ISMsm2

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_008596 ND Mycobacterium smegmatis
Mycobacterium smegmatis MC2 155
DNA section
IS Length : 1126 bp

Ends


IR Length : 28/33

IRL : GTGTCCTGAGTCATTAATTGCGGCCTAGTTGTTAAACTAGGTCGTGCCGA
IRR : GTGTCCTGAGTCATTAATTCGGGCGCAGTAGTTGGCGATGCTGGCCAGGA

Insertion site


Left flankDirect repeatRight flankDR Length
TCGAACGCGTCTAGCGGCCCGAGA2
CTGCGCTGAACTAGCTCCGCTCGC2
GCGAGAGCGACTAGCGGTCGCTCG2
TGCCGCGGGTCTAGGCCCGGCGGG2

DNA sequence

GTGTCCTGAGTCATTAATTGCGGCCTAGTTGTTAAACTAGGTCGTGCCGACTCCTCATGCCGCTGAGATTGTGTTGTCCGCTGATGAGCGGGCCGAGTTG
GAGGGCTGGGCGCGGCGACGTACGAGTGCTGCCGGCCTGGCCATGCGGGCTCGAATTGTGTTGGCAGCTGCCGATGGTGGGTCCAATACTGAACTGGCCG
ATCGCCTGGAGTTGTCGATCGGCACGGTGCGGCGCTGGCGCAATCGGTTCGCTGAGCTGCGACTGGACGGCCTCGTTGATGAACCACGTCCGGGTCGGCC
GCGGGTTGTCGGTGACGAGCAGATCGAAGCGTTGATCACCGCGACGTTGGAGACCACCCCGCCTGATGCCACCCATTGGTCAACCCGCTCGATGGCTGCC
CATCTGGGGTTGAGTCAGTCGATGGTCTCGCGCGTCTGGCGAGCGTTCGGACTGGCTCCCCACAAGCAGGACTCGTGGAAACTGTCGAAAGACCCGCTGT
TTGTGGCCAAGGTCCGCGATGTCGTCGGGCTGTACCTGAACCCACCGGAACGGGCCTTGGTGCTGTGCGTGGACGAGAAAACCCAGATCCAGGCACTGAA
CCGGACCCAACCGGTGTTCCCGATGTTGCCCGGCACCCCGGCGCGGGCCAGCCATGACTACGTTCGCCACGGCACCTCCAGCCTCTACGCCGCTCTCGAC
CTGACCACCGGCAAGGTGATCGGCGCCCTGCACTCTCGCCACCGAGCCACGGAGTTTCTGGCTTTTCTCAAGAAGATCGACGTCGAGGTCCCCGACGATC
TTGATGTGCACTTGGTTCTCGACAACGCCTCCACGCACAAGACCCCTGCGGTAAAACGTTGGCTGACAGGCCATCCCAGATTTGTCCTGCACTTCACCCC
GACCAGCTCGTCCTGGCTCAATCTCGTGGAACGCTGGTTCGCCGAGCTGACCACCAAGAAGCTGCGACGCTCCACCCACACCTCAGTTCGGCAACTCAAC
GCCGACATCCGAGCGTGGATCGACACCTGGAACGACAACCCCAAGCCCTACGTCTGGACCAAGACCGCCGATCAAATCCTGGCCAGCATCGCCAACTACT
GCGCCCGAATTAATGACTCAGGACAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1086 bp361 aa441129+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPTPHAAEIVLSADERAELEGWARRRTSAAGLAMRARIVLAAADGGSNTELADRLELSIGTVRRWRNRFAELRLDGLVDEPRPGRPRVVGDEQIEALITA
TLETTPPDATHWSTRSMAAHLGLSQSMVSRVWRAFGLAPHKQDSWKLSKDPLFVAKVRDVVGLYLNPPERALVLCVDEKTQIQALNRTQPVFPMLPGTPA
RASHDYVRHGTSSLYAALDLTTGKVIGALHSRHRATEFLAFLKKIDVEVPDDLDVHLVLDNASTHKTPAVKRWLTGHPRFVLHFTPTSSSWLNLVERWFA
ELTTKKLRRSTHTSVRQLNADIRAWIDTWNDNPKPYVWTKTADQILASIANYCARINDSGH

 

Blast result :
Comments
ISMsm2 is 71% aa similar to ISPsy1.
References
1] Fleischmann,R.D., Dodson,R.J., Haft,D.H., Merkel,J.S., Nelson,W.C. and Fraser,C.M. (2006) Direct Submission GenBank.