
MPRKKQPTKPPVATNLDDANELISTLWDRLNDLEDRLNQNSRNSSRPPSSNGPGASSSAPAKKPTGRKRGAQSGHKGSKRMLADTVDETRTYYPDDTCAC
GGTITISDSPYRRHQVFDIPSQAFSVVEHQLHQGQCCQCSKTVKATLPDNVNQGQMGNNLLAYVAMQSGQFHQSISKIQQQLEQNFGLSFSRGAISEAQG
RVSSVLTPAYQDIKEMMRTEAVVHCDETRHQRGNENRWMWQVCTAELSCFMTHFSRGAWAAKKLLGDNPENIVVTDQYAGYHYIDSDHRQLCWAHILRNM
NALAESWGTNKTYGTTLVRLIRILFRLQHRYESNALSEKRYLDRMEKLRIAWREQLELASRRCVTPRYQNRCKLLLKHDDMCWVFLSHDGVPLTNNEAER
SLRSYVLWRKGSYGVWSHRGELFRQRILTIVETCRKQKLNPLNWLRAILEATLNKTSYPLLDDFKAACQ
GGTITISDSPYRRHQVFDIPSQAFSVVEHQLHQGQCCQCSKTVKATLPDNVNQGQMGNNLLAYVAMQSGQFHQSISKIQQQLEQNFGLSFSRGAISEAQG
RVSSVLTPAYQDIKEMMRTEAVVHCDETRHQRGNENRWMWQVCTAELSCFMTHFSRGAWAAKKLLGDNPENIVVTDQYAGYHYIDSDHRQLCWAHILRNM
NALAESWGTNKTYGTTLVRLIRILFRLQHRYESNALSEKRYLDRMEKLRIAWREQLELASRRCVTPRYQNRCKLLLKHDDMCWVFLSHDGVPLTNNEAER
SLRSYVLWRKGSYGVWSHRGELFRQRILTIVETCRKQKLNPLNWLRAILEATLNKTSYPLLDDFKAACQ
Blast result :
Comments
ISAma4 is 63% aa similar to ISVch7.
References
1] ISfinder annotation (2008).
2] Ivars-Martinez,E., Martin-Cuadrado,A.B., D'Auria,G., Mira,A., Ferriera,S., Johnson,J., Friedman,R. and Rodriguez-Valera,F. (2008) ISME J 2 (12), 1194-1212.
2] Ivars-Martinez,E., Martin-Cuadrado,A.B., D'Auria,G., Mira,A., Ferriera,S., Johnson,J., Friedman,R. and Rodriguez-Valera,F. (2008) ISME J 2 (12), 1194-1212.