ISDge11
- Family IS4
- Group IS10
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008010 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 plasmid 1 Deinococcus geothermalis DSM 11300 plasmid pDGEO02 |
DNA section
IS Length : 1176 bp
Ends
IR Length : 22
IRL : CTCAGTACCTGACAGGTTGAGAGGAATGTCGACCAGGACGCAGAAAAGCA
IRR : CTCAGTACCTGACAGGTTGAGATTTTTGCTGTCCAGGAGCGGGAAAAGGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTCGCGGGGAGA | CCGCCTCAC | GCAAGCCATTGCGACG | 9 |
DNA sequence
CTCAGTACCTGACAGGTTGAGAGGAATGTCGACCAGGACGCAGAAAAGCAGGGCAAAGGGTGGCAAAAGGGTGTGTGATCCAGCCCCGTGCCGCCCTCTC
GCATGTTGACACATTCGCTGCTTACCTCAAGGAAAGGCTTCCCCACCACCGCTTGGACACCCTCCGTCGGCTGACCGAGGTGCTGTTCGGGATTCTTCAG
GCCGAGTCCACCCTGCACCGCAAAATTGCGGCACACATCAACCGCACCGCCTCACCCGCCTCCATCACGCGGATGGTGGCGCGGACCTTCCACGAGACGA
ACCTCACGCCGCAGGACGTCCAAGACGTCCTGCTTCCGCTGCTCCCCCCAGGGAAACTGACTTTAGTGCTGGACCGGACGAACTGGAAGCTCGGCGCCAA
GGACCTCAATCTGCTGGTGCTGGGCGTGGCCCTCGGTGACGTGGTGTTGCCCCTGACCTGGCAGGTGTTGCCGCACGGCGGCAACAGTGACATGCGGGGC
CGGATGCTGCTGGTGGGCCTGCTCCTGAAGCGCCTCCCCGCCCGGCGCTGGGCCGTCCTGATTGCGGACCGGGAGTTCATTGGGCAGGAATGGTTCAACT
TCCTGCGGGACCGCAAGATCAAGCGGTGCATTCGGATTCGGGAAAGCACCCTACTGGACGACGAACCTGCACGGAACGCCTTCCAGAACCTGAAGCCGGG
AGAGGTGCGGGGAGTGTTCGAGCGGGTCTGGGTGTACGGAAGCTGGATGCAGGTGGTCGCGACGCTCGCCCCCCAGGGCGAGCGCGTCCTGGTCGCCTCT
GACCTGTCCCTCTGGGACACCCTGACCACCTACCGGTTGAGATGGGCCATCGAATGCACCTTTTCCGCAATGAAGACGCGGGGCCTGAACCTCGAACAGA
CCCATATGACCCAGCCGAACCGCCTCTCTCGCCTTTTCGGCCTGCTGAGTCTGGCGCTCGCCTGGATGGTTCGGATTGGCGAGTGGCGGGCGGAACAGCA
GCCCATCCCCAGGAAGAAGCACGGTCGCCCGGCCTGGGGCCGGGCGAGATATGGGCATGAACTGCTCAGTGCGGCCTTGCGTTGGGGAAAAATCACGTTC
TACACGTACTTTGACCTGCTCAGGTTCCCTTTTCCCGCTCCTGGACAGCAAAAATCTCAACCTGTCAGGTACTGAG
GCATGTTGACACATTCGCTGCTTACCTCAAGGAAAGGCTTCCCCACCACCGCTTGGACACCCTCCGTCGGCTGACCGAGGTGCTGTTCGGGATTCTTCAG
GCCGAGTCCACCCTGCACCGCAAAATTGCGGCACACATCAACCGCACCGCCTCACCCGCCTCCATCACGCGGATGGTGGCGCGGACCTTCCACGAGACGA
ACCTCACGCCGCAGGACGTCCAAGACGTCCTGCTTCCGCTGCTCCCCCCAGGGAAACTGACTTTAGTGCTGGACCGGACGAACTGGAAGCTCGGCGCCAA
GGACCTCAATCTGCTGGTGCTGGGCGTGGCCCTCGGTGACGTGGTGTTGCCCCTGACCTGGCAGGTGTTGCCGCACGGCGGCAACAGTGACATGCGGGGC
CGGATGCTGCTGGTGGGCCTGCTCCTGAAGCGCCTCCCCGCCCGGCGCTGGGCCGTCCTGATTGCGGACCGGGAGTTCATTGGGCAGGAATGGTTCAACT
TCCTGCGGGACCGCAAGATCAAGCGGTGCATTCGGATTCGGGAAAGCACCCTACTGGACGACGAACCTGCACGGAACGCCTTCCAGAACCTGAAGCCGGG
AGAGGTGCGGGGAGTGTTCGAGCGGGTCTGGGTGTACGGAAGCTGGATGCAGGTGGTCGCGACGCTCGCCCCCCAGGGCGAGCGCGTCCTGGTCGCCTCT
GACCTGTCCCTCTGGGACACCCTGACCACCTACCGGTTGAGATGGGCCATCGAATGCACCTTTTCCGCAATGAAGACGCGGGGCCTGAACCTCGAACAGA
CCCATATGACCCAGCCGAACCGCCTCTCTCGCCTTTTCGGCCTGCTGAGTCTGGCGCTCGCCTGGATGGTTCGGATTGGCGAGTGGCGGGCGGAACAGCA
GCCCATCCCCAGGAAGAAGCACGGTCGCCCGGCCTGGGGCCGGGCGAGATATGGGCATGAACTGCTCAGTGCGGCCTTGCGTTGGGGAAAAATCACGTTC
TACACGTACTTTGACCTGCTCAGGTTCCCTTTTCCCGCTCCTGGACAGCAAAAATCTCAACCTGTCAGGTACTGAG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 996 bp | 331 aa | 180 | 1175 | + | No |
Chemistry : DDE
ORF sequence :
MLFGILQAESTLHRKIAAHINRTASPASITRMVARTFHETNLTPQDVQDVLLPLLPPGKLTLVLDRTNWKLGAKDLNLLVLGVALGDVVLPLTWQVLPHG
GNSDMRGRMLLVGLLLKRLPARRWAVLIADREFIGQEWFNFLRDRKIKRCIRIRESTLLDDEPARNAFQNLKPGEVRGVFERVWVYGSWMQVVATLAPQG
ERVLVASDLSLWDTLTTYRLRWAIECTFSAMKTRGLNLEQTHMTQPNRLSRLFGLLSLALAWMVRIGEWRAEQQPIPRKKHGRPAWGRARYGHELLSAAL
RWGKITFYTYFDLLRFPFPAPGQQKSQPVRY
GNSDMRGRMLLVGLLLKRLPARRWAVLIADREFIGQEWFNFLRDRKIKRCIRIRESTLLDDEPARNAFQNLKPGEVRGVFERVWVYGSWMQVVATLAPQG
ERVLVASDLSLWDTLTTYRLRWAIECTFSAMKTRGLNLEQTHMTQPNRLSRLFGLLSLALAWMVRIGEWRAEQQPIPRKKHGRPAWGRARYGHELLSAAL
RWGKITFYTYFDLLRFPFPAPGQQKSQPVRY
Blast result :
Comments
ISDge11 is 60% aa similar to ISDra1.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.