ISPg7
- Family IS5
- Group IS5
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_002950 | ND | Porphyromonas gingivalis | Porphyromonas gingivalis W83 |
DNA section
IS Length : 1428 bp
Ends
IR Length : 19/22
IRL : GTCGTCCCTTAAGAATCCTTTTACTCTCTGATATTGAGCAAATTAGTTTG
IRR : GTCGTCCCTTAAAAAACCTCTTTAAGCGAGAAACCATTGGCAAATGGCAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TGTGTAAGAC | TATGTA | AGATACACCG | 6 |
DNA sequence
GTCGTCCCTTAAGAATCCTTTTACTCTCTGATATTGAGCAAATTAGTTTGCGAAAACCTATGATGAATCTGCAAGTTTTCTTATCTTTATGGCAAGAAAC
TTGCAGATTTTCATGATTAAAAAGCCCCATCATACCCCTTCATTATTCAGCAGTCTATCAGACATGCTGAACCAATCGCACCCACTCTACAAATTGGCCG
ACAAAATAGATTGGGAGAAATTCGATACGGCTTTCCGGCCTTTGTACTGTCAGCACAATGGTCGCCCGAGTAAGCCGATTCGTTTGATGTGTGGCTTGTT
GATTCTCAAGCATCTTCGTAATCTCTCGGATGAATCTGTTGTAGAGCAATGGAGTGAAAATGCTTATTACCAATACTTTTGTGGTATGCAAGAGTTTGCA
CCCGGTGCTCCCTGTGCCTCTTCCGAATTGGTGCATTTTCGCCATCGCATTGGAGAAAAGGGGATAGAACTCATTTTTCAGGAAAGCATTCGTGTCAATA
ACGAAGATGATGATGAGCACCATCATGACACAGCCTTTATCGATTCGACCGTTCAGGAAAAGAATATCACCTTCCCTACCGATGCCAAGTTGCATAAAAA
GATCGTGCGCAAGATTTTGGACATCGTCCATAAGTTGAATCTTCCTCTTCGCCAAAGCTATACCTTTGTTTTGAAGCGGATTTATCGCGACCAACGCTTT
CGCCATCATCCCAAGAATCGCAAGAAGGCGCTGAAGGCAGACAATAAATTGCGAACAATAGCCGGACGATTGGTTCGAGAGCTCAAGCGTAATCTTGGAG
ATAATTCTCTCTACGCCGAATTGATTGAGAGGTTTGAAGCCATTCTTTCACAAAGACGTAACAGCCCCCAAAAGATTTATTCCATTCATGAGCCGGAGGT
TCAATGCATCAGCAAAGGCAAAGAGCACAAGAAGTACGAATTCGGCAATAAGGTATCCGTCATACGCTCGGCTACGGGTATTATCCTTGAAGCCCGATCT
TTTCGAAATGAGTATGACGGGCACACGATAGAAGCTTCGCCGGAACAAGTTGAACGACTCACACACAGAAAGATCAAAATACCGGCCGGGGACAGAGGTT
ATCGAGGCCGGAAAGAAGTTAACGGAACCCGGATTTTAATACCGGATACACCCAAGCAATCAGACAGCAGACATCAGAGGTGCAAGAAACACAAATTATT
CTGCAAGCGAGCAGGCATAGAACCCACCATCGGACACTTGAAATCAGATCATCGTTTAGGCTGCAACTTTTACAAAGGATTGGCCGGGGATGCTATAAAC
ATACTGTTGGCTGCAGCTGCTTATAACTTCAAAAGAGCCATGAAAGCTCTTTGGGACTTTATCAAAATAATAAGCCAGATGCCATTTGCCAATGGTTTCT
CGCTTAAAGAGGTTTTTTAAGGGACGAC
TTGCAGATTTTCATGATTAAAAAGCCCCATCATACCCCTTCATTATTCAGCAGTCTATCAGACATGCTGAACCAATCGCACCCACTCTACAAATTGGCCG
ACAAAATAGATTGGGAGAAATTCGATACGGCTTTCCGGCCTTTGTACTGTCAGCACAATGGTCGCCCGAGTAAGCCGATTCGTTTGATGTGTGGCTTGTT
GATTCTCAAGCATCTTCGTAATCTCTCGGATGAATCTGTTGTAGAGCAATGGAGTGAAAATGCTTATTACCAATACTTTTGTGGTATGCAAGAGTTTGCA
CCCGGTGCTCCCTGTGCCTCTTCCGAATTGGTGCATTTTCGCCATCGCATTGGAGAAAAGGGGATAGAACTCATTTTTCAGGAAAGCATTCGTGTCAATA
ACGAAGATGATGATGAGCACCATCATGACACAGCCTTTATCGATTCGACCGTTCAGGAAAAGAATATCACCTTCCCTACCGATGCCAAGTTGCATAAAAA
GATCGTGCGCAAGATTTTGGACATCGTCCATAAGTTGAATCTTCCTCTTCGCCAAAGCTATACCTTTGTTTTGAAGCGGATTTATCGCGACCAACGCTTT
CGCCATCATCCCAAGAATCGCAAGAAGGCGCTGAAGGCAGACAATAAATTGCGAACAATAGCCGGACGATTGGTTCGAGAGCTCAAGCGTAATCTTGGAG
ATAATTCTCTCTACGCCGAATTGATTGAGAGGTTTGAAGCCATTCTTTCACAAAGACGTAACAGCCCCCAAAAGATTTATTCCATTCATGAGCCGGAGGT
TCAATGCATCAGCAAAGGCAAAGAGCACAAGAAGTACGAATTCGGCAATAAGGTATCCGTCATACGCTCGGCTACGGGTATTATCCTTGAAGCCCGATCT
TTTCGAAATGAGTATGACGGGCACACGATAGAAGCTTCGCCGGAACAAGTTGAACGACTCACACACAGAAAGATCAAAATACCGGCCGGGGACAGAGGTT
ATCGAGGCCGGAAAGAAGTTAACGGAACCCGGATTTTAATACCGGATACACCCAAGCAATCAGACAGCAGACATCAGAGGTGCAAGAAACACAAATTATT
CTGCAAGCGAGCAGGCATAGAACCCACCATCGGACACTTGAAATCAGATCATCGTTTAGGCTGCAACTTTTACAAAGGATTGGCCGGGGATGCTATAAAC
ATACTGTTGGCTGCAGCTGCTTATAACTTCAAAAGAGCCATGAAAGCTCTTTGGGACTTTATCAAAATAATAAGCCAGATGCCATTTGCCAATGGTTTCT
CGCTTAAAGAGGTTTTTTAAGGGACGAC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1308 bp | 435 aa | 113 | 1420 | + | No |
Chemistry : DDE
ORF sequence :
MIKKPHHTPSLFSSLSDMLNQSHPLYKLADKIDWEKFDTAFRPLYCQHNGRPSKPIRLMCGLLILKHLRNLSDESVVEQWSENAYYQYFCGMQEFAPGAP
CASSELVHFRHRIGEKGIELIFQESIRVNNEDDDEHHHDTAFIDSTVQEKNITFPTDAKLHKKIVRKILDIVHKLNLPLRQSYTFVLKRIYRDQRFRHHP
KNRKKALKADNKLRTIAGRLVRELKRNLGDNSLYAELIERFEAILSQRRNSPQKIYSIHEPEVQCISKGKEHKKYEFGNKVSVIRSATGIILEARSFRNE
YDGHTIEASPEQVERLTHRKIKIPAGDRGYRGRKEVNGTRILIPDTPKQSDSRHQRCKKHKLFCKRAGIEPTIGHLKSDHRLGCNFYKGLAGDAINILLA
AAAYNFKRAMKALWDFIKIISQMPFANGFSLKEVF
CASSELVHFRHRIGEKGIELIFQESIRVNNEDDDEHHHDTAFIDSTVQEKNITFPTDAKLHKKIVRKILDIVHKLNLPLRQSYTFVLKRIYRDQRFRHHP
KNRKKALKADNKLRTIAGRLVRELKRNLGDNSLYAELIERFEAILSQRRNSPQKIYSIHEPEVQCISKGKEHKKYEFGNKVSVIRSATGIILEARSFRNE
YDGHTIEASPEQVERLTHRKIKIPAGDRGYRGRKEVNGTRILIPDTPKQSDSRHQRCKKHKLFCKRAGIEPTIGHLKSDHRLGCNFYKGLAGDAINILLA
AAAYNFKRAMKALWDFIKIISQMPFANGFSLKEVF
Blast result :
Comments
ISPg7 is 58% aa similar to ISGme3.
References
1] Nelson,K., Fleishmann,R., DeBoy,R., Paulsen,I., Fouts,D., Eisen,J., Daugherty,S., Dodson,R., Durkin,A., Gwinn,M., Haft,D., Kolonay,J., Nelson,W., White,O., Mason,T., Tallon,L., Gray,J., Granger,D., Tettelin,H., Dong,H., Galvin,J., Duncan,M., Dewhirst,F. and Fraser,C. (2003) J. Bacteriol. 185 (18), 5591-5601.