ISDge7
- Family IS5
- Group IS1031
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008025 | ND | Deinococcus geothermalis | Deinococcus geothermalis DSM 11300 Deinococcus geothermalis DSM 11300 plasmid 1 |
DNA section
IS Length : 876 bp
Ends
IR Length : 21/31
IRL : GAGGCTGGGTCGAAGGCAAACCAAGTTGCGGGGGCTGGCTCTGCTGTCAT
IRR : GAGGCTGGACAAGAGGCTACCCAAGAAGGGGCTTGAGTTTCGCCAGCATC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GATGTGAGCCGGTTTTTT | TA | GGGAGGAGGCCC | 2 |
| CCTGTTCCTGAACACCTC | TA | AGCGCCAATCTT | 2 |
| AGGGCGGACTGACGCTCC | TA | GGTGTTCCCGCA | 2 |
| CGGGCCGCTGTAGCCCGC | TA | GTCCACCTCAAA | 2 |
DNA sequence
GAGGCTGGGTCGAAGGCAAACCAAGTTGCGGGGGCTGGCTCTGCTGTCATCAGAATGGAGGAGTGAATCGGCGTGCCTATCCAAGCGACGTGGATGACGA
GACGTACCACTTCCTACTGCCGTATCTGGCCCTGAGCCCTGAAGACGCGCCACAACGGAAGTACCCGCTTCGGGAAGTGCTAAATGCGTTGCTGTGGATC
AGTCGTACTGGGGCGCAGTGGGAGTATCTGCCCCATGACTTTCCCCCGCCTAAGGTCGTGCGATCTCAGGCCAAACGCTGGTTCGAGGCCCATTGCTTCG
AGAACGCCGTGCATGATCTGCGACTGTTCAGCCGCATTCAGCAGCAACGCGGTCAGGAACCGACCGCGATCATCCTCGACAGTCGTACCCTGCAAAGCAC
ACCTGAGAGCGGTCACCGTGCAGGCTACGACGGCGCTAAGCGGCGCAAGGGCACCAAAGTACACCTGGCCGTCGACACCCTCGGTCACCTGGTCGCGTTG
ATGACGACACCCGCCAACGAACAGGACCGTGCCCAGGTCGAGGCCCTGTGTCTAGCGGCGCAGGAGACCACGGGGGGCATGCTGGAATTGGCCTTTGTGG
ATCAGGGGTACACCGGCGAACAGCCCTTGGAGGCCGCACGCAAGGGGAACATCGAGTTGGTGGTCGTGAAGCGTCCTGACGCTTCACGCGGTTTCGTCCT
GCTGCCTAAACGCTGGGTGGTGGAGCGGTCCTTCGCGTGGTTATCGCGCTTCCGTCGGCTGGGACGAGATTTGGAACGCTTGTCCTCGACCCTCATCGGC
TTCCATTTTGTCGCCGCCTGCGTTCTGATGCTGGCGAAACTCAAGCCCCTTCTTGGGTAGCCTCTTGTCCAGCCTC
GACGTACCACTTCCTACTGCCGTATCTGGCCCTGAGCCCTGAAGACGCGCCACAACGGAAGTACCCGCTTCGGGAAGTGCTAAATGCGTTGCTGTGGATC
AGTCGTACTGGGGCGCAGTGGGAGTATCTGCCCCATGACTTTCCCCCGCCTAAGGTCGTGCGATCTCAGGCCAAACGCTGGTTCGAGGCCCATTGCTTCG
AGAACGCCGTGCATGATCTGCGACTGTTCAGCCGCATTCAGCAGCAACGCGGTCAGGAACCGACCGCGATCATCCTCGACAGTCGTACCCTGCAAAGCAC
ACCTGAGAGCGGTCACCGTGCAGGCTACGACGGCGCTAAGCGGCGCAAGGGCACCAAAGTACACCTGGCCGTCGACACCCTCGGTCACCTGGTCGCGTTG
ATGACGACACCCGCCAACGAACAGGACCGTGCCCAGGTCGAGGCCCTGTGTCTAGCGGCGCAGGAGACCACGGGGGGCATGCTGGAATTGGCCTTTGTGG
ATCAGGGGTACACCGGCGAACAGCCCTTGGAGGCCGCACGCAAGGGGAACATCGAGTTGGTGGTCGTGAAGCGTCCTGACGCTTCACGCGGTTTCGTCCT
GCTGCCTAAACGCTGGGTGGTGGAGCGGTCCTTCGCGTGGTTATCGCGCTTCCGTCGGCTGGGACGAGATTTGGAACGCTTGTCCTCGACCCTCATCGGC
TTCCATTTTGTCGCCGCCTGCGTTCTGATGCTGGCGAAACTCAAGCCCCTTCTTGGGTAGCCTCTTGTCCAGCCTC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 798 bp | 265 aa | 63 | 860 | + | No |
Chemistry : DDE
ORF sequence :
MNRRAYPSDVDDETYHFLLPYLALSPEDAPQRKYPLREVLNALLWISRTGAQWEYLPHDFPPPKVVRSQAKRWFEAHCFENAVHDLRLFSRIQQQRGQEP
TAIILDSRTLQSTPESGHRAGYDGAKRRKGTKVHLAVDTLGHLVALMTTPANEQDRAQVEALCLAAQETTGGMLELAFVDQGYTGEQPLEAARKGNIELV
VVKRPDASRGFVLLPKRWVVERSFAWLSRFRRLGRDLERLSSTLIGFHFVAACVLMLAKLKPLLG
TAIILDSRTLQSTPESGHRAGYDGAKRRKGTKVHLAVDTLGHLVALMTTPANEQDRAQVEALCLAAQETTGGMLELAFVDQGYTGEQPLEAARKGNIELV
VVKRPDASRGFVLLPKRWVVERSFAWLSRFRRLGRDLERLSSTLIGFHFVAACVLMLAKLKPLLG
Blast result :
Comments
ISDge7 is 74% aa similar to ISDra5.
References
1] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Detter,J.C., Glavina del Rio,T., Hammon,N., Israni,S., Dalin,E., Tice,H., Pitluck,S., Brettin,T., Bruce,D., Han,C., Tapia,R., Saunders,E., Gilna,P., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Kim,E., Daly,M.J., Fredrickson,J.K., Makarova,K.S., Gaidamakova,E.K., Zhai,M. and Richardson,P. US DOE Joint Genome Institute. (2006) Direct submission GenBank.