ISfinder Mirror Site

ISSoc4

Family IS630
Group

MGE type ISRelated element(s) :
Isoform Synonym(s)

Accession number	Transposition	Origin	Host
NC_007775	ND	Synechococcus sp.	Synechococcus sp. JA-3-3Ab

DNA section

IS Length : 1017 bp

Ends

IR Length : 18/27

IRL : CAGCCTTTTAATTTAAAATAGGGTACAGGTATTCAAGAGGAAGGAGAGAA
IRR : CAGCCTGTTAAGGGCTCAAGGGGTACAATAGCAGCACTTAGCAAACCAAC

Insertion site

Left flank	Direct repeat	Right flank	DR Length
TGGAAATAAG	TA	GCTGTGTCGT	2
AGCAAGGGCT	TA	ATATCTCGCT	2
AAGTTTTGGT	TA	CTTGCCACAG	2
CCATACTGAT	TA	CAAGCTGATA	2
GGAGCTGAGA	TA	TCTTAAAGGG	2
GCGTATAAGA	TA	TCAACCCGCT	2
TTGGAGCAGT	TA	TCACCCGACG	2
CCTAGACAGG	TA	CTCAATAAAG	2
CGACGAAAAG	TA	TCGCCGGACG	2
CGTCGGGTGA	TA	ACTGCTCCAA	2
TGGAAATAAG	TA	ACACTCTGGA	2
CTATCTCCCT	TA	TCTGGAGTTT	2
GGAGATGAGC	TA	CCACCCATCA	2

DNA sequence

CAGCCTTTTAATTTAAAATAGGGTACAGGTATTCAAGAGGAAGGAGAGAAAGGAATGCCGACTCATTCTTTGGATTTGCGGCAAAGAGTTGTAGCAGCCT
ATCAGGCAGGTAACACCTCCATCCGCCAGGTAGCTAAACGCTTCATGGTGACCAAAAGAACAGTACACCGCTGGGTGCGTCAGTACCAACAAACTCAAGA
TTTAGCCCCTAAGAAAGCAGGCACCAAGCGAGTGGGCATTTTGGAACAACATCGGCAGGAAGTGATGGCAATTATTACAGAACACCCAGACTTCTACCTG
TGGCAGTATCAAGAACTGTTGCGCGAGCGCTTAGGAATCAATGTAAGCATCGTCACGATACATAATTTCTTGAAAAAGCAAGGAATGACTCTAAAAAAAA
AGACCTACCGCAGTGCAAAAGTCAAAGAAGAGGAGGTGCAAAGGGAACGACTAGCTTATAGTCAAGAAGTCAGGAATATTCCAGCGGAGGATTTGATTGC
CATCGACCAGACGGCAGTCTGGGAGGGAATGGAGTGGAGAGTATCTCGGAGTTTACGTGGTCAAAGGGCTTATCATTATCGTCAGAGATACAAGGGTGAA
AAGTATACGGTTATTGGAGCTATTTCCTTGAGAGGTGTAGTTGGCTGTCGTGTCATCAAGGGTGGGATGAAGAAAGGAGACTTTTTGGAGTTTTTGAGAA
GCGAGCTATGTCCGAAGCTAGATGCGAGGAAGGTTGTGATTATGGACAATTTAAATATCCACAAGAGTCGGGAAGTTGAGGAATTGATTAGGGGGACAGG
AGCACGAATCCTATACCTGCCTGTGTATGCGCCGGAGTTGAATCCCATTGAGATGATGTGGTCGGTATTGAAGCATTTTATTCGGCAGCTTTGCAGAATT
GGGAAATATAGCATGGAGCAGATAGTGAAGACTTCTTTACTACTGATCAATCCATCCTCCTTCCGAAGTTGGTTTGCTAAGTGCTGCTATTGTACCCCTT
GAGCCCTTAACAGGCTG

Protein section

ORF number : 1

ORF 1

Length		Begin	End	Strand	Fusion ORF
948 bp	315 aa	55	1002	+	No

ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPTHSLDLRQRVVAAYQAGNTSIRQVAKRFMVTKRTVHRWVRQYQQTQDLAPKKAGTKRVGILEQHRQEVMAIITEHPDFYLWQYQELLRERLGINVSIV
TIHNFLKKQGMTLKKKTYRSAKVKEEEVQRERLAYSQEVRNIPAEDLIAIDQTAVWEGMEWRVSRSLRGQRAYHYRQRYKGEKYTVIGAISLRGVVGCRV
IKGGMKKGDFLEFLRSELCPKLDARKVVIMDNLNIHKSREVEELIRGTGARILYLPVYAPELNPIEMMWSVLKHFIRQLCRIGKYSMEQIVKTSLLLINP
SSFRSWFAKCCYCTP

Blast result :

Comments

ISSoc4 is 49% aa similar to ISRm10.

References

1] Allewalt,J.P., Bateson,M.M., Revsbech,N.P., Slack,K. and Ward,D.M. (2006) Appl. Environ. Microbiol. 72 (1), 544-550.
2] Bateson,M.M. and Ward,D.M. (2006) Direct Submission GenBank.
3] Heidelberg,J. (2005) Direct Submission GenBank.