ISPg6
- Family ISAs1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_002950 | ND | Porphyromonas gingivalis | Porphyromonas gingivalis W83 |
DNA section
IS Length : 1139 bp
Ends
IR Length : 18
IRL : CAGGGCAACCGCATCAAAATAGAGCTATCTTCGGGTTATGGATGTACAAG
IRR : CAGGGCAACCGCATCAAATCTTTAGTAGCTTTTTGAGATAGTCTATATTC
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGACAGAGGG | ATTAGTTTGC | 0 |
DNA sequence
CAGGGCAACCGCATCAAAATAGAGCTATCTTCGGGTTATGGATGTACAAGTTTATTTTTCTAAGGTAGAAGATCCACGTGTAGTGGGTCGTTGCAAGCAT
AAGTTAAGCGATATTCTAGTTATAGCACTGGCGAGTTATCTGTGTGGAGGCGAGGATTATGAGTCCATGCATGAACTTTGCTTAGAGCGAGGAGCATCTC
TTCGCCCACCGGTTGAGTTGCCGAATGGTTGTCCGAGCGTAGACACCTTCGAAAGAGTGCTCCAACGTATTGAGCCTCAGTCTCTCTATGCTTGTCTTCA
AGTTTATGGGAAAGAACTCATTAGCGACTTGGAAGGTAAACATATCGCCATTGACGGCAAACGTCTGAAAGGATCGAAGAAGAAAACCGGCAGTACACAT
ATTCTCTCAGCTTGGGTTGATGAAGTGAGTTTAAGCCTTGCTCAAGAGACTGTTGCCGAGAAACGCAATGAGTTACAAGCCATTCCGGAAGTTTTGGATA
GCCTTGATTTGTCGGGAGCAGTCATCAGCATAAATGCTATGGGGACTCAAACCAACATTGCCGAGCAGATCATCCAATCAGAAGCCGACTACATTCTAAG
TCTCAAAAGCAATCAAAAACACTTGTATGAGGATGTTCAGGATTACTTCACAGGACAATACAGGTGTCATCGTTATGAAACCTTGGAGAAAGATCATGGT
CGTATTGAGAAGAGGACTTATACCACATTACTAGCTTCAGAGGTCTTTGAGGAGGGGGAATATAGTCAATGGCAAGGCTTGAGAAGTTTAATTCAAGTGG
AGCGTGAGATTAGTAGTTTAGAGGGAGAGACTCGCATAGATAGGCAGTATTATATCAGCAGTTTACCACCCGAGGATTGTCAGTTAATCGGACAATATAT
TCGAGGGCATTGGGGAATTGAGAATCGACTCCATTGGCATTTGGATGTAACCTTTAGGGAGGATACTTGTCGAGCTCGTAAGGATTATTCAGCCACCAAT
CTAAACACGTTGAGAAAGTTTGCTTTAGCCATTGTATCCGGGCATAAAGACAAACTATCCTTACGGAAGAGGTTGTTCAAAGCTGCTCTGAATATAGACT
ATCTCAAAAAGCTACTAAAGATTTGATGCGGTTGCCCTG
AAGTTAAGCGATATTCTAGTTATAGCACTGGCGAGTTATCTGTGTGGAGGCGAGGATTATGAGTCCATGCATGAACTTTGCTTAGAGCGAGGAGCATCTC
TTCGCCCACCGGTTGAGTTGCCGAATGGTTGTCCGAGCGTAGACACCTTCGAAAGAGTGCTCCAACGTATTGAGCCTCAGTCTCTCTATGCTTGTCTTCA
AGTTTATGGGAAAGAACTCATTAGCGACTTGGAAGGTAAACATATCGCCATTGACGGCAAACGTCTGAAAGGATCGAAGAAGAAAACCGGCAGTACACAT
ATTCTCTCAGCTTGGGTTGATGAAGTGAGTTTAAGCCTTGCTCAAGAGACTGTTGCCGAGAAACGCAATGAGTTACAAGCCATTCCGGAAGTTTTGGATA
GCCTTGATTTGTCGGGAGCAGTCATCAGCATAAATGCTATGGGGACTCAAACCAACATTGCCGAGCAGATCATCCAATCAGAAGCCGACTACATTCTAAG
TCTCAAAAGCAATCAAAAACACTTGTATGAGGATGTTCAGGATTACTTCACAGGACAATACAGGTGTCATCGTTATGAAACCTTGGAGAAAGATCATGGT
CGTATTGAGAAGAGGACTTATACCACATTACTAGCTTCAGAGGTCTTTGAGGAGGGGGAATATAGTCAATGGCAAGGCTTGAGAAGTTTAATTCAAGTGG
AGCGTGAGATTAGTAGTTTAGAGGGAGAGACTCGCATAGATAGGCAGTATTATATCAGCAGTTTACCACCCGAGGATTGTCAGTTAATCGGACAATATAT
TCGAGGGCATTGGGGAATTGAGAATCGACTCCATTGGCATTTGGATGTAACCTTTAGGGAGGATACTTGTCGAGCTCGTAAGGATTATTCAGCCACCAAT
CTAAACACGTTGAGAAAGTTTGCTTTAGCCATTGTATCCGGGCATAAAGACAAACTATCCTTACGGAAGAGGTTGTTCAAAGCTGCTCTGAATATAGACT
ATCTCAAAAAGCTACTAAAGATTTGATGCGGTTGCCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1089 bp | 362 aa | 38 | 1126 | + | No |
Chemistry : Unknow
ORF sequence :
MDVQVYFSKVEDPRVVGRCKHKLSDILVIALASYLCGGEDYESMHELCLERGASLRPPVELPNGCPSVDTFERVLQRIEPQSLYACLQVYGKELISDLEG
KHIAIDGKRLKGSKKKTGSTHILSAWVDEVSLSLAQETVAEKRNELQAIPEVLDSLDLSGAVISINAMGTQTNIAEQIIQSEADYILSLKSNQKHLYEDV
QDYFTGQYRCHRYETLEKDHGRIEKRTYTTLLASEVFEEGEYSQWQGLRSLIQVEREISSLEGETRIDRQYYISSLPPEDCQLIGQYIRGHWGIENRLHW
HLDVTFREDTCRARKDYSATNLNTLRKFALAIVSGHKDKLSLRKRLFKAALNIDYLKKLLKI
KHIAIDGKRLKGSKKKTGSTHILSAWVDEVSLSLAQETVAEKRNELQAIPEVLDSLDLSGAVISINAMGTQTNIAEQIIQSEADYILSLKSNQKHLYEDV
QDYFTGQYRCHRYETLEKDHGRIEKRTYTTLLASEVFEEGEYSQWQGLRSLIQVEREISSLEGETRIDRQYYISSLPPEDCQLIGQYIRGHWGIENRLHW
HLDVTFREDTCRARKDYSATNLNTLRKFALAIVSGHKDKLSLRKRLFKAALNIDYLKKLLKI
Blast result :
Comments
ISPg6 is 61% aa similar to ISCysp2.
References
1]Nelson,K., Fleishmann,R., DeBoy,R., Paulsen,I., Fouts,D., Eisen,J., Daugherty,S., Dodson,R., Durkin,A., Gwinn,M., Haft,D., Kolonay,J., Nelson,W., White,O., Mason,T., Tallon,L., Gray,J., Granger,D., Tettelin,H., Dong,H., Galvin,J., Duncan,M., Dewhirst,F. and Fraser,C. (2003)J. Bacteriol. 185 (18), 5591-5601.