ISStau2

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAMD00000000 ND Stigmatella aurantiaca
Stigmatella aurantiaca DW4/3-1
DNA section
IS Length : 1585 bp

Ends


IR Length : 12

IRL : GTAAGCGTTCACCGGACTGGGCTGTATGAGGGGTGAGCAGGAGGGGACAG
IRR : GTAAGCGTTCACTGCCTCAGGCAGCGACCGCGAGCTGAGAGGGCTCTGCG

Insertion site


Left flankDirect repeatRight flankDR Length
AGTGCATTAGCTGTAGTGTTAG2
TGCACCGCTTGCCGGATCGTGCAATTTC8
TTTCTACCAACTAAATGAGTGTGGTTTT8
TCTCCACCAAGGACACACTTGTTGAAGC8

DNA sequence

GTAAGCGTTCACCGGACTGGGCTGTATGAGGGGTGAGCAGGAGGGGACAGAGGGGAGAGGAACCTATCGACAGGGTAGGTTTGGGAGTGTACTACCTGTG
GGGTGAGCCCGGTTGACCCCACAGATGCCCGCATCGCCGAGTTGGAAGGGGAAGTGGCCGAGCTGAAGAAGCTCGTGGCGGCACTGCTCGCGGAGAATGC
ATCCCTGCGCGCTGAAGTGGCTGAGCTGCGAGGGCGACTGGGCCAGAACTCGACCAACTCGTCCAAGCCCCCATCGTCCGACCCACCCGGGACACAGCGC
CCCTCGAAGCCAGCTTCGGGTCGCCGCCCTGGTGGCCAGCCGGGACACAAGCACCACAAGCGAGAGCTGGTGCCAGCGGAGCAGGTCCACCGCACTGTCG
ACATTGCCGCGCCACGGCAGTGCGACCAGTGCGAGCAGGGGTTGGCAGGCCGTGCTGTCGAGCCTCTCCGGCACCAGACGGTGGAGGTGGAGCCGATAAA
GCCGCACGTGACAGAGTACCGGTGCCACGGCAAGCAGTGTGGCAGATGCGGCGCGGTGAGCTATGGCGAGCTTCCCGTCGAGGTGGCAGGCCACACCTTT
GGAGAGCGCCTGACCGGCATCATCGTGCTGCTGTCGGGGCAGTACCGGCTCTCCAAGCGCAAGGTGCAGGATGCGCTTTCGGACCTGCTCGGAGTGCGCA
TCTGCCTGGGCTCCATTTCCAACCGCGAAGCCGAAGTCGCCAAGGCGTTGGAGGTGCCGGTGGCGCAGGTGGGGGACGCCATCCGAGAGGCGGAGCGCGC
CCATGCGGATGAGACAGGCTGGTTCGAAGGCAAGGTGAATGGACGAGCCAAGCGGGCCTGGCTGTGGGTCGTCGTCACCGCGCACCTGGCACTCTTCCGC
ATCTCCCCCAGCCGGGGCAGCGAGGTGGCCAAGGCCCTGCTGGGCGAGGACTTCACCGGTTTTCTCACCACGGACCGATGGAGCGCGTACAACTGGTACG
ACACCTTCCTGCGCCAGTTGTGCTGGAGCCACCTGACGAGGGACTTCCAGAGCTTCATTGACCGGGGTGGGGAAGGCGGCCGCCTCGGCGCGCTGCTCAT
GAAGGAGCGCGACCGCATGTTCAAGGGGTGGCGCCGAGTACGCGACGGGACGATGCCTCGAGAGGAGTTTGAACTGCGGATGCCGAAGGTCGAGCGCAGA
GTCGGCAGGCTCCTCCGTGACGCCGTCGTGTGCGCAGAGGACAAGACCGCCGGCACGGCGGCGGAAATCCTGAAGCTTGAGTCGGCCATGTGGACGTTCG
TCCATGTGGAGGGGCTCGAGCCCACCAACAACTTCGGTGAGCGCACCATCCGCCACGCTGTCATGTACAGGAAGACCAGCTTCGGGACGCAGTCGCCAGA
AGGCAGCCGCTTCGTCGAGCGGATTCTCACAGTGGTCACGACGCTGCGGCTGCAGAAGCGCAACGTGCTCGAATACCTGACCGCAGCCGTTGGCGCGCAT
CGACGAGGGCTTCCAGTGCCATCCCTCCTCCCCGTCGCAGAGCCCTCTCAGCTCGCGGTCGCTGCCTGAGGCAGTGAACGCTTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1467 bp488 aa1031569+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VSPVDPTDARIAELEGEVAELKKLVAALLAENASLRAEVAELRGRLGQNSTNSSKPPSSDPPGTQRPSKPASGRRPGGQPGHKHHKRELVPAEQVHRTVD
IAAPRQCDQCEQGLAGRAVEPLRHQTVEVEPIKPHVTEYRCHGKQCGRCGAVSYGELPVEVAGHTFGERLTGIIVLLSGQYRLSKRKVQDALSDLLGVRI
CLGSISNREAEVAKALEVPVAQVGDAIREAERAHADETGWFEGKVNGRAKRAWLWVVVTAHLALFRISPSRGSEVAKALLGEDFTGFLTTDRWSAYNWYD
TFLRQLCWSHLTRDFQSFIDRGGEGGRLGALLMKERDRMFKGWRRVRDGTMPREEFELRMPKVERRVGRLLRDAVVCAEDKTAGTAAEILKLESAMWTFV
HVEGLEPTNNFGERTIRHAVMYRKTSFGTQSPEGSRFVERILTVVTTLRLQKRNVLEYLTAAVGAHRRGLPVPSLLPVAEPSQLAVAA

 

Blast result :
Comments
ISStau2 is 45% aa similar to ISCysp3.
References
1] ISfinder annotation (2008).
2] Nierman,W.C. (2006) Direct Submission GenBank.