ISPto6

  • Family IS1380
  • Group IS942
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_AAPR01000014 ND Psychroflexus torquis
Psychroflexus torquis ATCC 700755
DNA section
IS Length : 1692 bp

Ends


IR Length : 20/25

IRL : CCTTAACTCCGCAAAACTTTATAGTTTTTTTTAGAAGAAAGCACTGTGTA
IRR : CCTTAAATCCGCAAGCCACTTTAAATCTACAAAATTTATATCAAAGAATG

Insertion site


Left flankDirect repeatRight flankDR Length
TTTCATAGCAATAATCAAAAAATAG5

DNA sequence

CCTTAACTCCGCAAAACTTTATAGTTTTTTTTAGAAGAAAGCACTGTGTATAAAAGATTACACACAGTGTTTCAATGTAAATTTTTTCACTTATTTTAGT
GATGTCAAAGTCATAAAACAGCTTAAGATATTTACAATGATAAAAGTACAAAATTATAAGAAATCTGTAAGTCCTTTTTCGGGAATTTCATTTGTTAACG
AATCCTTCAACAGTATAGGTTTGTCAAGTTTAATAGATTCAGAACTAGGTGAAAGAGTTAAATACGCTGGTTATTCTTACAGCGAAATAATCAGAAGCCT
AACCAATGTATTTTTAAGTGGAGGCGATGTTATTGAAGATGTTAGTTCTCATTTAGGCACACATTTAAAGGAAATTCCCAATAACAATGTTCCCAGCCCA
GATACGATACAAAGAGGTCTCAAGGAATTAACCACAGAGAACATTGTTCATCAATCAAAATCTGGCTTATGTTATGATTTTAACGTCAATAAAAAGCTAA
ATTTACTCAACATCAAATCTTTGCTTTTAACTAAACAATTGGAATCAAATAAGGATTACGATTTTGATTACGACAATCAAATAACAGCAAATAAAAAGTA
TGATGCTAAACGCACATACAAGAAGAATAAAGGTTACTTCCCAGGTGTAGCAACGATTGGCGACAATATTGTTTATATTGAAAACCGAGACGGAAATGCC
AATGTAAAGTTTAAGCAAGCAGAAACATTACAGAATGCCTATGGTCTATTGAAGTCGCAAGACATTACCATAAATCGTTCAAGAATGGATGCTGGTTCGT
ATTCAAAAGATATTATAGAGGTGGTTGCAAAAAACAGTAAACTCTTTTACATAAGAGCCAATAAAAGTGATACTGTTTTTGAACAAATACTAGAAATAAG
TGACTGGATAGACATTGAATTAAACTACAAAAACTATCAAGTAGCTTCGATAAAGTTTAAGCAATTTAACGAGGATAAAAATTACCGTTTGGTAATTATG
CGTGAAAAAACTTCGAACAATCAGATAGATGTATTTACTGGTGATGCTTTTAAATACCGTTCAATACTTACAAATGATTGGAAGAATACAGAAAAACAAA
TTATCGAATATTACAATAATAGAGGAACAAGTGAAAAGATTTTTGATGTAATGAATAATGATTTTGGCTGGAAACGAATGCCTTTTTCGTTTCTAAATCA
AAATAACACCTTTATGATTGTTACAGCAATGATCAAAAATTTCTATACTTATTTTGTAGGTTTAGTATCAAAAGTGTTTGATAATATTTCACCAACAACT
CGCATTAAAAGGTTTGTTTTTAGATTCATAAACGTGGCAGGCAAATGGGTTCACCAAAGTAGGGGTTGGGTTTTAAAACTCTACAGTAAATCACCTTACA
AACAGCTTTTAATTTAAAAAAAACGACTTGTTTTTTTAACAAAACAGGATAATTATGCCTTGTTACAAGACTTATATAAACTCAAACAATTGATTTAAAG
AATTTTAGTAAAAATGTTTTTATTTTCTGAAATTAGAGAAACCTCTAGATATCATTAGAAAAAAAAACACGATTTCCAAATCAGTAAGGCAAGTAAAATG
CTATTTAATTACTCAAATCTGTCTCAAAATAAACTCAAAACACATTCTTTGATATAAATTTTGTAGATTTAAAGTGGCTTGCGGATTTAAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1281 bp426 aa1371417+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MIKVQNYKKSVSPFSGISFVNESFNSIGLSSLIDSELGERVKYAGYSYSEIIRSLTNVFLSGGDVIEDVSSHLGTHLKEIPNNNVPSPDTIQRGLKELTT
ENIVHQSKSGLCYDFNVNKKLNLLNIKSLLLTKQLESNKDYDFDYDNQITANKKYDAKRTYKKNKGYFPGVATIGDNIVYIENRDGNANVKFKQAETLQN
AYGLLKSQDITINRSRMDAGSYSKDIIEVVAKNSKLFYIRANKSDTVFEQILEISDWIDIELNYKNYQVASIKFKQFNEDKNYRLVIMREKTSNNQIDVF
TGDAFKYRSILTNDWKNTEKQIIEYYNNRGTSEKIFDVMNNDFGWKRMPFSFLNQNNTFMIVTAMIKNFYTYFVGLVSKVFDNISPTTRIKRFVFRFINV
AGKWVHQSRGWVLKLYSKSPYKQLLI

 

Blast result :
Comments
ISPto6 is 66% aa similar to IS942.
References
1] Bowman,J., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct Submission GenBank.

2] ISfinder annotation (2008).