ISMsm6

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1765 bp

Ends


IR Length : 18/19

IRL : CCTGAGTTTGGACATGTCGGCCGGTTTTGGGGGCCGGTAGTCGTTTGACC
IRR : CCTGAGTTTGGACATTTCGCTTAGTACCCAGGGTTGAAGCCGAGGTTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GATCCACACGAGCCCAGTGC0

DNA sequence

CCTGAGTTTGGACATGTCGGCCGGTTTTGGGGGCCGGTAGTCGTTTGACCTGCGGTGTTGCGCTGGCGGGTGGGTGTTTTGGGGTACTAACAGGGTAGGT
TCGTGCGGTGGCGTACGTGCGGAAAGTGCGCACTGCCTCGGGCGCGGTGGCGGTGCAGGTCGCCCGCAAAGACGCGGGCAAGGTGGTGATCCTGGCCCAT
CTCGGATCAGCTCATACCGATGCTGAGCTGGGCATTCTGCTCGAGCAAGCGAAGGCGATGGTCATCGGCGGCCAGGTCGCACTGGATTTCGAGGTGGCCG
CTCGGGCTCAATCGATGGCCGATGTCGCTGATTTCCGTGAACAGCGGGTGCTCGGCGAAAAGTCTGGGCCCTCGGCTGCAGCGCCGGTGGTGCCGCCAGG
GCGCACGGTCGGGGCCAGCTCGCGGCTGCTCTATGACCTACTCGGCCACGTCTATGACTGGCATGGTTTCGATACCGTCGGCGACGCAGTGTTCCGCGAT
CTGGTAATCGCCCGGATCGTGGAGCCGACCAGCAAGCTCGACGCGTCGCGGGTGTTGGCTGATCTGGGCGCCCAGCTGGTGTCCTACAAAACCATCGACC
GCCATGTCCGCACGATCCACGCCCGCGGGCACCGCGACGTGATCGCCGAGAAATGCTTCGCCTACGCCACCGACTGCGGCGGGCTGTCACTGATCTTGTA
TGACGTGACCACCCTGTATTTCGCCGCCGAATCCGAGGATTCGCTGCGCAAGGTTGGCTACTCCAAGGAACGTCGGGTCGATCCTCAAATTGTTGTCGGC
CTGTTGGTGGACCGCACCGGATTCCCGTTGGAGATCGGCTGTTTCGAAGGCAACACCGCCGAGACCACCACCATCGTGCCAATCATCACCAGCTTCCTGG
AACGTCACAACCTGGTCGGCACGCCGATGGTCGTGGCTGCCGATGCCGGCATGCTGTCCCAAACCAACCTGACCGCCCTCGATGAGCAGGAGTTGTCGTT
CATCGTGGGCTCTCGGATGACGAAGGCTCCCGGGGATCTGGAATCCCACTTCCATTGGAACGGTGACGTTTTCACCGACGGACAGATCATCGACACCGTC
ACGCCCCGACACGGCAACACCCGCGTCAACGACATCAAGAAGCGTGCCGAACCGGTCTGGGATCCCGAACGCGACACCGGGGCGTGGCGGGCCATCTGGT
CGTACTCGGCCAAACGCGCCCGCCGTGATCAAAAGACCCTGGCCGCTCAAGAAGCCCGGGCCCGGGCCATCGTGGCCGGCGAGAAGAAAGCCAAGACAGC
ACGATTCGTCAAAACCCACGGTGCTGACCGTGCCCTTGACCAAGCCAGCCTCGCCCGCGCCCAATCACTGGTCGGCCTCAAGGGCTACGTGACCAACATC
CCGGTCACTGTCATGCCAGCCGCCGAGGTCATCGCGAAATACCACGACCTGTGGCACGTGGAGAAATCGTTTCGGATGTCCAAATCCGACCTCGATGCCC
GGCCTATGTTCAACCGGATCCGCGATGCCATCGAGGCCCACCTGACCATCGTGTTCGCCGCCCTGGCCGTCTCTCATACCATCCAGTCGCGCACCGGACT
GTCCATCGCCAAGGTCATCAAGCTCCTGCGTCCCCTGCGCTCGGCGACCATCACCATCAACGGCGCCACCCAAACCTTCCCCCCGGCAATCCCCGACACC
GAGAGACAGATCCTCACCAACCTCGGCTTCAACCCTGGGTACTAAGCGAAATGTCCAAACTCAGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1638 bp545 aa1081745+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAYVRKVRTASGAVAVQVARKDAGKVVILAHLGSAHTDAELGILLEQAKAMVIGGQVALDFEVAARAQSMADVADFREQRVLGEKSGPSAAAPVVPPGRT
VGASSRLLYDLLGHVYDWHGFDTVGDAVFRDLVIARIVEPTSKLDASRVLADLGAQLVSYKTIDRHVRTIHARGHRDVIAEKCFAYATDCGGLSLILYDV
TTLYFAAESEDSLRKVGYSKERRVDPQIVVGLLVDRTGFPLEIGCFEGNTAETTTIVPIITSFLERHNLVGTPMVVAADAGMLSQTNLTALDEQELSFIV
GSRMTKAPGDLESHFHWNGDVFTDGQIIDTVTPRHGNTRVNDIKKRAEPVWDPERDTGAWRAIWSYSAKRARRDQKTLAAQEARARAIVAGEKKAKTARF
VKTHGADRALDQASLARAQSLVGLKGYVTNIPVTVMPAAEVIAKYHDLWHVEKSFRMSKSDLDARPMFNRIRDAIEAHLTIVFAALAVSHTIQSRTGLSI
AKVIKLLRPLRSATITINGATQTFPPAIPDTERQILTNLGFNPGY

 

Blast result :
Comments
ISMsm6 is 43% aa similar to ISMhp1.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M.(2006)Direct Submission GenBank.