ISDge14
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_009939 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 plasmid pDGEO02 |
DNA section
IS Length : 1152 bp
Ends
IR Length : 20/23
IRL : CTCAGAACTTGCACCTGAATAGGTAGTCAAAAGGCGCTTCCAGACACGAG
IRR : CTCAAGTCTTGCACCTGGATAGGGTGAGTGCATATCCGTGCTGGCGCAGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGGAACGGG | TCGC | GCCCGTTCCCC | 4 |
DNA sequence
CTCAGAACTTGCACCTGAATAGGTAGTCAAAAGGCGCTTCCAGACACGAGAAAGAGGGTGTGTGGAACCTCAAGCTTCGCGGGGAGCGCGCGTCCATTCT
GGCAGATGCGCTCCTGTCTGTCCCCACCAGCCCTTACCAGAAGCGCAGCCTGGAGGCTGCGCTGGGCCTCTTCCTGGACCTGAAGACGAAAACGGCGCTG
CACCGCGCCCATACCGTCAGCGCCAGTGCCCTGAGTCGCCTGCTGAACGTGTATGAATGGGATACGGCGGCCTGCTGGGTGACCCTGGTCCAGGCGCAGT
GGGACGCTCTGCTCCTGGCGGCACGGCGCAACCATCATCCTCGTTTGCGGCTGTGTGTGGACCTGACCAGCGTCCCGAAGACGGGACGCGAGCTGCCCTT
CGTTCGCGTCTATCACGAGGTCTACGGCATTCATCTGGTGGTGCTGTACGCGGTGTACCGGGACTTGAAGTTCCCGGTGGGCTACCGGGTGTACCGGGGG
AAGGGGTCCCCTTCCCCCGTCCGTCTCGCTTTGGAGCTGCTGGCGAGCGTGCCCGCCGAAGTGAGCCGTCGCTTTGACGTCTGGGTGCTGGCGGACAGCG
GGTTCGAGTCAGCCGCGTTCCTTCAGGGCGTGCGGGACCTGGGCTTCGAGTTCGTGGTCGGGGTCCGCTCCACTCGGCGCACCGACCATCCCGGTCGCGT
CACCGTGGAGGACTGCGAACACGGGAGCTGGGTGAATCTCGCCAACTGGCCCTGGGACACCCTGACGCTGGCCCGTGTTGAGCGAGGGGAGCGCACCTTT
TTCTCGGTGGCGTCGCAACTGCTCCCGGGCGACCGTGTCGCCCGGGAGGGAGCACGGCGCTGGGCTATTGAGTCTTTTTTCAAGGAGGCCAAGCATGGCT
TCGGGCTGAACCGGTTTGCGTTGCGAACCGCGCAGGGACTGGACCGCTGGGTGCTGCTGGTTTTCGCCGCCTTCACCTTGGCCATGCTCTGCCGAGCTGA
CACCCTCTCGCTGGAACAAGCGGCGGAAGTTGCGGCTCGGGTGGCGCTGCCCCTGCTGGTCATTCAGCGACTCGCTGTACAAGTCTGGCGAGAGGAAGAA
TTCCTGCGCCAGCACGGATATGCACTCACCCTATCCAGGTGCAAGACTTGAG
GGCAGATGCGCTCCTGTCTGTCCCCACCAGCCCTTACCAGAAGCGCAGCCTGGAGGCTGCGCTGGGCCTCTTCCTGGACCTGAAGACGAAAACGGCGCTG
CACCGCGCCCATACCGTCAGCGCCAGTGCCCTGAGTCGCCTGCTGAACGTGTATGAATGGGATACGGCGGCCTGCTGGGTGACCCTGGTCCAGGCGCAGT
GGGACGCTCTGCTCCTGGCGGCACGGCGCAACCATCATCCTCGTTTGCGGCTGTGTGTGGACCTGACCAGCGTCCCGAAGACGGGACGCGAGCTGCCCTT
CGTTCGCGTCTATCACGAGGTCTACGGCATTCATCTGGTGGTGCTGTACGCGGTGTACCGGGACTTGAAGTTCCCGGTGGGCTACCGGGTGTACCGGGGG
AAGGGGTCCCCTTCCCCCGTCCGTCTCGCTTTGGAGCTGCTGGCGAGCGTGCCCGCCGAAGTGAGCCGTCGCTTTGACGTCTGGGTGCTGGCGGACAGCG
GGTTCGAGTCAGCCGCGTTCCTTCAGGGCGTGCGGGACCTGGGCTTCGAGTTCGTGGTCGGGGTCCGCTCCACTCGGCGCACCGACCATCCCGGTCGCGT
CACCGTGGAGGACTGCGAACACGGGAGCTGGGTGAATCTCGCCAACTGGCCCTGGGACACCCTGACGCTGGCCCGTGTTGAGCGAGGGGAGCGCACCTTT
TTCTCGGTGGCGTCGCAACTGCTCCCGGGCGACCGTGTCGCCCGGGAGGGAGCACGGCGCTGGGCTATTGAGTCTTTTTTCAAGGAGGCCAAGCATGGCT
TCGGGCTGAACCGGTTTGCGTTGCGAACCGCGCAGGGACTGGACCGCTGGGTGCTGCTGGTTTTCGCCGCCTTCACCTTGGCCATGCTCTGCCGAGCTGA
CACCCTCTCGCTGGAACAAGCGGCGGAAGTTGCGGCTCGGGTGGCGCTGCCCCTGCTGGTCATTCAGCGACTCGCTGTACAAGTCTGGCGAGAGGAAGAA
TTCCTGCGCCAGCACGGATATGCACTCACCCTATCCAGGTGCAAGACTTGAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1092 bp | 363 aa | 60 | 1151 | + | No |
Chemistry : DDE
ORF sequence :
MWNLKLRGERASILADALLSVPTSPYQKRSLEAALGLFLDLKTKTALHRAHTVSASALSRLLNVYEWDTAACWVTLVQAQWDALLLAARRNHHPRLRLCV
DLTSVPKTGRELPFVRVYHEVYGIHLVVLYAVYRDLKFPVGYRVYRGKGSPSPVRLALELLASVPAEVSRRFDVWVLADSGFESAAFLQGVRDLGFEFVV
GVRSTRRTDHPGRVTVEDCEHGSWVNLANWPWDTLTLARVERGERTFFSVASQLLPGDRVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLL
VFAAFTLAMLCRADTLSLEQAAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYALTLSRCKT
DLTSVPKTGRELPFVRVYHEVYGIHLVVLYAVYRDLKFPVGYRVYRGKGSPSPVRLALELLASVPAEVSRRFDVWVLADSGFESAAFLQGVRDLGFEFVV
GVRSTRRTDHPGRVTVEDCEHGSWVNLANWPWDTLTLARVERGERTFFSVASQLLPGDRVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLL
VFAAFTLAMLCRADTLSLEQAAEVAARVALPLLVIQRLAVQVWREEEFLRQHGYALTLSRCKT
Blast result :
Comments
ISDge14 is 97% aa similar to ISDge12.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.