ISTth5

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_005835 ND Thermus thermophilus
Thermus thermophilus HB27 plasmid pTT27
Thermus thermophilus HB27
DNA section
IS Length : 1263 bp

Ends


IR Length : 23/29

IRL : GGTAGCGTTGCGAATCTTGTGTAAGCCCGCCTAAGCGAAAGGGGGTACCT
IRR : GGTAGTGTCCCGAATTTTGTGTACGCCCCCACCTAAGCCTGGGGGTATCT

Insertion site


Left flankDirect repeatRight flankDR Length
GCCCTCTTCAAGCGGCCGCGTAC0

DNA sequence

GGTAGCGTTGCGAATCTTGTGTAAGCCCGCCTAAGCGAAAGGGGGTACCTGTGAGAGAGACAGGAGGTACCCCATGCACGACTTTAGCATTGACCGGAGC
TGGCTGGATGCAGTCGTCAGGGAAGCCGTCAAGCAAGCGCTGGAAACGGTGATGGAGTTGGAACGCGAGGTTTTCCTAGCGGAGTGGGGCGGAAAGAAGA
ACGGGTACTACGAGCGTGGCTTGGTCACCAAACACGGTCCGGTGCGCCTGCGGGTGCCCAGGGAGCGGGATGGCCGCTTCCACACCGCTCTGTTCGCTCC
CTACCGACGCCGGATGGAGGACCTTGAGGCTTTTGCCCTGGCCATGTACGCCGCCGGCATCTCCACGCGAAAGGTGGGCGAGGTCCTTGGGTATCTGCTG
GGTGGGACCTACAGCGCCAGCACCATCAGTCGCATTGCAGAGGGAGTGCTACCCAGGCTGGAGGCTTTCAGGAAGCGCCCTCTTAAGCCGCGCTACGCCT
TCGTCTACCTGGACGCTTTATTCGTCAAGGTGTTCCAGGAAAACGAAGGTGTAGCCACCGAGGCCGCCTACCTGGCCCTGGGCATCACCGAGGAAGGTTA
CCGGGAAGTTCTTGGATTTTGGCTTTTGCCCACGGAGTCAAGCACGGGCTGGGGCGACCTGCTCCTTGAGCTCAAGGAGCGAGGGCTCGAAGAGGTGCTG
CTTTTCATCACCGATGAACTGCCGGGAGTCGAGACCGCGATCAAGCGCGTCTACCCCAAAGCCCACTGGCAGCTCTGCACCGTGCACAAGCTGCGTTCCA
CCCTGCGGCGGGTGCGCAGGAAGGATCAGGATGCGGTGCTTCGGGACCTCTCGTCCATCGTCCGGGCGTCCGATCGGAACGAAGCCTTAAAGGCGCTGAA
CAGCTTCAGGGGTCGCTGGGCCGATAAGTACCCTCAGGTGGTGGCAAGTTGGATTCAGCACTCTGCGGCTTTGCTGCGCTTCTTGGACTACCCTAAGGCT
CTGCAGCCGGTGATCAAGAGCGCCAACCTGCTTGAGCGAATGATCAAGGAGGTTAAGCGCACCACCAAGACCCGGGACAACACCTTTCCCACACCCGATG
CCGTACTCAAGGTGATCTACTTCGTGGCCGAGCGATACGAGGCGCAGTTTCAGACGAGAAAGCTCCAGGGCTTCCAGCAGGCAGAGGATGAGATCCGTGC
TATCTTCAATCTCAGATACCCCCAGGCTTAGGTGGGGGCGTACACAAAATTCGGGACACTACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1158 bp385 aa741231+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHDFSIDRSWLDAVVREAVKQALETVMELEREVFLAEWGGKKNGYYERGLVTKHGPVRLRVPRERDGRFHTALFAPYRRRMEDLEAFALAMYAAGISTRK
VGEVLGYLLGGTYSASTISRIAEGVLPRLEAFRKRPLKPRYAFVYLDALFVKVFQENEGVATEAAYLALGITEEGYREVLGFWLLPTESSTGWGDLLLEL
KERGLEEVLLFITDELPGVETAIKRVYPKAHWQLCTVHKLRSTLRRVRRKDQDAVLRDLSSIVRASDRNEALKALNSFRGRWADKYPQVVASWIQHSAAL
LRFLDYPKALQPVIKSANLLERMIKEVKRTTKTRDNTFPTPDAVLKVIYFVAERYEAQFQTRKLQGFQQAEDEIRAIFNLRYPQA

 

Blast result :
Comments
ISTth5 is 65% aa similar to ISTth4.
References
1] Henne,A., Bruggemann,H., Raasch,C., Wiezer,A., Hartsch,T., Liesegang,H., Johann,A., Lienard,T., Gohl,O., Martinez-Arias,R., Jacobi,C., Starkuviene,V., Schlenczeck,S., Dencker,S., Huber,R., Klenk,H.P., Kramer,W., Merkl,R., Gottschalk,G. and Fritz,H.J. (2004) Nat. Biotechnol. 22 (5), 547-553