ISCku5
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CT573071 | ND | Candidatus Kuenenia | Candidatus Kuenenia stuttgartiensis |
DNA section
IS Length : 1900 bp
Ends
IR Length : 16/18
IRL : GTAACTATTCAGCGAAAATAATTTAGAATTTACTTGACAGCAGAAATGTT
IRR : GTAATTATTCAGCGTAAACGATACACGGCTCGTTCCCAAACCTTGTACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TACAAAATTT | GAATGCAAAC | 0 |
DNA sequence
GTAACTATTCAGCGAAAATAATTTAGAATTTACTTGACAGCAGAAATGTTACAAACAAGCAATTTACCTGGTAGTGTATGTATATGTTTGTAAATGCGTT
AAAAACAGGCAGCAAGATGCCGTGCATAGAGACGTGTGTGGGGTCTGTTCAGTTATAGAATTTCGAGCCCTTGTGGTGTGTTATAGAGCGAAAGAAAAGG
GTGAAAAAACCTGCAGTATAATAGATGCAGTAGATAATTTCAGGCTAATTATATATACAGGTATCATCCATTGACGATAGAGAATATAGACGTAGACGCA
ACACTCCAAAAAGTAGAGAAGCTACTTTCTGAAGAGAAAGGGCTGTCACCGGCGGTGAGGTCAATGATAGAGTTGTTGGTATTATTGATAACACTGCTGG
CAGGACGTCTGAACCGGAACAGCCGCAACAGCAGCAAGCCGCCCTCAAGTGATCCGAATCGCAAGAGAGAAAGCAAGGCGAAGGGTGAAAGGAAGGCAGG
CGGGCAAAAGGGCCGTGATGGAGTAACGCTCAAAAAGGTAGACAATCCTGATGAGGTGGAAGTAATAAAAGTAGACCGGAGGAAGTATCCGCGCAGCAAA
TACAAGGTGGTAGGTTACGAAGCACGCCAGGTGTTTGATATAAAGATTTCGCGTGTAGTAACGGAGTATCGTGCAGAGGTAGTTGAGGATGCGAAAGGGA
ATCGGATTGTAGCGTCATTTCCGGAAGGGGTAACAAAGGCGGTGCAGTATGGTCCGGATTTGAAAGCGCATGCAGTCTATATGTCGCAGTATCAATTGAT
ACCCTACAAGAGGATACAGGAGTATTTTGAAGGGCAGATTGGTATACCGCTGAGTGAAGGTTCTATTTACAACTTTAACAGGGAAGCCTACGAGTCATTG
GAACCCTTCGATGTGAGAGCCAGGGAAGAACTTACAAAATCAGAGGTGATGCATGTGGATGAAACGGGCATCAACAAGAATGGAGACAGGTATTGGTTGC
ACAGTGCATCCAATAGTTTGTGGACGTACTTTTTCCCACATGAAAGGCGTGGAACAGAAGCGATAAATAGTATTGGTATATTACCTGAATTTAGGGGGAT
TCTTTGCCATGACCATTTGAAGTCGTATTACACCTATAGCAACTGTATGCATGCGTTGTGTAATGCGCACCACTTGAGGGAATTGGAGGGGGTGTGGGAA
GATGATAATAAGCAGGAGTGGGCGAAAGAGATGAAAGCATTACTTAAAGAGATAAACCGTGCGACAAGCGATGCGGGGGGAATACTGGGAACCGATGAGT
CTGAAAAATACCGGCAAAGGTATAGGACGATACTACAAAACGCAGAAGCCGAAAGCTCTCCTCCTGATGAAACGAACCGTAAGGGAAAAAGGGGTAGGGT
AAGAAGGACAAAGGCCCGGAATCTTCTGGAACGATTGAGGAAGTATGAGGGTGATGTGCTGAGGTTTATGGACAATAAAAATGTCCCCTTTACGAACAAT
TTAGCAGAAAACGATATCAGGATGACGAAGGTTCAGCAGAAGATATCTGGTTGTTTTCGTTCTTTGGAGGGAGCGAAAATTTTCTGCCGCATCCGGAGTT
ATCTCTCGACCTGTCGAAAGCAAGGGGTAAATTTGAGTCGGGCATTACAGATGCTATTCCGTGGCGAATTGCCTGATTTTGCTAGCTCGTAGCGACAGTG
GGTGAAAATACGCTGAATAGATACCAAAATTTTGCAATTAGCCTCAATTTTGAGCGGGGATGCTTTAATTTGCTAAAGTTTATGATGGAGAACAGGTGAC
AGAGACGATGCTCTTAAAAGGTAACTATTCAGCGTAAACGATACTATGTTCAGTACAAGGTTTGGGAACGAGCCGTGTATCGTTTACGCTGAATAATTAC
AAAAACAGGCAGCAAGATGCCGTGCATAGAGACGTGTGTGGGGTCTGTTCAGTTATAGAATTTCGAGCCCTTGTGGTGTGTTATAGAGCGAAAGAAAAGG
GTGAAAAAACCTGCAGTATAATAGATGCAGTAGATAATTTCAGGCTAATTATATATACAGGTATCATCCATTGACGATAGAGAATATAGACGTAGACGCA
ACACTCCAAAAAGTAGAGAAGCTACTTTCTGAAGAGAAAGGGCTGTCACCGGCGGTGAGGTCAATGATAGAGTTGTTGGTATTATTGATAACACTGCTGG
CAGGACGTCTGAACCGGAACAGCCGCAACAGCAGCAAGCCGCCCTCAAGTGATCCGAATCGCAAGAGAGAAAGCAAGGCGAAGGGTGAAAGGAAGGCAGG
CGGGCAAAAGGGCCGTGATGGAGTAACGCTCAAAAAGGTAGACAATCCTGATGAGGTGGAAGTAATAAAAGTAGACCGGAGGAAGTATCCGCGCAGCAAA
TACAAGGTGGTAGGTTACGAAGCACGCCAGGTGTTTGATATAAAGATTTCGCGTGTAGTAACGGAGTATCGTGCAGAGGTAGTTGAGGATGCGAAAGGGA
ATCGGATTGTAGCGTCATTTCCGGAAGGGGTAACAAAGGCGGTGCAGTATGGTCCGGATTTGAAAGCGCATGCAGTCTATATGTCGCAGTATCAATTGAT
ACCCTACAAGAGGATACAGGAGTATTTTGAAGGGCAGATTGGTATACCGCTGAGTGAAGGTTCTATTTACAACTTTAACAGGGAAGCCTACGAGTCATTG
GAACCCTTCGATGTGAGAGCCAGGGAAGAACTTACAAAATCAGAGGTGATGCATGTGGATGAAACGGGCATCAACAAGAATGGAGACAGGTATTGGTTGC
ACAGTGCATCCAATAGTTTGTGGACGTACTTTTTCCCACATGAAAGGCGTGGAACAGAAGCGATAAATAGTATTGGTATATTACCTGAATTTAGGGGGAT
TCTTTGCCATGACCATTTGAAGTCGTATTACACCTATAGCAACTGTATGCATGCGTTGTGTAATGCGCACCACTTGAGGGAATTGGAGGGGGTGTGGGAA
GATGATAATAAGCAGGAGTGGGCGAAAGAGATGAAAGCATTACTTAAAGAGATAAACCGTGCGACAAGCGATGCGGGGGGAATACTGGGAACCGATGAGT
CTGAAAAATACCGGCAAAGGTATAGGACGATACTACAAAACGCAGAAGCCGAAAGCTCTCCTCCTGATGAAACGAACCGTAAGGGAAAAAGGGGTAGGGT
AAGAAGGACAAAGGCCCGGAATCTTCTGGAACGATTGAGGAAGTATGAGGGTGATGTGCTGAGGTTTATGGACAATAAAAATGTCCCCTTTACGAACAAT
TTAGCAGAAAACGATATCAGGATGACGAAGGTTCAGCAGAAGATATCTGGTTGTTTTCGTTCTTTGGAGGGAGCGAAAATTTTCTGCCGCATCCGGAGTT
ATCTCTCGACCTGTCGAAAGCAAGGGGTAAATTTGAGTCGGGCATTACAGATGCTATTCCGTGGCGAATTGCCTGATTTTGCTAGCTCGTAGCGACAGTG
GGTGAAAATACGCTGAATAGATACCAAAATTTTGCAATTAGCCTCAATTTTGAGCGGGGATGCTTTAATTTGCTAAAGTTTATGATGGAGAACAGGTGAC
AGAGACGATGCTCTTAAAAGGTAACTATTCAGCGTAAACGATACTATGTTCAGTACAAGGTTTGGGAACGAGCCGTGTATCGTTTACGCTGAATAATTAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
207 bp | 68 aa | 68 | 274 | + | No |
Annotation : Description :
ORF sequence :
MVVYVYVCKCVKNRQQDAVHRDVCGVCSVIEFRALVVCYRAKEKGEKTCSIIDAVDNFRLIIYTGIIH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1422 bp | 473 aa | 271 | 1692 | + | No |
Chemistry : DDE
ORF sequence :
LTIENIDVDATLQKVEKLLSEEKGLSPAVRSMIELLVLLITLLAGRLNRNSRNSSKPPSSDPNRKRESKAKGERKAGGQKGRDGVTLKKVDNPDEVEVIK
VDRRKYPRSKYKVVGYEARQVFDIKISRVVTEYRAEVVEDAKGNRIVASFPEGVTKAVQYGPDLKAHAVYMSQYQLIPYKRIQEYFEGQIGIPLSEGSIY
NFNREAYESLEPFDVRAREELTKSEVMHVDETGINKNGDRYWLHSASNSLWTYFFPHERRGTEAINSIGILPEFRGILCHDHLKSYYTYSNCMHALCNAH
HLRELEGVWEDDNKQEWAKEMKALLKEINRATSDAGGILGTDESEKYRQRYRTILQNAEAESSPPDETNRKGKRGRVRRTKARNLLERLRKYEGDVLRFM
DNKNVPFTNNLAENDIRMTKVQQKISGCFRSLEGAKIFCRIRSYLSTCRKQGVNLSRALQMLFRGELPDFASS
VDRRKYPRSKYKVVGYEARQVFDIKISRVVTEYRAEVVEDAKGNRIVASFPEGVTKAVQYGPDLKAHAVYMSQYQLIPYKRIQEYFEGQIGIPLSEGSIY
NFNREAYESLEPFDVRAREELTKSEVMHVDETGINKNGDRYWLHSASNSLWTYFFPHERRGTEAINSIGILPEFRGILCHDHLKSYYTYSNCMHALCNAH
HLRELEGVWEDDNKQEWAKEMKALLKEINRATSDAGGILGTDESEKYRQRYRTILQNAEAESSPPDETNRKGKRGRVRRTKARNLLERLRKYEGDVLRFM
DNKNVPFTNNLAENDIRMTKVQQKISGCFRSLEGAKIFCRIRSYLSTCRKQGVNLSRALQMLFRGELPDFASS
Blast result :
Comments
ISCku5 is 61% aa similar to ISMac24.
The first ORF is a passenger gene.
The first ORF is a passenger gene.
References
1] Strous,M., Pelletier,E., Mangenot,S., Rattei,T., Lehner,A., Taylor,M.W., Horn,M., Daims,H., Bartol-Mavel,D., Wincker,P., Barbe,V., Fonknechten,N., Vallenet,D., Segurens,B., Schenowitz-Truong,C., Medigue,C., Collingro,A., Snel,B., Dutilh,B.E., Op den Camp,H.J., van der Drift,C., Cirpus,I., van de Pas-Schoonen,K.T., Harhangi,H.R., van Niftrik,L., Schmid,M., Keltjens,J., van de Vossenberg,J., Kartal,B., Meier,H., Frishman,D., Huynen,M.A., Mewes,H.W., Weissenbach,J., Jetten,M.S., Wagner,M. and Le Paslier,D. (2006) Nature 440 (7085), 790-794
2] ISfinder annotation (2008).
2] ISfinder annotation (2008).