ISDra8
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_000959 | ND | Deinococcus radiodurans | Deinococcus radiodurans R1 plasmid CP1 |
DNA section
IS Length : 1452 bp
Ends
IR Length : 19/24
IRL : GTAACTGCTCAGCAGGGGGACTTGCGAAGCGGAAACGGGTAGAGTAGGGG
IRR : GTAACTGCTCAGCACGAGAAGTCGAGTTTGGGTAAGACGCCACGAAAAAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TTCTATCGGATA | TACATTTG | AGCCGTAGAGG | 8 |
DNA sequence
GTAACTGCTCAGCAGGGGGACTTGCGAAGCGGAAACGGGTAGAGTAGGGGCATCACGCAAGAGACCTGTCCCAACTGCGAACGACTTGCTGCCGAGGTGA
CTCGCCTCCAGGCTGAAGTCGCCGCATTGCAAGCCGAGCTGCGGGCTATTCAAGCCCTTCTTGGTCTGGATAGCCGCAACTCCAATCAACCGCCGAGCAA
AGACCCACCCTGGAAACCCAAAAGCGAGGCCAGAAGAGCGTACGCTCTTCTGGTGGACAGCTAGGACACCCAGGGAAAACACTGAAATTCAGTGACCAGC
CCGACGAAATTCAAACCCTTCCGCTCACGGGAACGTGTCCTTGTGGAACGAGCTGGGAAGAGGTGGAGGTCGCGAACTGCTTTGCCAGGCAGGTTCACGA
CCTGCCAGAAATCCGCCTTCACATCACCGAGTATCAGGCCGAAGTGAAACGCTGTCCGAACTGCGGCTGTCGTGGACAGGCCGCTTTTCCCGAGCATGTC
CCTGGTCAGGTGCAGTACGGCCCGCGACTCCATGCCTTCACGACCTTGCTGAACGTGGGGCATTTCATCCCATTGGAACGGGTCACTCAGCTGACGGACG
CGCTCTTCGGCGCGTCCATCAGCGATGGTACGGTGGCGCTCAACATCAACCTGGCCTCAGAACGCCTTGAGCCTTTCGAGGACGACCTGAAAACTGGCTT
GAGGCAACAAGCTGTACTTCATGCGGATGAAACAGGCGCAAAGGTGAATGGGAAGTTGAACTGGTTTCACGTGGCCTGTTTTGCGAGGGGAACGCTCTAT
ACCTTGCACGAGAAGCGCGGCTACGCGGCTCTTGAAGCGGCTGGCGTGTTGACCGACTTTACGGCGTCGTGGTTCACGACGCCTGGAGTACCTATTTCCG
TCTTCCTGGAGAACATGCACTGTGCAATGCTCACCTGCTGCGCGAACTGCGCAAACTGGATGAGCATGACCGGCAACCCTGGGCCGGTGAACTGCGGCGG
GCGTTGCAGCAGGTCTACCATGCCCAGAAGACCGGGACACTGACGGATGAGCAAAGAGCTGTGTTCTATACGCGATTTGACGAACTGGTGCTGGCTGGCC
TGGAAGCAAATCCAGTACAGGAACCTGTTCCAAAGCGGCGAGGGAAGCCCAAACAGCTTCCGGGGCGCAACCTGGCCTTGCGGTGTCAGCAGCACCGCGC
AGCGATGCTGCTTTTCCTGGAGCGTGCTGACGTGCCGTTTGACAACAATCAGGCGGAACGTGACATCAGGATGGCCTGTGTAAAACGCAAGGTTTCGGGT
GGGTTTCGCTCGGAGGTCGGAGGTCAGGCGTTCTGCCGGGTTCGCAGCTTCATTTCTACCCTTCAGAAGCAGGGCCTATCAGTTTGGACGGGCTTGGTTG
ACGTTTTTCGTGGCGTCTTACCCAAACTCGACTTCTCGTGCTGAGCAGTTAC
CTCGCCTCCAGGCTGAAGTCGCCGCATTGCAAGCCGAGCTGCGGGCTATTCAAGCCCTTCTTGGTCTGGATAGCCGCAACTCCAATCAACCGCCGAGCAA
AGACCCACCCTGGAAACCCAAAAGCGAGGCCAGAAGAGCGTACGCTCTTCTGGTGGACAGCTAGGACACCCAGGGAAAACACTGAAATTCAGTGACCAGC
CCGACGAAATTCAAACCCTTCCGCTCACGGGAACGTGTCCTTGTGGAACGAGCTGGGAAGAGGTGGAGGTCGCGAACTGCTTTGCCAGGCAGGTTCACGA
CCTGCCAGAAATCCGCCTTCACATCACCGAGTATCAGGCCGAAGTGAAACGCTGTCCGAACTGCGGCTGTCGTGGACAGGCCGCTTTTCCCGAGCATGTC
CCTGGTCAGGTGCAGTACGGCCCGCGACTCCATGCCTTCACGACCTTGCTGAACGTGGGGCATTTCATCCCATTGGAACGGGTCACTCAGCTGACGGACG
CGCTCTTCGGCGCGTCCATCAGCGATGGTACGGTGGCGCTCAACATCAACCTGGCCTCAGAACGCCTTGAGCCTTTCGAGGACGACCTGAAAACTGGCTT
GAGGCAACAAGCTGTACTTCATGCGGATGAAACAGGCGCAAAGGTGAATGGGAAGTTGAACTGGTTTCACGTGGCCTGTTTTGCGAGGGGAACGCTCTAT
ACCTTGCACGAGAAGCGCGGCTACGCGGCTCTTGAAGCGGCTGGCGTGTTGACCGACTTTACGGCGTCGTGGTTCACGACGCCTGGAGTACCTATTTCCG
TCTTCCTGGAGAACATGCACTGTGCAATGCTCACCTGCTGCGCGAACTGCGCAAACTGGATGAGCATGACCGGCAACCCTGGGCCGGTGAACTGCGGCGG
GCGTTGCAGCAGGTCTACCATGCCCAGAAGACCGGGACACTGACGGATGAGCAAAGAGCTGTGTTCTATACGCGATTTGACGAACTGGTGCTGGCTGGCC
TGGAAGCAAATCCAGTACAGGAACCTGTTCCAAAGCGGCGAGGGAAGCCCAAACAGCTTCCGGGGCGCAACCTGGCCTTGCGGTGTCAGCAGCACCGCGC
AGCGATGCTGCTTTTCCTGGAGCGTGCTGACGTGCCGTTTGACAACAATCAGGCGGAACGTGACATCAGGATGGCCTGTGTAAAACGCAAGGTTTCGGGT
GGGTTTCGCTCGGAGGTCGGAGGTCAGGCGTTCTGCCGGGTTCGCAGCTTCATTTCTACCCTTCAGAAGCAGGGCCTATCAGTTTGGACGGGCTTGGTTG
ACGTTTTTCGTGGCGTCTTACCCAAACTCGACTTCTCGTGCTGAGCAGTTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1344 bp | 448 aa | 103 | 1446 | + | No |
Chemistry : DDE
ORF sequence :
MRLQAEVAALQAELRAIQALLGLDSRNSNQPPSKDPPWKPKSEXQKSVRSSGGQLGHPGKTLKFSDQPDEIQTLPLTGTCPCGTSWEEVEVANCFARQVH
DLPEIRLHITEYQAEVKRCPNCGCRGQAAFPEHVPGQVQYGPRLHAFTTLLNVGHFIPLERVTQLTDALFGASISDGTVALNINLASERLEPFEDDLKTG
LRQQAVLHADETGAKVNGKLNWFHVACFARGTLYTLHEKRGYAALEAAGVLTDFTGVVVHDAWSTYFRLPGEHALCNAHLLRELRKLDEHDRQPWAGELR
RALQQVYHAQKTGTLTDEQRAVFYTRFDELVLAGLEANPVQEPVPKRRGKPKQLPGRNLALRCQQHRAAMLLFLERADVPFDNNQAERDIRMACVKRKVS
GGFRSEVGGQAFCRVRSFISTLQKQGLSVWTGLVDVFRGVLPKLDFSC
DLPEIRLHITEYQAEVKRCPNCGCRGQAAFPEHVPGQVQYGPRLHAFTTLLNVGHFIPLERVTQLTDALFGASISDGTVALNINLASERLEPFEDDLKTG
LRQQAVLHADETGAKVNGKLNWFHVACFARGTLYTLHEKRGYAALEAAGVLTDFTGVVVHDAWSTYFRLPGEHALCNAHLLRELRKLDEHDRQPWAGELR
RALQQVYHAQKTGTLTDEQRAVFYTRFDELVLAGLEANPVQEPVPKRRGKPKQLPGRNLALRCQQHRAAMLLFLERADVPFDNNQAERDIRMACVKRKVS
GGFRSEVGGQAFCRVRSFISTLQKQGLSVWTGLVDVFRGVLPKLDFSC
Blast result :
Comments
ISDra8 is 92% aa similar to ISDge4. The transposase was reconstructed in silico by deletion of ISDra1 and of one DR generated by the insertion of ISDra1 into ISDra8.
References
1] White,O., Eisen,J.A., Heidelberg,J.F., Hickey,E.K., Peterson,J.D., Dodson,R.J., Haft,D.H., Gwinn,M.L., Nelson,W.C., Richardson,D.L., Moffat,K.S., Qin,H., Jiang,L., Pamphile,W., Crosby,M., Shen,M., Vamathevan,J.J., Lam,P., McDonald,L., Utterback,T., Zalewski,C., Makarova,K.S., Aravind,L., Daly,M.J., Minton,K.W., Fleischmann,R.D., Ketchum,K.A., Nelson,K.E., Salzberg,S., Smith,H.O., Venter,J.C. and Fraser,C.M.(1999)Science 286 (5444), 1571-1577