ISGob2

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABGO00000000 ND Gemmata obscuriglobus
Gemmata obscuriglobus UQM 2246
DNA section
IS Length : 1486 bp

Ends


IR Length : 16/17

IRL : GTAACCGTTCACGGGGTCTGATCGCCGGTCGACTTGCCGGGGTCGGCCTG
IRR : GCACCCCTCTGTTCGCCAAACCGCTCGACCCGCGTGCGCTGGCCGCGGCC

Insertion site


Left flankDirect repeatRight flankDR Length
CCAGGTGAACGCGGGCTCAG0

DNA sequence

GTAACCGTTCACGGGGTCTGATCGCCGGTCGACTTGCCGGGGTCGGCCTGGAGCCGCAGATTCGTGTGTAATGGGCGCAACCCCGCCAATCCCTGAGGAG
CTCTGGAACCAACTGCCGGCGGCGGCCCAGGCCGCCGTGTCGGCGGTAATTGCGGCCCTGGAAGCCCGGGTTGCGGCCCTGGAAGCCCGTCTCAACCAGA
GCCCGTCCAACTCGTCCAAGCCCCCGTCCTCCGACGGCCCGCAGGTGAAGCCGGCACCGCCTCGGAAAGGAACCGGGAAGGCCCGGGGCGGACAACCCGG
GCACCCCAAGCGGACCCGCCCGGACCTGCCCCCGGACACGGTCCTCGAGTTGCGGCCCGAGGTGTGCGCCGGGTGCTCCGGTGCGCTCGCCGGGACCGAT
CCCGAGCCCATTCGCCACCAGGTGCTCGAGTTACCCGCGGTGCGGCCCCAGGTGACCGAGTACCGGCGACACCGGCTCACCTGCCCCCGTTGCGCGCGGG
TCACATGCCCACCATTGCCACCCGGGGTGCGGGGCGGATACGGCCCCCGGACCCAGGCCGCCTGCGCGGTCCTGACCGGGGCGTACCGACTCGGCAAGCG
GGGCGTCGCGCGGGTGCTGAGGGACCTGTTCGGGGTGCCGATCAGCCCGGGTGCCGTGTGCCACCTCCAGGACCGCACCGCGGGCGCCCGGGAGCCGGTC
ACCACGGCGGTCCACGCCCACCTCACGGGGAGGTCCGCGAACGTGGACGAGACCGGATGGCGCGAGGGCCGGAGCCGGGCCTGGCTGTGGGTCGCGGTGG
CCGACCGGTTGACCGGGTTCGTGATCCGCCGGTCCCGAGCCCGCAAGGTGTTGGGCGAGCTGATCCCGGGAACCCCGGGTGTGCTCACCACCGACCGGTA
CTCGGTGTACGACCACCTGTCACCGGACCGGCGCCAGGTGTGTTGGGCGCACCTGCGGCGGGACTTCCAGGCGATGATCGACCGGGGCAACGACGGGTCC
CCGATCGGGACCGCCCTGTTGGCCTCGGCCGATGCGCTCCTGGGCGCGTGGCCCCGGGTGCGAGACGGGACGTTGAGCCGGGCCCGGTTCGTGTCCCATC
ACCTGGGCGGGGTTCGGGCGGCCGTCTACGCCCAACTGGGGCGCGGGCGCACGTGCGGGTGCGCGATCACCGCGGGCGTGTGCCGCGAGTTGCTTCGGTT
CGGTGGAGCCCTGTACACGTTCGCCCGGGTGGACGGCGTCGAGCCCACCAACAACGCGGCCGAGCGGGCCCTGCGCCACGCGGTGTGCTGGCGCAAGACC
AGTTACGGCACCGACTCCGAACGCGGCTCCCGATTCGTCGAGCGGGTGCTCACCGTCGTCGCCTCGTGCCAGCAGCAAGGCCGAAACGTGCTCACCTTCC
TCACCGACGCCATTCAGGCCGCACGAAACGGCACACCCGTGCCCTCACTCCTTCCCGGCACCCATCGCCACCCCGTGAACGGATACGCGGGCTCAGGTGC
GGCTCACGAGCAATAGGTCATGGAGGGCCGCGGCCAGCGCACGCGGGTCGAGCGGTTTGGCGAACAGAGGGGTGC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1446 bp481 aa711516+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGATPPIPEELWNQLPAAAQAAVSAVIAALEARVAALEARLNQSPSNSSKPPSSDGPQVKPAPPRKGTGKARGGQPGHPKRTRPDLPPDTVLELRPEVCA
GCSGALAGTDPEPIRHQVLELPAVRPQVTEYRRHRLTCPRCARVTCPPLPPGVRGGYGPRTQAACAVLTGAYRLGKRGVARVLRDLFGVPISPGAVCHLQ
DRTAGAREPVTTAVHAHLTGRSANVDETGWREGRSRAWLWVAVADRLTGFVIRRSRARKVLGELIPGTPGVLTTDRYSVYDHLSPDRRQVCWAHLRRDFQ
AMIDRGNDGSPIGTALLASADALLGAWPRVRDGTLSRARFVSHHLGGVRAAVYAQLGRGRTCGCAITAGVCRELLRFGGALYTFARVDGVEPTNNAAERA
LRHAVCWRKTSYGTDSERGSRFVERVLTVVASCQQQGRNVLTFLTDAIQAARNGTPVPSLLPGTHRHPVNGYAGSGAAHEQ

 

Blast result :
Comments
ISGob2 is 68% aa similar to ISGob1.
References
1] ISfinder annotation (2008).
2] Ward,N. (2007) Direct Submission GenBank.