ISTth5
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_005835 | ND | Thermus thermophilus | Thermus thermophilus HB27 plasmid pTT27 Thermus thermophilus HB27 |
DNA section
IS Length : 1263 bp
Ends
IR Length : 23/29
IRL : GGTAGCGTTGCGAATCTTGTGTAAGCCCGCCTAAGCGAAAGGGGGTACCT
IRR : GGTAGTGTCCCGAATTTTGTGTACGCCCCCACCTAAGCCTGGGGGTATCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCCTCTTCAAG | CGGCCGCGTAC | 0 |
DNA sequence
GGTAGCGTTGCGAATCTTGTGTAAGCCCGCCTAAGCGAAAGGGGGTACCTGTGAGAGAGACAGGAGGTACCCCATGCACGACTTTAGCATTGACCGGAGC
TGGCTGGATGCAGTCGTCAGGGAAGCCGTCAAGCAAGCGCTGGAAACGGTGATGGAGTTGGAACGCGAGGTTTTCCTAGCGGAGTGGGGCGGAAAGAAGA
ACGGGTACTACGAGCGTGGCTTGGTCACCAAACACGGTCCGGTGCGCCTGCGGGTGCCCAGGGAGCGGGATGGCCGCTTCCACACCGCTCTGTTCGCTCC
CTACCGACGCCGGATGGAGGACCTTGAGGCTTTTGCCCTGGCCATGTACGCCGCCGGCATCTCCACGCGAAAGGTGGGCGAGGTCCTTGGGTATCTGCTG
GGTGGGACCTACAGCGCCAGCACCATCAGTCGCATTGCAGAGGGAGTGCTACCCAGGCTGGAGGCTTTCAGGAAGCGCCCTCTTAAGCCGCGCTACGCCT
TCGTCTACCTGGACGCTTTATTCGTCAAGGTGTTCCAGGAAAACGAAGGTGTAGCCACCGAGGCCGCCTACCTGGCCCTGGGCATCACCGAGGAAGGTTA
CCGGGAAGTTCTTGGATTTTGGCTTTTGCCCACGGAGTCAAGCACGGGCTGGGGCGACCTGCTCCTTGAGCTCAAGGAGCGAGGGCTCGAAGAGGTGCTG
CTTTTCATCACCGATGAACTGCCGGGAGTCGAGACCGCGATCAAGCGCGTCTACCCCAAAGCCCACTGGCAGCTCTGCACCGTGCACAAGCTGCGTTCCA
CCCTGCGGCGGGTGCGCAGGAAGGATCAGGATGCGGTGCTTCGGGACCTCTCGTCCATCGTCCGGGCGTCCGATCGGAACGAAGCCTTAAAGGCGCTGAA
CAGCTTCAGGGGTCGCTGGGCCGATAAGTACCCTCAGGTGGTGGCAAGTTGGATTCAGCACTCTGCGGCTTTGCTGCGCTTCTTGGACTACCCTAAGGCT
CTGCAGCCGGTGATCAAGAGCGCCAACCTGCTTGAGCGAATGATCAAGGAGGTTAAGCGCACCACCAAGACCCGGGACAACACCTTTCCCACACCCGATG
CCGTACTCAAGGTGATCTACTTCGTGGCCGAGCGATACGAGGCGCAGTTTCAGACGAGAAAGCTCCAGGGCTTCCAGCAGGCAGAGGATGAGATCCGTGC
TATCTTCAATCTCAGATACCCCCAGGCTTAGGTGGGGGCGTACACAAAATTCGGGACACTACC
TGGCTGGATGCAGTCGTCAGGGAAGCCGTCAAGCAAGCGCTGGAAACGGTGATGGAGTTGGAACGCGAGGTTTTCCTAGCGGAGTGGGGCGGAAAGAAGA
ACGGGTACTACGAGCGTGGCTTGGTCACCAAACACGGTCCGGTGCGCCTGCGGGTGCCCAGGGAGCGGGATGGCCGCTTCCACACCGCTCTGTTCGCTCC
CTACCGACGCCGGATGGAGGACCTTGAGGCTTTTGCCCTGGCCATGTACGCCGCCGGCATCTCCACGCGAAAGGTGGGCGAGGTCCTTGGGTATCTGCTG
GGTGGGACCTACAGCGCCAGCACCATCAGTCGCATTGCAGAGGGAGTGCTACCCAGGCTGGAGGCTTTCAGGAAGCGCCCTCTTAAGCCGCGCTACGCCT
TCGTCTACCTGGACGCTTTATTCGTCAAGGTGTTCCAGGAAAACGAAGGTGTAGCCACCGAGGCCGCCTACCTGGCCCTGGGCATCACCGAGGAAGGTTA
CCGGGAAGTTCTTGGATTTTGGCTTTTGCCCACGGAGTCAAGCACGGGCTGGGGCGACCTGCTCCTTGAGCTCAAGGAGCGAGGGCTCGAAGAGGTGCTG
CTTTTCATCACCGATGAACTGCCGGGAGTCGAGACCGCGATCAAGCGCGTCTACCCCAAAGCCCACTGGCAGCTCTGCACCGTGCACAAGCTGCGTTCCA
CCCTGCGGCGGGTGCGCAGGAAGGATCAGGATGCGGTGCTTCGGGACCTCTCGTCCATCGTCCGGGCGTCCGATCGGAACGAAGCCTTAAAGGCGCTGAA
CAGCTTCAGGGGTCGCTGGGCCGATAAGTACCCTCAGGTGGTGGCAAGTTGGATTCAGCACTCTGCGGCTTTGCTGCGCTTCTTGGACTACCCTAAGGCT
CTGCAGCCGGTGATCAAGAGCGCCAACCTGCTTGAGCGAATGATCAAGGAGGTTAAGCGCACCACCAAGACCCGGGACAACACCTTTCCCACACCCGATG
CCGTACTCAAGGTGATCTACTTCGTGGCCGAGCGATACGAGGCGCAGTTTCAGACGAGAAAGCTCCAGGGCTTCCAGCAGGCAGAGGATGAGATCCGTGC
TATCTTCAATCTCAGATACCCCCAGGCTTAGGTGGGGGCGTACACAAAATTCGGGACACTACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1158 bp | 385 aa | 74 | 1231 | + | No |
Chemistry : DDE
ORF sequence :
MHDFSIDRSWLDAVVREAVKQALETVMELEREVFLAEWGGKKNGYYERGLVTKHGPVRLRVPRERDGRFHTALFAPYRRRMEDLEAFALAMYAAGISTRK
VGEVLGYLLGGTYSASTISRIAEGVLPRLEAFRKRPLKPRYAFVYLDALFVKVFQENEGVATEAAYLALGITEEGYREVLGFWLLPTESSTGWGDLLLEL
KERGLEEVLLFITDELPGVETAIKRVYPKAHWQLCTVHKLRSTLRRVRRKDQDAVLRDLSSIVRASDRNEALKALNSFRGRWADKYPQVVASWIQHSAAL
LRFLDYPKALQPVIKSANLLERMIKEVKRTTKTRDNTFPTPDAVLKVIYFVAERYEAQFQTRKLQGFQQAEDEIRAIFNLRYPQA
VGEVLGYLLGGTYSASTISRIAEGVLPRLEAFRKRPLKPRYAFVYLDALFVKVFQENEGVATEAAYLALGITEEGYREVLGFWLLPTESSTGWGDLLLEL
KERGLEEVLLFITDELPGVETAIKRVYPKAHWQLCTVHKLRSTLRRVRRKDQDAVLRDLSSIVRASDRNEALKALNSFRGRWADKYPQVVASWIQHSAAL
LRFLDYPKALQPVIKSANLLERMIKEVKRTTKTRDNTFPTPDAVLKVIYFVAERYEAQFQTRKLQGFQQAEDEIRAIFNLRYPQA
Blast result :
Comments
ISTth5 is 65% aa similar to ISTth4.
References
1] Henne,A., Bruggemann,H., Raasch,C., Wiezer,A., Hartsch,T., Liesegang,H., Johann,A., Lienard,T., Gohl,O., Martinez-Arias,R., Jacobi,C., Starkuviene,V., Schlenczeck,S., Dencker,S., Huber,R., Klenk,H.P., Kramer,W., Merkl,R., Gottschalk,G. and Fritz,H.J. (2004) Nat. Biotechnol. 22 (5), 547-553