ISCku5

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CT573071 ND Candidatus Kuenenia
Candidatus Kuenenia stuttgartiensis
DNA section
IS Length : 1900 bp

Ends


IR Length : 16/18

IRL : GTAACTATTCAGCGAAAATAATTTAGAATTTACTTGACAGCAGAAATGTT
IRR : GTAATTATTCAGCGTAAACGATACACGGCTCGTTCCCAAACCTTGTACTG

Insertion site


Left flankDirect repeatRight flankDR Length
TACAAAATTTGAATGCAAAC0

DNA sequence

GTAACTATTCAGCGAAAATAATTTAGAATTTACTTGACAGCAGAAATGTTACAAACAAGCAATTTACCTGGTAGTGTATGTATATGTTTGTAAATGCGTT
AAAAACAGGCAGCAAGATGCCGTGCATAGAGACGTGTGTGGGGTCTGTTCAGTTATAGAATTTCGAGCCCTTGTGGTGTGTTATAGAGCGAAAGAAAAGG
GTGAAAAAACCTGCAGTATAATAGATGCAGTAGATAATTTCAGGCTAATTATATATACAGGTATCATCCATTGACGATAGAGAATATAGACGTAGACGCA
ACACTCCAAAAAGTAGAGAAGCTACTTTCTGAAGAGAAAGGGCTGTCACCGGCGGTGAGGTCAATGATAGAGTTGTTGGTATTATTGATAACACTGCTGG
CAGGACGTCTGAACCGGAACAGCCGCAACAGCAGCAAGCCGCCCTCAAGTGATCCGAATCGCAAGAGAGAAAGCAAGGCGAAGGGTGAAAGGAAGGCAGG
CGGGCAAAAGGGCCGTGATGGAGTAACGCTCAAAAAGGTAGACAATCCTGATGAGGTGGAAGTAATAAAAGTAGACCGGAGGAAGTATCCGCGCAGCAAA
TACAAGGTGGTAGGTTACGAAGCACGCCAGGTGTTTGATATAAAGATTTCGCGTGTAGTAACGGAGTATCGTGCAGAGGTAGTTGAGGATGCGAAAGGGA
ATCGGATTGTAGCGTCATTTCCGGAAGGGGTAACAAAGGCGGTGCAGTATGGTCCGGATTTGAAAGCGCATGCAGTCTATATGTCGCAGTATCAATTGAT
ACCCTACAAGAGGATACAGGAGTATTTTGAAGGGCAGATTGGTATACCGCTGAGTGAAGGTTCTATTTACAACTTTAACAGGGAAGCCTACGAGTCATTG
GAACCCTTCGATGTGAGAGCCAGGGAAGAACTTACAAAATCAGAGGTGATGCATGTGGATGAAACGGGCATCAACAAGAATGGAGACAGGTATTGGTTGC
ACAGTGCATCCAATAGTTTGTGGACGTACTTTTTCCCACATGAAAGGCGTGGAACAGAAGCGATAAATAGTATTGGTATATTACCTGAATTTAGGGGGAT
TCTTTGCCATGACCATTTGAAGTCGTATTACACCTATAGCAACTGTATGCATGCGTTGTGTAATGCGCACCACTTGAGGGAATTGGAGGGGGTGTGGGAA
GATGATAATAAGCAGGAGTGGGCGAAAGAGATGAAAGCATTACTTAAAGAGATAAACCGTGCGACAAGCGATGCGGGGGGAATACTGGGAACCGATGAGT
CTGAAAAATACCGGCAAAGGTATAGGACGATACTACAAAACGCAGAAGCCGAAAGCTCTCCTCCTGATGAAACGAACCGTAAGGGAAAAAGGGGTAGGGT
AAGAAGGACAAAGGCCCGGAATCTTCTGGAACGATTGAGGAAGTATGAGGGTGATGTGCTGAGGTTTATGGACAATAAAAATGTCCCCTTTACGAACAAT
TTAGCAGAAAACGATATCAGGATGACGAAGGTTCAGCAGAAGATATCTGGTTGTTTTCGTTCTTTGGAGGGAGCGAAAATTTTCTGCCGCATCCGGAGTT
ATCTCTCGACCTGTCGAAAGCAAGGGGTAAATTTGAGTCGGGCATTACAGATGCTATTCCGTGGCGAATTGCCTGATTTTGCTAGCTCGTAGCGACAGTG
GGTGAAAATACGCTGAATAGATACCAAAATTTTGCAATTAGCCTCAATTTTGAGCGGGGATGCTTTAATTTGCTAAAGTTTATGATGGAGAACAGGTGAC
AGAGACGATGCTCTTAAAAGGTAACTATTCAGCGTAAACGATACTATGTTCAGTACAAGGTTTGGGAACGAGCCGTGTATCGTTTACGCTGAATAATTAC
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
207 bp68 aa68274+No
ORF function : Passenger Gene
Annotation : Description :

ORF sequence :

MVVYVYVCKCVKNRQQDAVHRDVCGVCSVIEFRALVVCYRAKEKGEKTCSIIDAVDNFRLIIYTGIIH

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1422 bp473 aa2711692+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

LTIENIDVDATLQKVEKLLSEEKGLSPAVRSMIELLVLLITLLAGRLNRNSRNSSKPPSSDPNRKRESKAKGERKAGGQKGRDGVTLKKVDNPDEVEVIK
VDRRKYPRSKYKVVGYEARQVFDIKISRVVTEYRAEVVEDAKGNRIVASFPEGVTKAVQYGPDLKAHAVYMSQYQLIPYKRIQEYFEGQIGIPLSEGSIY
NFNREAYESLEPFDVRAREELTKSEVMHVDETGINKNGDRYWLHSASNSLWTYFFPHERRGTEAINSIGILPEFRGILCHDHLKSYYTYSNCMHALCNAH
HLRELEGVWEDDNKQEWAKEMKALLKEINRATSDAGGILGTDESEKYRQRYRTILQNAEAESSPPDETNRKGKRGRVRRTKARNLLERLRKYEGDVLRFM
DNKNVPFTNNLAENDIRMTKVQQKISGCFRSLEGAKIFCRIRSYLSTCRKQGVNLSRALQMLFRGELPDFASS

 

Blast result :
Comments
ISCku5 is 61% aa similar to ISMac24.
The first ORF is a passenger gene.
References
1] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D. (2006) Nature 440 (7085), 790-794

2] ISfinder annotation (2008).