ISDge12
- Family IS701
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008010 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 plasmid 1 |
DNA section
IS Length : 1145 bp
Ends
IR Length : 8/13
IRL : CTTGCACCTGAAGAGGTAGCGAGAAGGCGCTCCCAGCCGCGAGAAAGAGG
IRR : CTTAGGTCTTGCACCTGGATAGGGTCAGTGAATAGCCGTGCTGGCGCAGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GCAGCCACTACCA | GAA | AACGGT | 3 |
| TGAGCCGCTCTCATCT | CTTAATGCT | 0 | |
| TCGCAGTCACTCAGAA | ATCTTGGCA | 0 |
DNA sequence
CTTGCACCTGAAGAGGTAGCGAGAAGGCGCTCCCAGCCGCGAGAAAGAGGGTGTGTATGACCTCAAGCTTCGCGGGGAGCGCGCGTCCATTCTGGCAGAC
GCGCTGCTCTCTGTCCCCACCAGCCCTTACCAGAAGCGCAGCCTGGAGGCTGCGCTGGGCCTCTTTCTCGACCTGAAGACGAAAAAAGCGTTGCACTGGG
CACACACGGTCAGTGCCAGTGCGCTGAGTCGCCTGCTGAACGTGGATGAGTGGGACACGTCCGCCTGCTGGGCGACCCTGGTCCAGGCCCAATGGGACGC
CCTGCTCCTCGCGGCACGGCGCAACCATCATCCTCGTTTGCGTCTGTGCGTGGACCTGACCAGCATCCCGAAAACGGGACGCGAGCTGCCCTTCGTTCGC
GTCTATCACGAGGTCTACGGGATTCATCTGGTGGTGCTGTACGCGGTGTACGGGGACCTGAAGTTTCCTGTGGGCTACCGAGTGTACCGGGGGAAGGGGA
CCCCTTCCCCCGTCCGGCTCGCCCTGGAACTGCTGGCCAGCGTGCCCGCCGAGGTGAGCCGCCGCTTCGACGTCTGGGTGTTGGCGGACAGCGGCTTCGA
ATCGTCAGCCTTCCTGCAAGGCGTGCGGGACCTAGGCTTCGAGTTCGTGGTCGGGGTCCGTTCAACTCGCCGCACTGACCATCCCGGTCACGTCACGGTG
GAGGACTGCGAACACGGGAGCTGGGTGAATCTCGCCAACTGGCCCTGGGACACCCTGACGCTGGCCCGGATTCACCGAGGAGAGCGCACCTTTTTCTCGG
TGGCATCACAACTGCTCCCGGGCGACCTCGTCGCCCGGGAGGGAGCACGGCGCTGGGCTATTGAGTCGTTTTTCAAGGAGGCCAAGCATGGCTTCGGGTT
GAATCGGTTCGCGTTGCGAACCGCTCAAGGGCTGGACCGCTGGGTGCTGCTGGTCTTCGCTGCCTTTACCTTGTCCATGCTCTGCCGAACCGATGCCTTG
TCCCTGGAACAGGCAGCGGAAGTTGCGGCTCGGGTGGCTCTGCCACTGCTGGTCGTTCAGCGACTCGCGGTCCAGGTCTGGCGAGAGGAAGAATTCCTGC
GCCAGCACGGCTATTCACTGACCCTATCCAGGTGCAAGACCTAAG
GCGCTGCTCTCTGTCCCCACCAGCCCTTACCAGAAGCGCAGCCTGGAGGCTGCGCTGGGCCTCTTTCTCGACCTGAAGACGAAAAAAGCGTTGCACTGGG
CACACACGGTCAGTGCCAGTGCGCTGAGTCGCCTGCTGAACGTGGATGAGTGGGACACGTCCGCCTGCTGGGCGACCCTGGTCCAGGCCCAATGGGACGC
CCTGCTCCTCGCGGCACGGCGCAACCATCATCCTCGTTTGCGTCTGTGCGTGGACCTGACCAGCATCCCGAAAACGGGACGCGAGCTGCCCTTCGTTCGC
GTCTATCACGAGGTCTACGGGATTCATCTGGTGGTGCTGTACGCGGTGTACGGGGACCTGAAGTTTCCTGTGGGCTACCGAGTGTACCGGGGGAAGGGGA
CCCCTTCCCCCGTCCGGCTCGCCCTGGAACTGCTGGCCAGCGTGCCCGCCGAGGTGAGCCGCCGCTTCGACGTCTGGGTGTTGGCGGACAGCGGCTTCGA
ATCGTCAGCCTTCCTGCAAGGCGTGCGGGACCTAGGCTTCGAGTTCGTGGTCGGGGTCCGTTCAACTCGCCGCACTGACCATCCCGGTCACGTCACGGTG
GAGGACTGCGAACACGGGAGCTGGGTGAATCTCGCCAACTGGCCCTGGGACACCCTGACGCTGGCCCGGATTCACCGAGGAGAGCGCACCTTTTTCTCGG
TGGCATCACAACTGCTCCCGGGCGACCTCGTCGCCCGGGAGGGAGCACGGCGCTGGGCTATTGAGTCGTTTTTCAAGGAGGCCAAGCATGGCTTCGGGTT
GAATCGGTTCGCGTTGCGAACCGCTCAAGGGCTGGACCGCTGGGTGCTGCTGGTCTTCGCTGCCTTTACCTTGTCCATGCTCTGCCGAACCGATGCCTTG
TCCCTGGAACAGGCAGCGGAAGTTGCGGCTCGGGTGGCTCTGCCACTGCTGGTCGTTCAGCGACTCGCGGTCCAGGTCTGGCGAGAGGAAGAATTCCTGC
GCCAGCACGGCTATTCACTGACCCTATCCAGGTGCAAGACCTAAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1092 bp | 363 aa | 53 | 1144 | + | No |
Chemistry : DDE
ORF sequence :
MYDLKLRGERASILADALLSVPTSPYQKRSLEAALGLFLDLKTKKALHWAHTVSASALSRLLNVDEWDTSACWATLVQAQWDALLLAARRNHHPRLRLCV
DLTSIPKTGRELPFVRVYHEVYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALELLASVPAEVSRRFDVWVLADSGFESSAFLQGVRDLGFEFVV
GVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARIHRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLL
VFAAFTLSMLCRTDALSLEQAAEVAARVALPLLVVQRLAVQVWREEEFLRQHGYSLTLSRCKT
DLTSIPKTGRELPFVRVYHEVYGIHLVVLYAVYGDLKFPVGYRVYRGKGTPSPVRLALELLASVPAEVSRRFDVWVLADSGFESSAFLQGVRDLGFEFVV
GVRSTRRTDHPGHVTVEDCEHGSWVNLANWPWDTLTLARIHRGERTFFSVASQLLPGDLVAREGARRWAIESFFKEAKHGFGLNRFALRTAQGLDRWVLL
VFAAFTLSMLCRTDALSLEQAAEVAARVALPLLVVQRLAVQVWREEEFLRQHGYSLTLSRCKT
Blast result :
Comments
ISDge12 is 79% aa similar to ISDge5.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.