ISMrsp4
- Family IS66
- Group ISBst12
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAXY00000000 | ND | Marinobacter sp. | Marinobacter sp. ELB17 |
DNA section
IS Length : 1725 bp
Ends
IR Length : 23/32
IRL : GTAACTATTCAGCTCAAATTTTCTAAAAAAGTTCTTGACAGGGTTTTGAC
IRR : GTAACTATTCAGCTGGTTTGATTTAAAACGGTCGTATCATTACCCGCACC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCTAATGTAA | AAGCACGC | AATCTATTAA | 8 |
DNA sequence
GTAACTATTCAGCTCAAATTTTCTAAAAAAGTTCTTGACAGGGTTTTGACTTCAATTCCGAGAACTTTGGCCGCACTCAGTGCGAGGCCATAAAGTCGTG
CGCAGAACCTCCACCATCCTCTCGGTGCAGTCTTGTGCTGTCGCTCATCCCCGGGGCGCAGTGGCCTTGAAAAAGTCGCTCAAATCCGCGCTCAGGACGA
AAAATTCGACCTAAGAAAGTCGTGCGATAATAATGAATCACTCGACGGTACTCAGACCCATGAAGATCAGCAACATCGATGTCGACGCCGCGCTGGCGAA
CGTCAGACACCAACTCCAAGCAGACACAACCGTCGCGCCTTCCATGCGGACGGCCATCGAGTTGCTGATTGTGCTGGTCCAGATACTGAGTGGGCGGATT
AACACCCACAGTGCCAACAGCAGCACGCCGCCGTCCCAGGATCCGAACCGCCCCAGACAGAACCGTTTGAAGAGCGGGCGCAAGCCGGGCGGGCAGCCCG
GCCGCATTGGCAAGACGCTGCAACCGGTGGTAGATCCGGATGCCATCCAGCGGGTGAAAGTGGATCGACGCACCTTACCCAAAGGCGGCGCATTTCGGGT
TGTGGGCGTCGAGAAACGTCAGGTCATTGACCTGGACATCCGCCGTTTTGTCACCGAGTACCAGGCCGAGATCCTGGAAAATGCCCAGGGGCAACGTTTT
GTGGCGCCTTTTCCGGTCGGTGTAGAACGCTCGGTTCAGTACGGCCCGCAGCTGAAGGCCCACGCGGTCTATCTGTCGCAATACCAGCTCCTGCCCTATG
ATCGCATCCGCGAGTACTTCGAAGACCAGGTCGGCATCCCACTGAGTGTCGGCTCACTGTTCAACTTCAATCAGGACGCTTTCAATAAGGCCGCTGAATT
TGAGCCGTGGGTCAAGGATCGCCTGGCCGAGGCGTCGGTGGTTCACGCCGATGAAACAGGCGTGAACATCGGTGGTCAACGTCACTGGCTGCACGGCGCA
TCGAATGACCGACTGACCTGGCTTGCGCCCCATGCACAACGAGGCCAGAAAGCGATGAATGCGATCGGCATCCTGCCGCGCTTCAACGGTGTGCTCTGTC
ATGATCACTGGAAGCCGTATTACCGTTATTCATGCTTGCACTCTCTGTGCAATGCGCACCACCTGCGAGAACTTCAGCGCGCCTGGGAGCAGGATAAACA
GGTGTGGGCTCAACGGATGCAAACTCTACTGAACATCATGACCGACAGCGTCGACGACGCCGGCGGCTGCCTGCCACCGGACAAAGCGCAGCGGTGGCGC
AAGGTGTACCGACGCTGCCTGGCAAAAGCGCAAAAAGAGTGCCCGCCACCGGATGAAAGCCTGCGCCAAGGCAAGCCCGGGCGGCTCAAACGCACGCGGG
CACGCAACCTGCTGGAGCGGTTGATCGCCTACGAATCGGATGTGCTACGCTTCCTCGACAATCCAGAGGTACCGTTTACCAACAACCAAGGTGAGCGGGA
CATCCGTATGTTCAAAGTGCAGCAGAAAATATCGGGTTGTTTTCGATCCTTTGAAGGAGCCGAGATCTTCTGTCGCGTGCGCAGTTATCTGTCGACGGCG
CGTAAGCAGAACGTGTCTGCCTCGAAAGCCCTGATGCATTTGTTCGAGGGGAGTATGCCGCCGTTCATGGCGGTGGGTGCGGGTAATGATACGACCGTTT
TAAATCAAACCAGCTGAATAGTTAC
CGCAGAACCTCCACCATCCTCTCGGTGCAGTCTTGTGCTGTCGCTCATCCCCGGGGCGCAGTGGCCTTGAAAAAGTCGCTCAAATCCGCGCTCAGGACGA
AAAATTCGACCTAAGAAAGTCGTGCGATAATAATGAATCACTCGACGGTACTCAGACCCATGAAGATCAGCAACATCGATGTCGACGCCGCGCTGGCGAA
CGTCAGACACCAACTCCAAGCAGACACAACCGTCGCGCCTTCCATGCGGACGGCCATCGAGTTGCTGATTGTGCTGGTCCAGATACTGAGTGGGCGGATT
AACACCCACAGTGCCAACAGCAGCACGCCGCCGTCCCAGGATCCGAACCGCCCCAGACAGAACCGTTTGAAGAGCGGGCGCAAGCCGGGCGGGCAGCCCG
GCCGCATTGGCAAGACGCTGCAACCGGTGGTAGATCCGGATGCCATCCAGCGGGTGAAAGTGGATCGACGCACCTTACCCAAAGGCGGCGCATTTCGGGT
TGTGGGCGTCGAGAAACGTCAGGTCATTGACCTGGACATCCGCCGTTTTGTCACCGAGTACCAGGCCGAGATCCTGGAAAATGCCCAGGGGCAACGTTTT
GTGGCGCCTTTTCCGGTCGGTGTAGAACGCTCGGTTCAGTACGGCCCGCAGCTGAAGGCCCACGCGGTCTATCTGTCGCAATACCAGCTCCTGCCCTATG
ATCGCATCCGCGAGTACTTCGAAGACCAGGTCGGCATCCCACTGAGTGTCGGCTCACTGTTCAACTTCAATCAGGACGCTTTCAATAAGGCCGCTGAATT
TGAGCCGTGGGTCAAGGATCGCCTGGCCGAGGCGTCGGTGGTTCACGCCGATGAAACAGGCGTGAACATCGGTGGTCAACGTCACTGGCTGCACGGCGCA
TCGAATGACCGACTGACCTGGCTTGCGCCCCATGCACAACGAGGCCAGAAAGCGATGAATGCGATCGGCATCCTGCCGCGCTTCAACGGTGTGCTCTGTC
ATGATCACTGGAAGCCGTATTACCGTTATTCATGCTTGCACTCTCTGTGCAATGCGCACCACCTGCGAGAACTTCAGCGCGCCTGGGAGCAGGATAAACA
GGTGTGGGCTCAACGGATGCAAACTCTACTGAACATCATGACCGACAGCGTCGACGACGCCGGCGGCTGCCTGCCACCGGACAAAGCGCAGCGGTGGCGC
AAGGTGTACCGACGCTGCCTGGCAAAAGCGCAAAAAGAGTGCCCGCCACCGGATGAAAGCCTGCGCCAAGGCAAGCCCGGGCGGCTCAAACGCACGCGGG
CACGCAACCTGCTGGAGCGGTTGATCGCCTACGAATCGGATGTGCTACGCTTCCTCGACAATCCAGAGGTACCGTTTACCAACAACCAAGGTGAGCGGGA
CATCCGTATGTTCAAAGTGCAGCAGAAAATATCGGGTTGTTTTCGATCCTTTGAAGGAGCCGAGATCTTCTGTCGCGTGCGCAGTTATCTGTCGACGGCG
CGTAAGCAGAACGTGTCTGCCTCGAAAGCCCTGATGCATTTGTTCGAGGGGAGTATGCCGCCGTTCATGGCGGTGGGTGCGGGTAATGATACGACCGTTT
TAAATCAAACCAGCTGAATAGTTAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1458 bp | 485 aa | 260 | 1717 | + | No |
Chemistry : DDE
ORF sequence :
MKISNIDVDAALANVRHQLQADTTVAPSMRTAIELLIVLVQILSGRINTHSANSSTPPSQDPNRPRQNRLKSGRKPGGQPGRIGKTLQPVVDPDAIQRVK
VDRRTLPKGGAFRVVGVEKRQVIDLDIRRFVTEYQAEILENAQGQRFVAPFPVGVERSVQYGPQLKAHAVYLSQYQLLPYDRIREYFEDQVGIPLSVGSL
FNFNQDAFNKAAEFEPWVKDRLAEASVVHADETGVNIGGQRHWLHGASNDRLTWLAPHAQRGQKAMNAIGILPRFNGVLCHDHWKPYYRYSCLHSLCNAH
HLRELQRAWEQDKQVWAQRMQTLLNIMTDSVDDAGGCLPPDKAQRWRKVYRRCLAKAQKECPPPDESLRQGKPGRLKRTRARNLLERLIAYESDVLRFLD
NPEVPFTNNQGERDIRMFKVQQKISGCFRSFEGAEIFCRVRSYLSTARKQNVSASKALMHLFEGSMPPFMAVGAGNDTTVLNQTS
VDRRTLPKGGAFRVVGVEKRQVIDLDIRRFVTEYQAEILENAQGQRFVAPFPVGVERSVQYGPQLKAHAVYLSQYQLLPYDRIREYFEDQVGIPLSVGSL
FNFNQDAFNKAAEFEPWVKDRLAEASVVHADETGVNIGGQRHWLHGASNDRLTWLAPHAQRGQKAMNAIGILPRFNGVLCHDHWKPYYRYSCLHSLCNAH
HLRELQRAWEQDKQVWAQRMQTLLNIMTDSVDDAGGCLPPDKAQRWRKVYRRCLAKAQKECPPPDESLRQGKPGRLKRTRARNLLERLIAYESDVLRFLD
NPEVPFTNNQGERDIRMFKVQQKISGCFRSFEGAEIFCRVRSYLSTARKQNVSASKALMHLFEGSMPPFMAVGAGNDTTVLNQTS
Blast result :
Comments
ISMrsp4 is 58% aa similar to ISMac24.
References
1] ISfinder annotation (2008).
2] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct Submission GenBank.
2] Ward,B., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2006) Direct Submission GenBank.