ISRme9
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006525 | ND | Ralstonia metallidurans | Ralstonia metallidurans CH34 plasmid pMOL28 |
DNA section
IS Length : 2688 bp
Ends
IR Length : 39/47
IRL : TGCGTATTTCGGGGCGCGTGATCAGCGATTTCGGGGGAACGTGATCACCT
IRR : TGCGGATTTCGGTGAAGGTGATCAGCGGTTTCGGCGAACGTGATCAGGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCGACATTCC | CC | TTCCCCGCCGCATCGTAG | 2 |
DNA sequence
TGCGTATTTCGGGGCGCGTGATCAGCGATTTCGGGGGAACGTGATCACCTGTTTCGGGCGGATGCTGATCGCTGGTTTCGGCGGAACGTGATCACTTCGG
CGATGCCGCCGAAATCGGTGATCAGCTTCCCGAAACGAGTGATCACGTTGCCGAAATAGGTGATCAAGCAGCCGAAATGGGTGATCACGCACCGCAATGG
GGCCGGGGTTAGGGGTGGGACTGCGCATGGACTAGAACGCCGGCGATACGCTGCTTCCTTTTTCAAGGAAGCAAGCTGATGCCGGCCAACCGGATGACCA
TGCGCAAAATCAAGGAAGTGCTTCGCCTGAAGTGGGCGTGTGGCCTTTCGCACCGGCAGATCGCTAGGGCGACGGGTGTGAGTGTTGGCGCCGTTTCGCA
GTACGCGGCAATGGCGAAGGCAGCGGGGCTGGATTGGCCGCAGGCGGACAGCCTGAACGAAGATACGCTGGAGCAGCGGCTGTTCGGCGCGCAGAAGCCG
GCCAACAGCCCGGGCGGGCGGGTGATGCCGGACTTCCCCTATCTGCATCGCGAGTTGCGCCGCAAGGGCGTGACACTGCAGTTGCTGTGGGAGGAATACC
TGGAGGCGAATCCAAACGTCCCCATTTACCAATACACGCAGTTCTGCTGCCGTTACCGGGACTGGGCAGCGACGCTCAAGCGGTCCATGCGCCAGCAGCA
CCGCGCCGGCGAGAAGCTGTTTGCTGACTTCGCCGGTCAGATGGTGCCGATTCTGGATGCGGAGGGCGGCATTGCCTTCGAAGCCAGCATCTTCGTCGCT
GTGCTCGGCGCTTCAAATTACACGTACGCGTGCGCCACCCGGGGGCAGACCACTGCCGACTGGATCGGGGGAATGGTCTGCGCGATGGAATTCGCCGGCG
GCGTGCCCGAGCTGCTTGTTCCGGACAACCCGCGCGCGCTGGTGGCTCGCCCTGACCGATACGAGCCAGTGCTGTCCCGAACTGCAGAAGACTTCGTTCA
TCACTACGGCACGGCCATGCTGCCAGCACGGCCACGCAAGCCGCAAGACAAGGCCAAGGTCGAGACTGGCGTACTGATCGTCGAGCGGTGGATCCTAGCG
CGGCTGCGCAATCACCGCTTCTACAGCTTGGGCGAGCTCAACAAGGCTATCAAGAAGCTCGTCGCCGACCTGAACGACCGACCGTTCAAGAAGCTGCCTG
GCACGCGCCGGGAGTGGTTCGAGCGGTTGGACCGGCCAGTGCTGCGACCGCTGCCGCCGCGGCGCTACGAAGTTGCAACGTTCAAACAGTGCCGCGTCAA
CGTCGACTACCACGTCGAGATCGACGGCCACTACTACAGCGTGCCGCATGCCCTGGTGCGCAAGGCGGTGGAGGCTCGCGTAACTCGCCACACCATCGAG
ATCCTGTACGGCGGCAAACGGGTGGCGCTGCACGCGCGCAATACCCGCAAGGGCAGCCACAGCACGGTCAAGGAACACATGCCGGTGGCCCACCGCGCGC
ACCTCGAATGGACGCCCGGCCGGCTGCTCAACTGGGCAGCCTCGATTGGGCCCAACGTCGCCGTCATCGTCGAATACCAGCTCACCCACAAGAGCCATCC
CGAGATGGGCTATCGCGCCTGCCTGGGTCTGCTGAGTCTGGCCAAGAAGTACAGCAAGGAGCGGCTCGAAGCCGCTTGCGCCCGCGCCGTCGCCATTGGC
TCGCTCACGCGTAAGTCTGTGGTCTCCATCCTTGAAAACCATCTGGACCGGCAAGCCACTCTGCCGGTATCGCAAACCGAGTGGCATTCCCCCATGCACG
ACAACGTGCGCGGACCCGACTACTACCATTAGGAAAACTATGCTGATGCAACACACCGTCGGCCAGCTCAAGGCCCTGAAGCTCGACGGGATGGCGCGGG
CCTTCGAGGAACAGTCTGCCCTGACCGCCAGCTCCAGCCTGCCGTTCGAAGAACGCTTCTCCATGCTGGTCGACCGGGAGATTGCTTGGCGTGACACCAG
GCGCCTGGAGCGGCTGCTGCGCTCGGCCAAGCTCAAGCACGCCCAGGCATGCCTCGAGGATGTGGTCTATGACGGCAGCCGCGGTCTTGACCAGCGGCTG
GTCGCCAGCCTGGCCAGTTGCGACTGGATCCGCAATGCTCAGAGTCTCATCCTTACCGGGGCGACCGGTGCCGGCAAGTCCTGGCTGGCCTGTGCGTTTG
CTCAGCAGGCCTGTCGGCAGGGATTCTCTGCGCTCTACCTGCGGGTGCCGCGACTGTTCGAGGAACTGCAGATCGCCCACGGCGACGGGAGCTTCACCCG
CCGCCTGGCACAGCTCGCGCGCATCGATGTCCTGGTGCTGGACGACTGGGGCCTACAGGAGCCTTCTAAAAGCGCACGCGGCGATCTGCTGGAAGTTCTG
GACGATCGCGTCGGCACCCGCTCGACCATCGTGACCAGCCAGCTCCCGATCGAGCATTGGCACCAGTGGTTGGATGATCCGACGCTGGCTGACGCCATTC
TGGACCGGCTGGTCCACCAGGCGCACAAGGTATCGCTCAAAGGCGAATCCATGCGCAAGCGCTCGGCTACCGACGTCAAGAAACGGGCATCGTGATCACC
TACGCTACAATCTCCTGACCGCGCAGTACCACCTTCCTTCCCTGATCACGTTCGCCGAAACCGCTGATCACCTTCACCGAAATCCGCA
CGATGCCGCCGAAATCGGTGATCAGCTTCCCGAAACGAGTGATCACGTTGCCGAAATAGGTGATCAAGCAGCCGAAATGGGTGATCACGCACCGCAATGG
GGCCGGGGTTAGGGGTGGGACTGCGCATGGACTAGAACGCCGGCGATACGCTGCTTCCTTTTTCAAGGAAGCAAGCTGATGCCGGCCAACCGGATGACCA
TGCGCAAAATCAAGGAAGTGCTTCGCCTGAAGTGGGCGTGTGGCCTTTCGCACCGGCAGATCGCTAGGGCGACGGGTGTGAGTGTTGGCGCCGTTTCGCA
GTACGCGGCAATGGCGAAGGCAGCGGGGCTGGATTGGCCGCAGGCGGACAGCCTGAACGAAGATACGCTGGAGCAGCGGCTGTTCGGCGCGCAGAAGCCG
GCCAACAGCCCGGGCGGGCGGGTGATGCCGGACTTCCCCTATCTGCATCGCGAGTTGCGCCGCAAGGGCGTGACACTGCAGTTGCTGTGGGAGGAATACC
TGGAGGCGAATCCAAACGTCCCCATTTACCAATACACGCAGTTCTGCTGCCGTTACCGGGACTGGGCAGCGACGCTCAAGCGGTCCATGCGCCAGCAGCA
CCGCGCCGGCGAGAAGCTGTTTGCTGACTTCGCCGGTCAGATGGTGCCGATTCTGGATGCGGAGGGCGGCATTGCCTTCGAAGCCAGCATCTTCGTCGCT
GTGCTCGGCGCTTCAAATTACACGTACGCGTGCGCCACCCGGGGGCAGACCACTGCCGACTGGATCGGGGGAATGGTCTGCGCGATGGAATTCGCCGGCG
GCGTGCCCGAGCTGCTTGTTCCGGACAACCCGCGCGCGCTGGTGGCTCGCCCTGACCGATACGAGCCAGTGCTGTCCCGAACTGCAGAAGACTTCGTTCA
TCACTACGGCACGGCCATGCTGCCAGCACGGCCACGCAAGCCGCAAGACAAGGCCAAGGTCGAGACTGGCGTACTGATCGTCGAGCGGTGGATCCTAGCG
CGGCTGCGCAATCACCGCTTCTACAGCTTGGGCGAGCTCAACAAGGCTATCAAGAAGCTCGTCGCCGACCTGAACGACCGACCGTTCAAGAAGCTGCCTG
GCACGCGCCGGGAGTGGTTCGAGCGGTTGGACCGGCCAGTGCTGCGACCGCTGCCGCCGCGGCGCTACGAAGTTGCAACGTTCAAACAGTGCCGCGTCAA
CGTCGACTACCACGTCGAGATCGACGGCCACTACTACAGCGTGCCGCATGCCCTGGTGCGCAAGGCGGTGGAGGCTCGCGTAACTCGCCACACCATCGAG
ATCCTGTACGGCGGCAAACGGGTGGCGCTGCACGCGCGCAATACCCGCAAGGGCAGCCACAGCACGGTCAAGGAACACATGCCGGTGGCCCACCGCGCGC
ACCTCGAATGGACGCCCGGCCGGCTGCTCAACTGGGCAGCCTCGATTGGGCCCAACGTCGCCGTCATCGTCGAATACCAGCTCACCCACAAGAGCCATCC
CGAGATGGGCTATCGCGCCTGCCTGGGTCTGCTGAGTCTGGCCAAGAAGTACAGCAAGGAGCGGCTCGAAGCCGCTTGCGCCCGCGCCGTCGCCATTGGC
TCGCTCACGCGTAAGTCTGTGGTCTCCATCCTTGAAAACCATCTGGACCGGCAAGCCACTCTGCCGGTATCGCAAACCGAGTGGCATTCCCCCATGCACG
ACAACGTGCGCGGACCCGACTACTACCATTAGGAAAACTATGCTGATGCAACACACCGTCGGCCAGCTCAAGGCCCTGAAGCTCGACGGGATGGCGCGGG
CCTTCGAGGAACAGTCTGCCCTGACCGCCAGCTCCAGCCTGCCGTTCGAAGAACGCTTCTCCATGCTGGTCGACCGGGAGATTGCTTGGCGTGACACCAG
GCGCCTGGAGCGGCTGCTGCGCTCGGCCAAGCTCAAGCACGCCCAGGCATGCCTCGAGGATGTGGTCTATGACGGCAGCCGCGGTCTTGACCAGCGGCTG
GTCGCCAGCCTGGCCAGTTGCGACTGGATCCGCAATGCTCAGAGTCTCATCCTTACCGGGGCGACCGGTGCCGGCAAGTCCTGGCTGGCCTGTGCGTTTG
CTCAGCAGGCCTGTCGGCAGGGATTCTCTGCGCTCTACCTGCGGGTGCCGCGACTGTTCGAGGAACTGCAGATCGCCCACGGCGACGGGAGCTTCACCCG
CCGCCTGGCACAGCTCGCGCGCATCGATGTCCTGGTGCTGGACGACTGGGGCCTACAGGAGCCTTCTAAAAGCGCACGCGGCGATCTGCTGGAAGTTCTG
GACGATCGCGTCGGCACCCGCTCGACCATCGTGACCAGCCAGCTCCCGATCGAGCATTGGCACCAGTGGTTGGATGATCCGACGCTGGCTGACGCCATTC
TGGACCGGCTGGTCCACCAGGCGCACAAGGTATCGCTCAAAGGCGAATCCATGCGCAAGCGCTCGGCTACCGACGTCAAGAAACGGGCATCGTGATCACC
TACGCTACAATCTCCTGACCGCGCAGTACCACCTTCCTTCCCTGATCACGTTCGCCGAAACCGCTGATCACCTTCACCGAAATCCGCA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1554 bp | 517 aa | 279 | 1832 | + | No |
Chemistry : DDE
ORF sequence :
MPANRMTMRKIKEVLRLKWACGLSHRQIARATGVSVGAVSQYAAMAKAAGLDWPQADSLNEDTLEQRLFGAQKPANSPGGRVMPDFPYLHRELRRKGVTL
QLLWEEYLEANPNVPIYQYTQFCCRYRDWAATLKRSMRQQHRAGEKLFADFAGQMVPILDAEGGIAFEASIFVAVLGASNYTYACATRGQTTADWIGGMV
CAMEFAGGVPELLVPDNPRALVARPDRYEPVLSRTAEDFVHHYGTAMLPARPRKPQDKAKVETGVLIVERWILARLRNHRFYSLGELNKAIKKLVADLND
RPFKKLPGTRREWFERLDRPVLRPLPPRRYEVATFKQCRVNVDYHVEIDGHYYSVPHALVRKAVEARVTRHTIEILYGGKRVALHARNTRKGSHSTVKEH
MPVAHRAHLEWTPGRLLNWAASIGPNVAVIVEYQLTHKSHPEMGYRACLGLLSLAKKYSKERLEAACARAVAIGSLTRKSVVSILENHLDRQATLPVSQT
EWHSPMHDNVRGPDYYH
QLLWEEYLEANPNVPIYQYTQFCCRYRDWAATLKRSMRQQHRAGEKLFADFAGQMVPILDAEGGIAFEASIFVAVLGASNYTYACATRGQTTADWIGGMV
CAMEFAGGVPELLVPDNPRALVARPDRYEPVLSRTAEDFVHHYGTAMLPARPRKPQDKAKVETGVLIVERWILARLRNHRFYSLGELNKAIKKLVADLND
RPFKKLPGTRREWFERLDRPVLRPLPPRRYEVATFKQCRVNVDYHVEIDGHYYSVPHALVRKAVEARVTRHTIEILYGGKRVALHARNTRKGSHSTVKEH
MPVAHRAHLEWTPGRLLNWAASIGPNVAVIVEYQLTHKSHPEMGYRACLGLLSLAKKYSKERLEAACARAVAIGSLTRKSVVSILENHLDRQATLPVSQT
EWHSPMHDNVRGPDYYH
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
756 bp | 251 aa | 1840 | 2595 | + | No |
AG : IS21 helper
ORF sequence :
MLMQHTVGQLKALKLDGMARAFEEQSALTASSSLPFEERFSMLVDREIAWRDTRRLERLLRSAKLKHAQACLEDVVYDGSRGLDQRLVASLASCDWIRNA
QSLILTGATGAGKSWLACAFAQQACRQGFSALYLRVPRLFEELQIAHGDGSFTRRLAQLARIDVLVLDDWGLQEPSKSARGDLLEVLDDRVGTRSTIVTS
QLPIEHWHQWLDDPTLADAILDRLVHQAHKVSLKGESMRKRSATDVKKRAS
QSLILTGATGAGKSWLACAFAQQACRQGFSALYLRVPRLFEELQIAHGDGSFTRRLAQLARIDVLVLDDWGLQEPSKSARGDLLEVLDDRVGTRSTIVTS
QLPIEHWHQWLDDPTLADAILDRLVHQAHKVSLKGESMRKRSATDVKKRAS
Blast result :
Comments
ISRme9 is 83%(istA) aa similar to ISBmu3, and 91%(istB) aa similar to IS408.
References
1] Taghavi,S., Provoost,A., Mergeay,M. and van der Lelie,D. (1996) Mol. Gen. Genet. 250 (2), 169-179.