ISAcma4
- Family IS1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009925 | ND | Acaryochloris marina | Acaryochloris marina MBIC11017 plasmid pREB3 Acaryochloris marina MBIC11017 plasmid pREB4 Acaryochloris marina MBIC11017 |
DNA section
IS Length : 796 bp
Ends
IR Length : 24/25
IRL : GGCGTTGCTCAATGACGGGATGAATTAATTGGATTGCGTCAGGATAACCT
IRR : GGCGTTGCTCAATGACGGGATGACTCACGCAGGAATAGGTACTTCCCCAA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TTTAACTAGGCACCAGCT | AAATTGAA | ACCCATAAAC | 8 |
| AAGACTTAATGA | CTTTTCTT | GAGTATTTAGAGGGAA | 8 |
DNA sequence
GGCGTTGCTCAATGACGGGATGAATTAATTGGATTGCGTCAGGATAACCTCATGACTATTTCAAACATCATGAGGAATCTGTATGAAGTGTCCTGAGTGT
GGTGGTCAACATATCCATAAGAATGGGCATCGTCGAGGTAAACAAAATCATATCTGTGTGACCTGTGGACGACAGTTTCTTTCAACTTACTCAAAGCGTG
GCTACAGTGATTGGACGAAACGACTCTGCCTGAGAATGTATGTCAATGGAATGGGGTTGAAGGGTATCGAACGAGTCATAGGCGTTGCTCATACCACTGT
GATTCATTGGGTTCAACAAGTTGGAGTTCTATTACCCGATGCTTATGACCCCGACGATATCCCACAGGTCGGAGAATTAGATGAACTCGAAACCTTTGTG
GGCAAAAAACGCAATAAGGTCTGGATTTGGACTGTGGTGGATCATTTTCACCCCGGCATTCTAGGCTGGGTTGTGGGTGACCATAGTGCTGAGACCTTTC
GACCGTTATGGCAAGCAATCGTCTGTTGGCAATGTTTTTTCTGGGTCAGTGATGGCAATCCCGTCTATCCAGGCTTTATCCCAGAGGGTGACCAGATTGT
TAGCAAGACCTACATGACACGAGTAGAGGGAGAAAATACTCGTTTACGACATTACTTGGCACGGCTCCATCGCAAGACTTTATGTTATTCAAAGTCGGTG
GACATGCTCAAGCATTCAATTCGACTATTGATCCACTATCTCAAGTTTGGGGAAGTACCTATTCCTGCGTGAGTCATCCCGTCATTGAGCAACGCC
GGTGGTCAACATATCCATAAGAATGGGCATCGTCGAGGTAAACAAAATCATATCTGTGTGACCTGTGGACGACAGTTTCTTTCAACTTACTCAAAGCGTG
GCTACAGTGATTGGACGAAACGACTCTGCCTGAGAATGTATGTCAATGGAATGGGGTTGAAGGGTATCGAACGAGTCATAGGCGTTGCTCATACCACTGT
GATTCATTGGGTTCAACAAGTTGGAGTTCTATTACCCGATGCTTATGACCCCGACGATATCCCACAGGTCGGAGAATTAGATGAACTCGAAACCTTTGTG
GGCAAAAAACGCAATAAGGTCTGGATTTGGACTGTGGTGGATCATTTTCACCCCGGCATTCTAGGCTGGGTTGTGGGTGACCATAGTGCTGAGACCTTTC
GACCGTTATGGCAAGCAATCGTCTGTTGGCAATGTTTTTTCTGGGTCAGTGATGGCAATCCCGTCTATCCAGGCTTTATCCCAGAGGGTGACCAGATTGT
TAGCAAGACCTACATGACACGAGTAGAGGGAGAAAATACTCGTTTACGACATTACTTGGCACGGCTCCATCGCAAGACTTTATGTTATTCAAAGTCGGTG
GACATGCTCAAGCATTCAATTCGACTATTGATCCACTATCTCAAGTTTGGGGAAGTACCTATTCCTGCGTGAGTCATCCCGTCATTGAGCAACGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 690 bp | 229 aa | 83 | 772 | + | No |
Chemistry : DDE
ORF sequence :
MKCPECGGQHIHKNGHRRGKQNHICVTCGRQFLSTYSKRGYSDWTKRLCLRMYVNGMGLKGIERVIGVAHTTVIHWVQQVGVLLPDAYDPDDIPQVGELD
ELETFVGKKRNKVWIWTVVDHFHPGILGWVVGDHSAETFRPLWQAIVCWQCFFWVSDGNPVYPGFIPEGDQIVSKTYMTRVEGENTRLRHYLARLHRKTL
CYSKSVDMLKHSIRLLIHYLKFGEVPIPA
ELETFVGKKRNKVWIWTVVDHFHPGILGWVVGDHSAETFRPLWQAIVCWQCFFWVSDGNPVYPGFIPEGDQIVSKTYMTRVEGENTRLRHYLARLHRKTL
CYSKSVDMLKHSIRLLIHYLKFGEVPIPA
Blast result :
Comments
ISAcma4 is 83% aa similar to ISMae3.
There is no expected frameshift in this IS.
There is no expected frameshift in this IS.
References
1] Swingley,W.D., Chen,M., Cheung,P.C., Conrad,A.L., Dejesa,L.C., Hao,J., Honchak,B.M., Karbach,L.E., Kurdoglu,A., Lahiri,S., Mastrian,S.D., Miyashita,H., Page,L., Ramakrishna,P., Satoh,S., Sattley,W.M., Shimada,Y., Taylor,H.L., Tomo,T., Tsuchiya,T., Wang,Z.T., Raymond,J., Mimuro,M., Blankenship,R.E. and Touchman,J.W. (2008) Proc. Natl. Acad. Sci. U.S.A.