ISStau2
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_AAMD00000000 | ND | Stigmatella aurantiaca | Stigmatella aurantiaca DW4/3-1 |
DNA section
IS Length : 1585 bp
Ends
IR Length : 12
IRL : GTAAGCGTTCACCGGACTGGGCTGTATGAGGGGTGAGCAGGAGGGGACAG
IRR : GTAAGCGTTCACTGCCTCAGGCAGCGACCGCGAGCTGAGAGGGCTCTGCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGTGCATTAG | CT | GTAGTGTTAG | 2 |
TGCACCGCTT | GCCGGATC | GTGCAATTTC | 8 |
TTTCTACCAA | CTAAATGA | GTGTGGTTTT | 8 |
TCTCCACCAA | GGACACAC | TTGTTGAAGC | 8 |
DNA sequence
GTAAGCGTTCACCGGACTGGGCTGTATGAGGGGTGAGCAGGAGGGGACAGAGGGGAGAGGAACCTATCGACAGGGTAGGTTTGGGAGTGTACTACCTGTG
GGGTGAGCCCGGTTGACCCCACAGATGCCCGCATCGCCGAGTTGGAAGGGGAAGTGGCCGAGCTGAAGAAGCTCGTGGCGGCACTGCTCGCGGAGAATGC
ATCCCTGCGCGCTGAAGTGGCTGAGCTGCGAGGGCGACTGGGCCAGAACTCGACCAACTCGTCCAAGCCCCCATCGTCCGACCCACCCGGGACACAGCGC
CCCTCGAAGCCAGCTTCGGGTCGCCGCCCTGGTGGCCAGCCGGGACACAAGCACCACAAGCGAGAGCTGGTGCCAGCGGAGCAGGTCCACCGCACTGTCG
ACATTGCCGCGCCACGGCAGTGCGACCAGTGCGAGCAGGGGTTGGCAGGCCGTGCTGTCGAGCCTCTCCGGCACCAGACGGTGGAGGTGGAGCCGATAAA
GCCGCACGTGACAGAGTACCGGTGCCACGGCAAGCAGTGTGGCAGATGCGGCGCGGTGAGCTATGGCGAGCTTCCCGTCGAGGTGGCAGGCCACACCTTT
GGAGAGCGCCTGACCGGCATCATCGTGCTGCTGTCGGGGCAGTACCGGCTCTCCAAGCGCAAGGTGCAGGATGCGCTTTCGGACCTGCTCGGAGTGCGCA
TCTGCCTGGGCTCCATTTCCAACCGCGAAGCCGAAGTCGCCAAGGCGTTGGAGGTGCCGGTGGCGCAGGTGGGGGACGCCATCCGAGAGGCGGAGCGCGC
CCATGCGGATGAGACAGGCTGGTTCGAAGGCAAGGTGAATGGACGAGCCAAGCGGGCCTGGCTGTGGGTCGTCGTCACCGCGCACCTGGCACTCTTCCGC
ATCTCCCCCAGCCGGGGCAGCGAGGTGGCCAAGGCCCTGCTGGGCGAGGACTTCACCGGTTTTCTCACCACGGACCGATGGAGCGCGTACAACTGGTACG
ACACCTTCCTGCGCCAGTTGTGCTGGAGCCACCTGACGAGGGACTTCCAGAGCTTCATTGACCGGGGTGGGGAAGGCGGCCGCCTCGGCGCGCTGCTCAT
GAAGGAGCGCGACCGCATGTTCAAGGGGTGGCGCCGAGTACGCGACGGGACGATGCCTCGAGAGGAGTTTGAACTGCGGATGCCGAAGGTCGAGCGCAGA
GTCGGCAGGCTCCTCCGTGACGCCGTCGTGTGCGCAGAGGACAAGACCGCCGGCACGGCGGCGGAAATCCTGAAGCTTGAGTCGGCCATGTGGACGTTCG
TCCATGTGGAGGGGCTCGAGCCCACCAACAACTTCGGTGAGCGCACCATCCGCCACGCTGTCATGTACAGGAAGACCAGCTTCGGGACGCAGTCGCCAGA
AGGCAGCCGCTTCGTCGAGCGGATTCTCACAGTGGTCACGACGCTGCGGCTGCAGAAGCGCAACGTGCTCGAATACCTGACCGCAGCCGTTGGCGCGCAT
CGACGAGGGCTTCCAGTGCCATCCCTCCTCCCCGTCGCAGAGCCCTCTCAGCTCGCGGTCGCTGCCTGAGGCAGTGAACGCTTAC
GGGTGAGCCCGGTTGACCCCACAGATGCCCGCATCGCCGAGTTGGAAGGGGAAGTGGCCGAGCTGAAGAAGCTCGTGGCGGCACTGCTCGCGGAGAATGC
ATCCCTGCGCGCTGAAGTGGCTGAGCTGCGAGGGCGACTGGGCCAGAACTCGACCAACTCGTCCAAGCCCCCATCGTCCGACCCACCCGGGACACAGCGC
CCCTCGAAGCCAGCTTCGGGTCGCCGCCCTGGTGGCCAGCCGGGACACAAGCACCACAAGCGAGAGCTGGTGCCAGCGGAGCAGGTCCACCGCACTGTCG
ACATTGCCGCGCCACGGCAGTGCGACCAGTGCGAGCAGGGGTTGGCAGGCCGTGCTGTCGAGCCTCTCCGGCACCAGACGGTGGAGGTGGAGCCGATAAA
GCCGCACGTGACAGAGTACCGGTGCCACGGCAAGCAGTGTGGCAGATGCGGCGCGGTGAGCTATGGCGAGCTTCCCGTCGAGGTGGCAGGCCACACCTTT
GGAGAGCGCCTGACCGGCATCATCGTGCTGCTGTCGGGGCAGTACCGGCTCTCCAAGCGCAAGGTGCAGGATGCGCTTTCGGACCTGCTCGGAGTGCGCA
TCTGCCTGGGCTCCATTTCCAACCGCGAAGCCGAAGTCGCCAAGGCGTTGGAGGTGCCGGTGGCGCAGGTGGGGGACGCCATCCGAGAGGCGGAGCGCGC
CCATGCGGATGAGACAGGCTGGTTCGAAGGCAAGGTGAATGGACGAGCCAAGCGGGCCTGGCTGTGGGTCGTCGTCACCGCGCACCTGGCACTCTTCCGC
ATCTCCCCCAGCCGGGGCAGCGAGGTGGCCAAGGCCCTGCTGGGCGAGGACTTCACCGGTTTTCTCACCACGGACCGATGGAGCGCGTACAACTGGTACG
ACACCTTCCTGCGCCAGTTGTGCTGGAGCCACCTGACGAGGGACTTCCAGAGCTTCATTGACCGGGGTGGGGAAGGCGGCCGCCTCGGCGCGCTGCTCAT
GAAGGAGCGCGACCGCATGTTCAAGGGGTGGCGCCGAGTACGCGACGGGACGATGCCTCGAGAGGAGTTTGAACTGCGGATGCCGAAGGTCGAGCGCAGA
GTCGGCAGGCTCCTCCGTGACGCCGTCGTGTGCGCAGAGGACAAGACCGCCGGCACGGCGGCGGAAATCCTGAAGCTTGAGTCGGCCATGTGGACGTTCG
TCCATGTGGAGGGGCTCGAGCCCACCAACAACTTCGGTGAGCGCACCATCCGCCACGCTGTCATGTACAGGAAGACCAGCTTCGGGACGCAGTCGCCAGA
AGGCAGCCGCTTCGTCGAGCGGATTCTCACAGTGGTCACGACGCTGCGGCTGCAGAAGCGCAACGTGCTCGAATACCTGACCGCAGCCGTTGGCGCGCAT
CGACGAGGGCTTCCAGTGCCATCCCTCCTCCCCGTCGCAGAGCCCTCTCAGCTCGCGGTCGCTGCCTGAGGCAGTGAACGCTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1467 bp | 488 aa | 103 | 1569 | + | No |
Chemistry : DDE
ORF sequence :
VSPVDPTDARIAELEGEVAELKKLVAALLAENASLRAEVAELRGRLGQNSTNSSKPPSSDPPGTQRPSKPASGRRPGGQPGHKHHKRELVPAEQVHRTVD
IAAPRQCDQCEQGLAGRAVEPLRHQTVEVEPIKPHVTEYRCHGKQCGRCGAVSYGELPVEVAGHTFGERLTGIIVLLSGQYRLSKRKVQDALSDLLGVRI
CLGSISNREAEVAKALEVPVAQVGDAIREAERAHADETGWFEGKVNGRAKRAWLWVVVTAHLALFRISPSRGSEVAKALLGEDFTGFLTTDRWSAYNWYD
TFLRQLCWSHLTRDFQSFIDRGGEGGRLGALLMKERDRMFKGWRRVRDGTMPREEFELRMPKVERRVGRLLRDAVVCAEDKTAGTAAEILKLESAMWTFV
HVEGLEPTNNFGERTIRHAVMYRKTSFGTQSPEGSRFVERILTVVTTLRLQKRNVLEYLTAAVGAHRRGLPVPSLLPVAEPSQLAVAA
IAAPRQCDQCEQGLAGRAVEPLRHQTVEVEPIKPHVTEYRCHGKQCGRCGAVSYGELPVEVAGHTFGERLTGIIVLLSGQYRLSKRKVQDALSDLLGVRI
CLGSISNREAEVAKALEVPVAQVGDAIREAERAHADETGWFEGKVNGRAKRAWLWVVVTAHLALFRISPSRGSEVAKALLGEDFTGFLTTDRWSAYNWYD
TFLRQLCWSHLTRDFQSFIDRGGEGGRLGALLMKERDRMFKGWRRVRDGTMPREEFELRMPKVERRVGRLLRDAVVCAEDKTAGTAAEILKLESAMWTFV
HVEGLEPTNNFGERTIRHAVMYRKTSFGTQSPEGSRFVERILTVVTTLRLQKRNVLEYLTAAVGAHRRGLPVPSLLPVAEPSQLAVAA
Blast result :
Comments
ISStau2 is 45% aa similar to ISCysp3.
References
1] ISfinder annotation (2008).
2] Nierman,W.C. (2006) Direct Submission GenBank.
2] Nierman,W.C. (2006) Direct Submission GenBank.