ISMxa3

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008095 ND Myxococcus xanthus
Myxococcus xanthus DK 1622
DNA section
IS Length : 1926 bp

Ends


IR Length : 18/20

IRL : GTAAGCGTTCAGGGGTGATGGGCGGCTGAAGAAGGAGCAGGCCAGCAGTC
IRR : GTAACCGTTCAGGGGTGGTGTTGAGGCCTCCGTCGCGGTGTGCAACCCGT

Insertion site


Left flankDirect repeatRight flankDR Length
CTAGAGGTTTCGCATCCCATGA2

DNA sequence

GTAAGCGTTCAGGGGTGATGGGCGGCTGAAGAAGGAGCAGGCCAGCAGTCGGCGGGAGGCCTGTCGCTCGCTGACGCGGCGTGGGACATGGGACACACCC
CGTCGTGGCCGAGGTCGACCCCAAGGATGCGCGCATCGCGGAACTTGAGCGTCAGGTCGAGGAGCTGACTCGACTGGTGCAGGAGCTGCGGGAGCAGTTG
CGGCGAGATTCGGGCAACTCGAACCGGCCGCCGTCGAGCGATACGCCGGGGCAGAAGGCCGTGCGACGCAGGCAGAGCGGCAGTGAGAAGAAGCGCGGTG
GCCAGCCGGGGCACGTGGGACTGACACGCGCGCTTGTTGCCGAGGAGAAGGTGAGCGAGTTCAAGCACCTCTTCCCGTCCGCGTGTGGGAATTGCTGGGC
TCCTCTCTCGCCCGAAGGTGGCACGCGGGTGCGGCGCTACCAGTCCGTGGAATTGCCGCCGCTCAAGGCCCACGTCACGCAGTGGATGCGCCATGGCGTG
GAGTGCCCCAGGTGCAAGCATGAGACGTGGGCAAGCACCGCGGCGATTCCGACGTCGGCCTTCGGCCCGCGGCTGTCCGCCGTCGTTGGCCTTTTGACGG
GCGTCTACCACCTGAGTCGGCGCTCGGCGGTGAGGCTTCTGGGGGATGTGCTGGGCATCGACATTTCGCTGGGGGCAGTGAGCGCCGTCGAGGCGCGCGT
CAGCGAGGCGGTGAAGCCCGCGGTGGACGAGGCCTGGTCCCGGGTGTTGTTGGCGCCGGTGAAGCACACGGACGGCACGCAGTGGCTTGAGGCCGGCCTG
GCGCGCACGCTATGGACCATCGCCTCGTCAATGGCCACCGTCTTCAAGATTCTGGCGGACAGCAAGTCACGGACACTTGCGCCGCTCTTCGGCCAGAAAC
TCGGCGTCCTCGTGAGCGACCGCGCCACCGCGCTGAATTTCTGGGCCATGGAAGCGCGGCAGGTGTGCTGGGCCCACCTCTTGAGGAAGGCCGTTTCATT
CTCGGAGCGTGACGGGCCAGCCGGAGCGATTGGGCGCGAGCTACTCGACTACATCGGCATCCTCTTCGACTATTGGGGACGACTGCGCAGCGGCGAGTTG
CAGCGGGACACGCTGCGTGAGCGCATGGCCTCGGTGCGCACGCAGGTGGAAGCCTTGCTTGAGCGCGCCGTGGCCGCGAGGCTGCCGCACGTCTCTGGCT
CCTGTGAGGACATCCTCCAGCACCGGGCGGCGCTGTGGACTTTCGTTGACAGGGAGGGCGTCGAGCCCACCAACAACCATGCCGAGCGCGAGCTGCGGGC
CTTCGTCCTGTGGCGCAAGCGAAGCTTCGGCACCCAGAGCCCTCGGGGGAACCTCTTCGCCGAGAGGGTGATGACGGTGGCGCATACCGCCCGCAAGCAG
GAAAAGAATGTGCTCGAGTTCCTGACGGCCTGCTGCACCGCCGCCCGGACGGGGATGCCCGCGCCCTCGCTCTTCGCCGCGCCCTGAGCGCTACGCGGCC
TTCTTTCACATCGGGAAGTACCTCGTCGCGTTTCGCTCACCCGCCCTGCGCACACGGCCCTCTTGCTTCAGGCGCATCATCGGCCGATGAAGCGCCCGTG
GCTTTTCTCCGACGCGCGCGGCCAGGGCAGCCATCGTCTCGCCCGGACACTCCTGCACCGCCTCGAGCAGCCGCTCCGCGAGGTCAGCGAGGGCACCTGA
AGAGCGTCGGACTCTCGTCCCGCGCCGCTGCATTGCCACGGAGGGCGCGGGAGCCAACACCGAGAACGCGCGCTCCACCGCAGCCTTTACCAAGCGTTGC
TGCTCCACCAGGTGCTCGTGGACCAATCGTTCAATCTTCGATTCCAGCGTCCCAAGGGCTTTCATGCTCATCCGCCACGGGTTGCACACCGCGACGGAGG
CCTCAACACCACCCCTGAACGGTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1407 bp468 aa811487+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VGHGTHPVVAEVDPKDARIAELERQVEELTRLVQELREQLRRDSGNSNRPPSSDTPGQKAVRRRQSGSEKKRGGQPGHVGLTRALVAEEKVSEFKHLFPS
ACGNCWAPLSPEGGTRVRRYQSVELPPLKAHVTQWMRHGVECPRCKHETWASTAAIPTSAFGPRLSAVVGLLTGVYHLSRRSAVRLLGDVLGIDISLGAV
SAVEARVSEAVKPAVDEAWSRVLLAPVKHTDGTQWLEAGLARTLWTIASSMATVFKILADSKSRTLAPLFGQKLGVLVSDRATALNFWAMEARQVCWAHL
LRKAVSFSERDGPAGAIGRELLDYIGILFDYWGRLRSGELQRDTLRERMASVRTQVEALLERAVAARLPHVSGSCEDILQHRAALWTFVDREGVEPTNNH
AERELRAFVLWRKRSFGTQSPRGNLFAERVMTVAHTARKQEKNVLEFLTACCTAARTGMPAPSLFAAP

 

Blast result :
Comments
ISMxa3 is 55% aa similar to ISStau2.
References
1] ISfinder annotation (2008).
2] Goldman,B.S., Nierman,W.C., Kaiser,D., Slater,S.C., Durkin,A.S., Eisen,J., Ronning,C.M., Barbazuk,W.B., Blanchard,M., Field,C., Halling,C., Hinkle,G., Iartchuk,O., Kim,H.S., Mackenzie,C., Madupu,R., Miller,N., Shvartsbeyn,A., Sullivan,S.A., Vaudin,M., Wiegand,R. and Kaplan,H.B. (2006)(er) Proc. Natl. Acad. Sci. U.S.A. 103 (41), 15200-15205

3]Nierman,W.C.(2005) Direct Submission GenBank.